PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5E6Q	Importin alpha binding to XRCC1 NLS peptide Descriptor: CHLORIDE ION, DNA repair protein XRCC1 NLS peptide, GLYCEROL, ... Authors: Pedersen, L.C, Kirby, T.W, Gassman, N.R, Smith, C.E, Gabel, S.A, Sobhany, M, Wilson, S.H, London, R.E. Deposit date: 2015-10-10 Release date: 2015-10-28 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.305 Å) Cite: Nuclear Localization of the DNA Repair Scaffold XRCC1: Uncovering the Functional Role of a Bipartite NLS. Sci Rep, 5, 2015
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3GP8	Crystal structure of the binary complex of RecD2 with DNA Descriptor: 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3', Exodeoxyribonuclease V, subunit RecD, ... Authors: Saikrishnan, K, Cook, N, Wigley, D.B. Deposit date: 2009-03-23 Release date: 2009-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Mechanistic basis of 5'-3' translocation in SF1B helicases. Cell(Cambridge,Mass.), 137, 2009
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
2JPC	SSRB DNA Binding Protein Descriptor: SsrB Authors: Liao, X, Kenney, L, Sheng, W, Integrated Center for Structure and Function Innovation (ISFI) Deposit date: 2007-05-03 Release date: 2007-07-03 Last modified: 2023-12-20 Method: SOLUTION NMR Cite: SSRB DNA Binding Protein To be Published
1SXP	BGT in complex with a 13mer DNA containing a central A:G mismatch Descriptor: 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3', DNA beta-glucosyltransferase, ... Authors: Lariviere, L, Morera, S. Deposit date: 2004-03-31 Release date: 2004-06-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
4B5H	Substate bound inactive mutant of Neisseria AP endonuclease in presence of metal ions Descriptor: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*CP*AP*TP*CP*GP)-3', MANGANESE (II) ION, ... Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5M	Neisseria AP endonuclease bound to the substrate with a cytosine orphan base Descriptor: 5'-D(*3DRP*CP*AP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP)-3', ... Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-06 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.758 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
7UHE	Taf14 ET domain in complex with C-terminal tail of Taf2 Descriptor: C-terminal tail of Transcription initiation factor TFIID subunit 2, Transcription initiation factor TFIID subunit 14 Authors: Klein, B.J, Kutateladze, T.G. Deposit date: 2022-03-26 Release date: 2022-08-17 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Taf2 mediates DNA binding of Taf14. Nat Commun, 13, 2022
1DRZ	U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX Descriptor: MAGNESIUM ION, PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A), RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME), ... Authors: Ferre-D'Amare, A.R, Zhou, K, Doudna, J.A. Deposit date: 1998-09-01 Release date: 1999-02-16 Last modified: 2021-11-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of a hepatitis delta virus ribozyme. Nature, 395, 1998
6JFU	Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, non-target strand, ... Authors: Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y. Deposit date: 2019-02-12 Release date: 2019-11-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States. Mol.Cell, 76, 2019
4D2H	Crystal structure of the tetramerisation domain of human CtIP Descriptor: RBBP8, SULFATE ION Authors: Davies, O.R, Sun, M, Pellegrini, L. Deposit date: 2014-05-09 Release date: 2015-01-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Ctip Tetramer Assembly is Required for DNA-End Resection and Repair. Nat.Struct.Mol.Biol., 22, 2015
3SM4	Crystal Structure of the K131A Mutant of Lambda Exonuclease in Complex with a 5'-Phosphorylated 14-mer/12-mer Duplex and Magnesium Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*AP*GP*TP*AP*G)-3', 5'-D(P*AP*GP*CP*TP*AP*CP*TP*GP*TP*AP*CP*CP*GP*A)-3', CHLORIDE ION, ... Authors: Bell, C.E, Zhang, J. Deposit date: 2011-06-27 Release date: 2011-07-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity. Proc.Natl.Acad.Sci.USA, 108, 2011
6FM4	The crystal structure of S. aureus Gyrase complex with ID-130 and DNA Descriptor: 5'-O-CARBOXY-2'-DEOXYADENOSINE, DNA (5'-5UA*D(P*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*C)-3'), DNA (5'-5UA*D(P*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ... Authors: Ombrato, R, Garofalo, B, Mangano, G, Mancini, F. Deposit date: 2018-01-30 Release date: 2019-07-10 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Virtual Screening Approach and Investigation of Structure-Activity Relationships To Discover Novel Bacterial Topoisomerase Inhibitors Targeting Gram-Positive and Gram-Negative Pathogens. J.Med.Chem., 62, 2019
1UUT	The Nuclease Domain of Adeno-Associated Virus Rep Complexed with the RBE' Stemloop of the Viral Inverted Terminal Repeat Descriptor: 5'-D(*CP*AP*GP*CP*TP*CP*TP*TP*TP*GP *AP*GP*CP*TP*G)-3', CHLORIDE ION, MAGNESIUM ION, ... Authors: Dyda, F, Hickman, A.B, Ronning, D.R, Perez, Z.N, Kotin, R.M. Deposit date: 2004-01-10 Release date: 2004-02-19 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: The Nuclease Domain of Adeno-Associated Virus Rep Coordinates Replication Initiation Using Two Distinct DNA Recognition Interfaces Mol.Cell, 13, 2004
2WIW	Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate Descriptor: 5'-D(*DC*DG*DG*DA*DT*DA*DT*DC*DC*DGP)-3', GLYCEROL, HEXANE-1,6-DIOL, ... Authors: Carolis, C, Koehler, C, Sauter, C, Basquin, J, Suck, D, Toeroe, I. Deposit date: 2009-05-18 Release date: 2009-05-26 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate To be Published
4QIO	Lambda-[Ru(TAP)2(dppz)]2+ bound to d(TCGGCGCCIA) at high resolution Descriptor: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*IP*A)-3', BARIUM ION, CHLORIDE ION, ... Authors: Gurung, S.P, Hall, J.P, Cardin, C.J. Deposit date: 2014-06-01 Release date: 2015-06-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (0.95 Å) Cite: Inosine Can Increase DNA's Susceptibility to Photo-oxidation by a Ru II Complex due to Structural Change in the Minor Groove. Chemistry, 23, 2017
4B5I	Product complex of Neisseria AP endonuclease in presence of metal ions Descriptor: 5'-D(*3DRP*CP*AP*TP*CP*GP)-3', 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP)-3', ... Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.555 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5J	Neisseria AP endonuclease bound to the substrate with an orphan Adenine base Descriptor: 5'-D(*CP*GP*AP*TP*GP*AP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3', PUTATIVE EXODEOXYRIBONUCLEASE Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5G	Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 2) Descriptor: 5'-D(*CP*GP*AP*TP*GP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*(3DR)P*CP*AP*TP*CP*GP)-3', EXODEOXYRIBONUCLEASE Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
4B5F	Substrate bound Neisseria AP endonuclease in absence of metal ions (crystal form 1) Descriptor: 5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*CP)-3', 5'-D(*GP*CP*TP*AP*CP*3DRP*GP*AP*TP*CP*GP)-3', PUTATIVE EXODEOXYRIBONUCLEASE Authors: Lu, D, Silhan, J, MacDonald, J.T, Carpenter, E.P, Jensen, K, Tang, C.M, Baldwin, G.S, Freemont, P.S. Deposit date: 2012-08-03 Release date: 2012-10-17 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Structural basis for the recognition and cleavage of abasic DNA in Neisseria meningitidis. Proc. Natl. Acad. Sci. U.S.A., 109, 2012
2KHS	Solution structure of SNase121:SNase(111-143) complex Descriptor: Nuclease, Thermonuclease Authors: Geng, Y, Feng, Y, Xie, T, Shan, L, Wang, J. Deposit date: 2009-04-10 Release date: 2009-10-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: The native-like interactions between SNase121 and SNase(111-143) fragments induce the recovery of their native-like structures and the ability to degrade DNA. Biochemistry, 48, 2009
3TND	Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex Descriptor: Antitoxin VapB, SODIUM ION, SULFATE ION, ... Authors: Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. Deposit date: 2011-09-01 Release date: 2011-11-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
7VJQ	Pectobacterium phage ZF40 apo-aca2 complexed with 26bp DNA substrate Descriptor: CHLORIDE ION, DNA (27-MER), GLYCEROL, ... Authors: Liu, Y.H, Zhang, L.S, Wu, B.X, Huang, H.D. Deposit date: 2021-09-28 Release date: 2021-10-20 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Structural basis for anti-CRISPR repression mediated by bacterial operon proteins Aca1 and Aca2. J.Biol.Chem., 297, 2021
1TL6	Solution structure of T4 bacteriphage AsiA monomer Descriptor: 10 kDa anti-sigma factor Authors: Lambert, L.J, Wei, Y, Schirf, V, Demeler, B, Werner, M.H. Deposit date: 2004-06-09 Release date: 2005-06-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: T4 AsiA blocks DNA recognition by remodeling sigma70 region 4 Embo J., 23, 2004

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