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3SDK
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BU of 3sdk by Molmil
Structure of yeast 20S open-gate proteasome with Compound 34
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, N-[(2S)-3-(3-tert-butyl-1,2,4-oxadiazol-5-yl)-1-({(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}amino)-1-oxopropan-2-yl]-5-methyl-1,2-oxazole-3-carboxamide, ...
Authors:Sintchak, M.D.
Deposit date:2011-06-09
Release date:2012-06-13
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Optimization of a series of dipeptides with a P3 threonine residue as non-covalent inhibitors of the chymotrypsin-like activity of the human 20S proteasome.
Bioorg.Med.Chem.Lett., 20, 2010
3CKS
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BU of 3cks by Molmil
Urate oxidase complexed with 8-azaxanthine under 4.0 MPa oxygen pressure
Descriptor: 8-AZAXANTHINE, OXYGEN MOLECULE, SODIUM ION, ...
Authors:Colloc'h, N, Gabison, L, Chiadmi, M, Abraini, J.H, Prange, T.
Deposit date:2008-03-17
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism.
Biophys.J., 95, 2008
3SHY
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BU of 3shy by Molmil
Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors
Descriptor: 6-ethyl-5-fluoro-2-{5-[(4-methylpiperazin-1-yl)sulfonyl]-2-propoxyphenyl}pyrimidin-4(3H)-one, MAGNESIUM ION, ZINC ION, ...
Authors:Chen, T.T, Chen, T, Xu, Y.C.
Deposit date:2011-06-17
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.647 Å)
Cite:Utilization of Halogen Bond in Lead Optimization: A Case Study of Rational Design of Potent Phosphodiesterase Type 5 (PDE5) Inhibitors.
J.Med.Chem., 54, 2011
3SIX
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BU of 3six by Molmil
Crystal structure of NodZ alpha-1,6-fucosyltransferase soaked with GDP-fucose
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, Nodulation fucosyltransferase NodZ, ...
Authors:Brzezinski, K, Dauter, Z, Jaskolski, M.
Deposit date:2011-06-20
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures of NodZ alpha-1,6-fucosyltransferase in complex with GDP and GDP-fucose
Acta Crystallogr.,Sect.D, 68, 2012
3CP9
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BU of 3cp9 by Molmil
Crystal structure of the VEGFR2 kinase domain in complex with a pyridone inhibitor
Descriptor: 3-(2-aminoquinazolin-6-yl)-1-(3,3-dimethylindolin-6-yl)-4-methylpyridin-2(1H)-one, Vascular endothelial growth factor receptor 2
Authors:Whittington, D.A, Long, A.M, Rose, P, Gu, Y, Zhao, H.
Deposit date:2008-03-31
Release date:2008-06-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Discovery of Aryl Aminoquinazoline Pyridones as Potent, Selective, and Orally Efficacious Inhibitors of Receptor Tyrosine Kinase c-Kit.
J.Med.Chem., 51, 2008
3SJS
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BU of 3sjs by Molmil
Crystal structure of URE3-binding protein from Entamoeba histolytica, (D127A,N129A) mutant, native form
Descriptor: CALCIUM ION, URE3-BP sequence specific DNA binding protein
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-06-21
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of URE3-binding protein from Entamoeba histolytica
to be published
3CQI
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BU of 3cqi by Molmil
Crystal Structure of L-xylulose-5-phosphate 3-epimerase UlaE (form B) complex with sulfate
Descriptor: L-ribulose-5-phosphate 3-epimerase ulaE, SULFATE ION
Authors:Shi, R, Matte, A, Cygler, M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
Deposit date:2008-04-03
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of L-xylulose-5-Phosphate 3-epimerase (UlaE) from the anaerobic L-ascorbate utilization pathway of Escherichia coli: identification of a novel phosphate binding motif within a TIM barrel fold.
J.Bacteriol., 190, 2008
3CQU
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BU of 3cqu by Molmil
Crystal Structure of Akt-1 complexed with substrate peptide and inhibitor
Descriptor: Glycogen synthase kinase-3 beta, N-[2-(5-methyl-4H-1,2,4-triazol-3-yl)phenyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine, RAC-alpha serine/threonine-protein kinase
Authors:Pandit, J.
Deposit date:2008-04-03
Release date:2008-05-27
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Synthesis and structure based optimization of novel Akt inhibitors
Bioorg.Med.Chem.Lett., 18, 2008
3CPR
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BU of 3cpr by Molmil
The crystal structure of Corynebacterium glutamicum dihydrodipicolinate synthase to 2.2 A resolution
Descriptor: Dihydrodipicolinate synthetase
Authors:Rydel, T.J, Sturman, E.J, Rice, E.A.
Deposit date:2008-04-01
Release date:2008-11-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Characterization and crystal structure of lysine insensitive Corynebacterium glutamicum dihydrodipicolinate synthase (cDHDPS) protein.
Arch.Biochem.Biophys., 480, 2008
3CSD
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BU of 3csd by Molmil
Actinorhodin Polyketide Ketoreductase Mutant P94L bound to NADPH and the Inhibitor Emodin
Descriptor: 3-METHYL-1,6,8-TRIHYDROXYANTHRAQUINONE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Putative ketoacyl reductase
Authors:Javidpour, P.
Deposit date:2008-04-09
Release date:2009-04-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Actinorhodin Polyketide Ketoreductase Mutant P94L bound to NADPH and the Inhibitor Emodin
To be Published
3SMC
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BU of 3smc by Molmil
Macrophage Migration Inhibitory Factor (MIF) with Covalently Bound L-sulforaphane
Descriptor: CHLORIDE ION, Macrophage migration inhibitory factor, N-{4-[(R)-methylsulfinyl]butyl}thioformamide, ...
Authors:Crichlow, G.V, Lolis, E.J.
Deposit date:2011-06-27
Release date:2012-10-03
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural interactions dictate the kinetics of macrophage migration inhibitory factor inhibition by different cancer-preventive isothiocyanates.
Biochemistry, 51, 2012
3S6B
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BU of 3s6b by Molmil
Crystal structure of methionine aminopeptidase 1b from Plasmodium Falciparum, PF10_0150
Descriptor: FE (III) ION, GLYCEROL, Methionine aminopeptidase
Authors:Wernimont, A.K, Artz, J.D, Crombet, L, Lew, J, Weadge, J, Tempel, W, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Bountra, C, Hui, R, Hills, T, Structural Genomics Consortium (SGC)
Deposit date:2011-05-25
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of methionine aminopeptidase 1b from Plasmodium Falciparum, PF10_0150
To be Published
3CV0
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BU of 3cv0 by Molmil
Structure of Peroxisomal Targeting Signal 1 (PTS1) binding domain of Trypanosoma brucei Peroxin 5 (TbPEX5)complexed to T. brucei Phosphoglucoisomerase (PGI) PTS1 peptide
Descriptor: 1,2-ETHANEDIOL, Peroxisome targeting signal 1 receptor PEX5, T. brucei PGI PTS1 peptide Ac-FNELSHL
Authors:Sampathkumar, P, Roach, C, Michels, P.A.M, Hol, W.G.J.
Deposit date:2008-04-17
Release date:2008-06-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights into the recognition of peroxisomal targeting signal 1 by Trypanosoma brucei peroxin 5.
J.Mol.Biol., 381, 2008
3DK3
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BU of 3dk3 by Molmil
Crystal structure of mutant ABL kinase domain in complex with small molecule fragment
Descriptor: 2-amino-5-[3-(1-ethyl-1H-pyrazol-5-yl)-1H-pyrrolo[2,3-b]pyridin-5-yl]-N,N-dimethylbenzamide, Proto-oncogene tyrosine-protein kinase ABL1, SULFATE ION
Authors:Lewis, H.A.
Deposit date:2008-06-24
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of mutant ABL kinase domain in complex with small molecule fragment
To be Published
3DKG
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BU of 3dkg by Molmil
Structure of Mutant(Y1248L) MET receptor tyrosine kinase in complex with inhibitor SGX-523
Descriptor: 6-{[6-(1-methyl-1H-pyrazol-4-yl)[1,2,4]triazolo[4,3-b]pyridazin-3-yl]sulfanyl}quinoline, CHLORIDE ION, Hepatocyte growth factor receptor
Authors:Hendle, J.
Deposit date:2008-06-24
Release date:2009-07-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo.
Mol.Cancer Ther., 8, 2009
3SA8
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BU of 3sa8 by Molmil
Crystal structure of wild-type HIV-1 protease in complex with KB83
Descriptor: 3-hydroxy-N-[(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]benzamide, ACETATE ION, PHOSPHATE ION, ...
Authors:Schiffer, C.A, Nalam, M.N.L.
Deposit date:2011-06-02
Release date:2012-06-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Protease Inhibitors that protrude out from substrate envelope are more susceptible to developing drug resistance
To be Published
3SAG
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BU of 3sag by Molmil
Crystal structure of the human RRP6 catalytic domain with D313N mutation in the active site
Descriptor: Exosome component 10, MAGNESIUM ION, YTTRIUM (III) ION
Authors:Januszyk, K, Liu, Q, Lima, C.D.
Deposit date:2011-06-02
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Activities of human RRP6 and structure of the human RRP6 catalytic domain.
Rna, 17, 2011
3DGR
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BU of 3dgr by Molmil
Crystal structure of human NAMPT complexed with ADP analogue
Descriptor: Nicotinamide phosphoribosyltransferase, PHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-15
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009
3DL7
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BU of 3dl7 by Molmil
Aged Form of Mouse Acetylcholinesterase Inhibited by Tabun- Update
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholinesterase, CHLORIDE ION, ...
Authors:Carletti, E, Li, H, Li, B, Ekstrom, F, Nicolet, Y, Loiodice, M, Gillon, E, Froment, M.T, Lockridge, O, Schopfer, L.M, Masson, P, Nachon, F.
Deposit date:2008-06-26
Release date:2008-12-02
Last modified:2021-03-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Aging of Cholinesterases Phosphylated by Tabun Proceeds through O-Dealkylation.
J.Am.Chem.Soc., 130, 2008
3DHF
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BU of 3dhf by Molmil
Crystal structure of phosphorylated mimic form of human NAMPT complexed with nicotinamide mononucleotide and pyrophosphate
Descriptor: BERYLLIUM TRIFLUORIDE ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, ...
Authors:Ho, M, Burgos, E.S, Almo, S.C, Schramm, V.L.
Deposit date:2008-06-17
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.
Proc.Natl.Acad.Sci.USA, 106, 2009
3DHS
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BU of 3dhs by Molmil
Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
Descriptor: OSMIUM ION, RNase P RNA
Authors:Pace, N.R, Kazantsev, A.V, Krivenko, A.A.
Deposit date:2008-06-18
Release date:2009-01-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA
Rna, 15, 2009
3SAH
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BU of 3sah by Molmil
Crystal structure of the human RRP6 catalytic domain with Y436A mutation in the catalytic site
Descriptor: Exosome component 10, MAGNESIUM ION, YTTRIUM (III) ION
Authors:Januszyk, K, Liu, Q, Lima, C.D.
Deposit date:2011-06-02
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Activities of human RRP6 and structure of the human RRP6 catalytic domain.
Rna, 17, 2011
3SC0
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BU of 3sc0 by Molmil
Crystal Structure of MMACHC (1-238), a human B12 processing enzyme, complexed with MethylCobalamin
Descriptor: CO-METHYLCOBALAMIN, Methylmalonic aciduria and homocystinuria type C protein
Authors:Koutmos, M, Gherasim, C, Smith, J.L, Banerjee, R.
Deposit date:2011-06-06
Release date:2011-06-22
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural basis of multifunctionality in a vitamin B12-processing enzyme.
J.Biol.Chem., 286, 2011
3DIB
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BU of 3dib by Molmil
Crystal structure of bovine pancreatic ribonuclease A variant (I106A)
Descriptor: CHLORIDE ION, Ribonuclease pancreatic, SULFATE ION
Authors:Kurpiewska, K, Font, J, Ribo, M, Vilanova, M, Lewinski, K.
Deposit date:2008-06-20
Release date:2008-07-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:X-ray crystallographic studies of RNase A variants engineered at the most destabilizing positions of the main hydrophobic core: further insight into protein stability
Proteins, 77, 2009
3WI3
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BU of 3wi3 by Molmil
Crystal Structure of the Sld3/Treslin domain from yeast Sld3
Descriptor: 1,2-ETHANEDIOL, DNA replication regulator SLD3, SULFATE ION
Authors:Itou, H, Araki, H, Shirakihara, Y.
Deposit date:2013-09-05
Release date:2014-08-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the homology domain of the eukaryotic DNA replication proteins sld3/treslin.
Structure, 22, 2014

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