PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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6BEN	Solution structure of de novo macrocycle design8.2 Descriptor: (DAR)Q(DPR)(DGN)R(DGL)PQ Authors: Shortridge, M.D, Hosseinzadeh, P, Pardo-Avila, F, Varani, G, Baker, B. Deposit date: 2017-10-25 Release date: 2017-12-27 Last modified: 2023-06-14 Method: SOLUTION NMR Cite: Comprehensive computational design of ordered peptide macrocycles. Science, 358, 2017
5ET3	Crystal Structure of De novo Designed Fullerene organizing peptide Descriptor: (C_{60}-I_{h})[5,6]fullerene, Fullerene Organizing Protein (C60Sol-COP-3) Authors: Kim, K.-H, Kim, Y.H, Acharya, R, Kim, N.H, Paul, J, Grigoryan, G, DeGrado, W.F. Deposit date: 2015-11-17 Release date: 2016-05-04 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.671 Å) Cite: Protein-directed self-assembly of a fullerene crystal. Nat Commun, 7, 2016
5CWD	Crystal structure of de novo designed helical repeat protein DHR7 Descriptor: Designed helical repeat protein Authors: Bhabha, G, Ekiert, D.C. Deposit date: 2015-07-28 Release date: 2015-12-16 Last modified: 2017-10-11 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Exploring the repeat protein universe through computational protein design. Nature, 528, 2015
5CWI	Crystal structure of de novo designed helical repeat protein DHR18 Descriptor: Designed helical repeat protein, PHOSPHATE ION Authors: Bhabha, G, Ekiert, D.C. Deposit date: 2015-07-28 Release date: 2015-12-16 Last modified: 2016-01-06 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Exploring the repeat protein universe through computational protein design. Nature, 528, 2015
5KNG	CRYSTAL STRUCTURE OF ANTI-IL-13 DARPIN 6G9 Descriptor: DARPIN 6G9, GLYCEROL, PHOSPHATE ION Authors: Teplyakov, A, Malia, T, Obmolova, G, Gilliland, G. Deposit date: 2016-06-28 Release date: 2016-12-14 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Conformational flexibility of an anti-IL-13 DARPin. Protein Eng. Des. Sel., 30, 2017
8A3G	X-ray crystal structure of a de novo designed antiparallel coiled-coil homotetramer with 4 heptad repeats, apCC-Tet* Descriptor: ACETATE ION, SODIUM ION, apCC-Tet* Authors: Naudin, E.A, Mylemans, B, Albanese, K.I, Woolfson, D.N. Deposit date: 2022-06-08 Release date: 2022-10-05 Last modified: 2022-11-23 Method: X-RAY DIFFRACTION (0.96 Å) Cite: From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles. Chem Sci, 13, 2022
8A3I	X-ray crystal structure of a de novo designed antiparallel coiled-coil homotetramer with 3 heptad repeats, apCC-Tet*3 Descriptor: apCC-Tet*3 Authors: Naudin, E.A, Mylemans, B, Albanese, K.I, Woolfson, D.N. Deposit date: 2022-06-08 Release date: 2022-10-05 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.42 Å) Cite: From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles. Chem Sci, 13, 2022
8A3K	X-ray crystal structure of a de novo designed single-chain antiparallel 4-helix coiled-coil bundle, sc-apCC-4 Descriptor: sc-apCC-4 Authors: Albanese, K.I, Mylemans, B, Naudin, E.A, Woolfson, D.N. Deposit date: 2022-06-08 Release date: 2022-10-05 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2 Å) Cite: From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles. Chem Sci, 13, 2022
8A3J	X-ray crystal structure of a de novo designed antiparallel coiled-coil heterotetramer with 3 heptad repeats, apCC-Tet*3-A2B2 Descriptor: apCC-Tet*3-A, apCC-Tet*3-B Authors: Naudin, E.A, Mylemans, B, Albanese, K.I, Woolfson, D.N. Deposit date: 2022-06-08 Release date: 2022-10-05 Last modified: 2022-11-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: From peptides to proteins: coiled-coil tetramers to single-chain 4-helix bundles. Chem Sci, 13, 2022
4IH3	2.5 Angstroms X-ray crystal structure of of human 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in complex with dipicolinic acid Descriptor: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, PYRIDINE-2,6-DICARBOXYLIC ACID, ZINC ION Authors: Huo, L, Liu, A. Deposit date: 2012-12-18 Release date: 2014-05-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.493 Å) Cite: Human alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase (ACMSD): A structural and mechanistic unveiling. Proteins, 83, 2015
4IGN	2.32 Angstrom X-ray Crystal structure of R47A mutant of human ACMSD Descriptor: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase, ZINC ION Authors: Liu, F, Liu, A. Deposit date: 2012-12-17 Release date: 2014-05-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.329 Å) Cite: Human alpha-amino-beta-carboxymuconate-epsilon-semialdehyde decarboxylase (ACMSD): A structural and mechanistic unveiling. Proteins, 83, 2015
7KUW	High-throughput design and refinement of stable proteins using sequence-only models Descriptor: Sequence-Based Designed Protein nmt_0994_guided_02 Authors: Bera, A.K, Stewart, L, Kang, A.S, Baker, D. Deposit date: 2020-11-25 Release date: 2021-12-15 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Large-scale design and refinement of stable proteins using sequence-only models. Plos One, 17, 2022
6NL9	Crystal structure of de novo designed metal-controlled dimer of mutant B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, T16L, V29H, Y33H, N37L)-apo Descriptor: Immunoglobulin G-binding protein G, MAGNESIUM ION, SODIUM ION Authors: Maniaci, B, Stec, B, Huxford, T. Deposit date: 2019-01-08 Release date: 2019-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
1LT1	SLIDING HELIX INDUCED CHANGE OF COORDINATION GEOMETRY IN A MODEL DI-MN(II) PROTEIN Descriptor: L13G-DF1, MANGANESE (II) ION Authors: Di Costanzo, L, Geremia, S. Deposit date: 2002-05-20 Release date: 2003-05-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Sliding helix and change of coordination geometry in a model di-MnII protein Angew.Chem.Int.Ed.Engl., 42, 2003
6NLA	Crystal structure of de novo designed metal-controlled dimer of B1 immunoglobulin-binding domain of Streptococcal Protein G (L12H, E15V, T16L, T18I, V29H, Y33H, N37L)-zinc Descriptor: CHLORIDE ION, GLYCEROL, Immunoglobulin G-binding protein G, ... Authors: Maniaci, B, Stec, B, Huxford, T. Deposit date: 2019-01-08 Release date: 2019-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.34 Å) Cite: Design of High-Affinity Metal-Controlled Protein Dimers. Biochemistry, 58, 2019
6NY8	Crystal structure of computationally designed protein XAA_GVDQ with calcium Descriptor: CALCIUM ION, CHLORIDE ION, Design construct XAA_GVDQ Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-11 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NYE	Crystal structure of computationally designed protein XAX Descriptor: Design construct XAX Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-11 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NXM	Crystal structure of computationally designed protein XAA_GVDQ Descriptor: Design construct XAA_GVDQ Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-08 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NX2	Crystal structure of computationally designed protein AAA Descriptor: BROMIDE ION, Design construct AAA Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-07 Release date: 2020-04-22 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NZ3	Crystal structure of computationally designed protein XAA_GGHN Descriptor: CHLORIDE ION, Design construct XAA_GGHN Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-12 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NYI	Crystal structure of computationally designed protein XXA Descriptor: Design construct XXA Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-11 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
6NYK	Crystal structure of computationally designed protein XAX_GGDQ Descriptor: Design construct XAX_GGDQ Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-11 Release date: 2020-04-22 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
1N0D	Stability of cyclic beta-hairpins: Asymmetric contibutions from side chains of hydrogen bonded cross-strand residue pair Descriptor: bhp_VWLH, disulfide cyclized beta-hairpin peptide Authors: Russell, S.J, Blandl, T, Skelton, N.J, Cochran, A.G. Deposit date: 2002-10-11 Release date: 2003-02-04 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Stability of Cyclic Beta-Hairpins: Asymmetric Contributions From Side Chains of Hydrogen Bonded Cross-Strand Residue Pair J.Am.Chem.Soc., 125, 2003
6NZ1	Crystal structure of computationally designed protein XXA_GVDQ Descriptor: Design construct XXA_GVDQ Authors: Wei, K.Y, Bick, M.J. Deposit date: 2019-02-12 Release date: 2020-04-22 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Computational design of closely related proteins that adopt two well-defined but structurally divergent folds. Proc.Natl.Acad.Sci.USA, 117, 2020
3JCI	2.9 Angstrom Resolution Cryo-EM 3-D Reconstruction of Close-packed PCV2 Virus-like Particles Descriptor: Capsid protein Authors: Liu, Z, Guo, F, Wang, F, Li, T.C, Jiang, W. Deposit date: 2015-12-13 Release date: 2016-02-03 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: 2.9 angstrom Resolution Cryo-EM 3D Reconstruction of Close-Packed Virus Particles. Structure, 24, 2016

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