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8P9B
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BU of 8p9b by Molmil
Crystal Structure of Mnk2-D228G in complex with Tinodasertib
Descriptor: 4-[6-(4-morpholin-4-ylcarbonylphenyl)imidazo[1,2-a]pyridin-3-yl]benzenecarbonitrile, MAP kinase-interacting serine/threonine-protein kinase 2, ZINC ION
Authors:Turnbull, A.P, Sabin, V, Bell, C, Watson, M.
Deposit date:2023-06-05
Release date:2024-06-12
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal Structure of Mnk2-D228G in complex with Tinodasertib
To Be Published
7N5C
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BU of 7n5c by Molmil
6218 TCR in complex with H2Db PA with an engineered TCR-pMHC disulfide bond
Descriptor: Beta-2-microglobulin, Fusion protein of T cell receptor alpha variable 21-DV12 with T-cell receptor, sp3.4 alpha chain, ...
Authors:Szeto, C, Gras, S.
Deposit date:2021-06-05
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus.
Nat Commun, 13, 2022
7VPY
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BU of 7vpy by Molmil
Crystal structure of the neutralizing nanobody P86 against SARS-CoV-2
Descriptor: 1,2-ETHANEDIOL, Nanobody, SULFATE ION
Authors:Maeda, R, Fujita, J, Konishi, Y, Kazuma, Y, Yamazaki, H, Anzai, I, Yamaguchi, K, Kasai, K, Nagata, K, Yamaoka, Y, Miyakawa, K, Ryo, A, Shirakawa, K, Makino, F, Matsuura, Y, Inoue, T, Imura, A, Namba, K, Takaori-Kondo, A.
Deposit date:2021-10-18
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A panel of nanobodies recognizing conserved hidden clefts of all SARS-CoV-2 spike variants including Omicron.
Commun Biol, 5, 2022
8PA2
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BU of 8pa2 by Molmil
Crystal structure of alcohol dehydrogenase/ketoreductase variant from Thermus thermophilus apo form
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Rozeboom, H.J, Janssen, D.B.
Deposit date:2023-06-07
Release date:2024-06-26
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of alcohol dehydrogenase/ketoreductase variant from Thermus thermophilus apo form
To Be Published
7N5P
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BU of 7n5p by Molmil
6218 TCR in complex with H2-Db PA224-233 with a cysteine mutant
Descriptor: Beta-2-microglobulin, Fusion protein of T cell receptor alpha variable 21-DV12 and T-cell receptor, sp3.4 alpha chain, ...
Authors:Szeto, C, Gras, S.
Deposit date:2021-06-06
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus.
Nat Commun, 13, 2022
6MAX
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BU of 6max by Molmil
Crystal structure of Ribonuclease P protein from Thermotoga maritima in complex with purpurin
Descriptor: Purpurin, Ribonuclease P protein component, SULFATE ION
Authors:Torres-Larios, A, Madrigal-Carrillo, E.A.
Deposit date:2018-08-28
Release date:2019-04-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:A screening platform to monitor RNA processing and protein-RNA interactions in ribonuclease P uncovers a small molecule inhibitor.
Nucleic Acids Res., 47, 2019
8OLS
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BU of 8ols by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
Authors:Silvestri, I, Marcia, M.
Deposit date:2023-03-30
Release date:2024-06-19
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Targeting the conserved active site of splicing machines with specific and selective small molecule modulators.
Nat Commun, 15, 2024
6LUF
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BU of 6luf by Molmil
Trans-acting mutant Y290A of the central AAA+ domain of the flagellar regulatory protein FlrC
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Flagellar regulatory protein C
Authors:Dasgupta, J, Chakraborty, S.
Deposit date:2020-01-27
Release date:2020-03-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Oligomerization of flagellar regulatory protein FlrC is essential for cis-mediated ATP binding while c-di-GMP prefers its monomeric state
To Be Published
7N5Q
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BU of 7n5q by Molmil
Peptide-MHC complex of mouse H2-Db presenting PA224 with E4C mutation
Descriptor: ACETATE ION, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Szeto, C, Gras, S.
Deposit date:2021-06-06
Release date:2022-07-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus.
Nat Commun, 13, 2022
6A4O
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BU of 6a4o by Molmil
HEWL crystals soaked in 2.5M GuHCl for 20 minutes
Descriptor: CHLORIDE ION, GLYCEROL, GUANIDINE, ...
Authors:Tushar, R, Kini, R.M, Koh, C.Y, Hosur, M.V.
Deposit date:2018-06-20
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:X-ray crystallographic analysis of time-dependent binding of guanidine hydrochloride to HEWL: First steps during protein unfolding.
Int. J. Biol. Macromol., 122, 2019
6OYH
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BU of 6oyh by Molmil
Crystal structure of MraY bound to carbacaprazamycin
Descriptor: (5S)-5'-O-(5-amino-5-deoxy-beta-D-ribofuranosyl)-5'-C-[(2S,5S,6S)-5-carboxy-6-heptadecyl-1,4-dimethyl-3-oxo-1,4-diazepan-2-yl]uridine, MraYAA nanobody, Phospho-N-acetylmuramoyl-pentapeptide-transferase
Authors:Mashalidis, E.H, Lee, S.Y.
Deposit date:2019-05-14
Release date:2019-07-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Chemical logic of MraY inhibition by antibacterial nucleoside natural products.
Nat Commun, 10, 2019
8PA4
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BU of 8pa4 by Molmil
Crystal structure of the metallo-beta-lactamase VIM1 with 2526
Descriptor: 3-[4-(carbamimidamidomethyl)-3-fluoranyl-phenyl]-7-propan-2-yl-1~{H}-indole-2-carboxylic acid, Beta-lactamase VIM-1, ZINC ION
Authors:Calvopina, K, Brem, J, Farley, A.J.M, Allen, M.D, Schofield, C.J.
Deposit date:2023-06-07
Release date:2024-06-26
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Crystal structure of the metallo-beta-lactamase VIM1 with 2526
To Be Published
7NMO
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BU of 7nmo by Molmil
Crystal structure of beta-2-microglobulin D76A mutant
Descriptor: Beta-2-microglobulin
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
6MBH
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BU of 6mbh by Molmil
GphF DH1 P1711L, L1744P variant: An isomerase-inactive variant of GphF DH1
Descriptor: GphF Dehydratase 1
Authors:Dodge, G.J, Smith, J.L.
Deposit date:2018-08-29
Release date:2018-09-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Basis for Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase.
ACS Chem. Biol., 13, 2018
6OMX
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BU of 6omx by Molmil
Crystal structure of alr5209, a pentapeptide repeat protein from Nostoc Pcc 7120, determined at 1.7 Angstrom resolution
Descriptor: Alr5209 protein
Authors:Kennedy, M.A, Zhang, R.
Deposit date:2019-04-19
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of Alr1298, a pentapeptide repeat protein from the cyanobacterium Nostoc sp. PCC 7120, determined at 2.1 angstrom resolution.
Proteins, 88, 2020
7NMR
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BU of 7nmr by Molmil
Crystal structure of beta-2-microglobulin D76S mutant
Descriptor: Beta-2-microglobulin, GLYCEROL
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
5BQE
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BU of 5bqe by Molmil
Crystal structure of Norrin in complex with the cysteine-rich domain of Frizzled 4 -Methylated form
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
Authors:Chang, T.-H, Hsieh, F.-L, Harlos, K, Jones, E.Y.
Deposit date:2015-05-28
Release date:2015-07-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and functional properties of Norrin mimic Wnt for signalling with Frizzled4, Lrp5/6, and proteoglycan.
Elife, 4, 2015
6ODZ
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BU of 6odz by Molmil
Benzensulfonamides bearing spyrohydantoin moieties act as potent inhibitors of human carbonic anhydrases II and VII and show neuropathic pain attenuating effects
Descriptor: 2-(2,4-dioxo-1,3-diazaspiro[4.4]nonan-3-yl)-N-(4-sulfamoylphenyl)acetamide, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Peat, T.S.
Deposit date:2019-03-27
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Benzensulfonamides bearing spyrohydantoin moieties act as potent inhibitors of human carbonic anhydrases II and VII and show neuropathic pain attenuating effects.
Eur.J.Med.Chem., 177, 2019
7VMJ
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BU of 7vmj by Molmil
Crystal structure of tubulin with 17a
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CHLORIDE ION, ...
Authors:Jifa, Z, Lun, T.
Deposit date:2021-10-08
Release date:2022-10-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of tubulin with 17j
To Be Published
5B09
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BU of 5b09 by Molmil
Polyketide cyclase OAC from Cannabis sativa bound with Olivetolic acid
Descriptor: 2,4-bis(oxidanyl)-6-pentyl-benzoic acid, Olivetolic acid cyclase
Authors:Yang, X, Matsui, T, Mori, T, Abe, I, Morita, H.
Deposit date:2015-10-28
Release date:2016-01-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for olivetolic acid formation by a polyketide cyclase from Cannabis sativa
Febs J., 283, 2016
7NMT
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BU of 7nmt by Molmil
Crystal structure of beta-2-microglobulin D76G mutant
Descriptor: Beta-2-microglobulin
Authors:Guthertz, N.
Deposit date:2021-02-23
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The effect of mutation on an aggregation-prone protein: An in vivo, in vitro, and in silico analysis.
Proc.Natl.Acad.Sci.USA, 119, 2022
8P59
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BU of 8p59 by Molmil
Structure of the Histidine Kinase CheA ATP-Binding domain in complex with compound QUI-SV-333
Descriptor: 7-(2-phenylethoxy)quinazolin-2-amine, Chemotaxis protein CheA
Authors:Adhav, A, Marina, A.
Deposit date:2023-05-23
Release date:2024-06-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of the Histidine Kinase CheA ATP-Binding domain in complex with compound QUI-SV-333
To Be Published
6A5H
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BU of 6a5h by Molmil
The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of unidentified natural product
Descriptor: 101015D
Authors:Zhang, B, Ge, H.M.
Deposit date:2018-06-23
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.618 Å)
Cite:Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.
Nature, 568, 2019
5AOT
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BU of 5aot by Molmil
Very high resolution structure of a novel carbohydrate binding module from Ruminococcus flavefaciens FD-1 endoglucanase Cel5A
Descriptor: CACODYLATE ION, Carbohydrate binding module, GLYCEROL
Authors:Pires, A.J, Ribeiro, T, Thompson, A, Venditto, I, Fernandes, V.O, Bule, P, Santos, H, Alves, V.D, Pires, V, Ferreira, L.M.A, Fontes, C.M.G.A, Najmudin, S.
Deposit date:2015-09-11
Release date:2016-06-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:Complexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
7VHF
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BU of 7vhf by Molmil
Crystal structure of the STX2a complexed with RRA peptide
Descriptor: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, GLYCEROL, RRA peptide, ...
Authors:Senda, M, Takahashi, M, Nishikawa, K, Senda, T.
Deposit date:2021-09-22
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin.
Sci Rep, 12, 2022

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PDB entries from 2024-08-21

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