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2KVF
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BU of 2kvf by Molmil
Structure of the three-Cys2His2 domain of mouse testis zinc finger protein
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 32
Authors:Chou, C.-C, Lou, Y.-C, Chen, C.
Deposit date:2010-03-15
Release date:2010-04-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein.
Proteins, 78, 2010
2KVG
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BU of 2kvg by Molmil
Structure of the three-Cys2His2 domain of mouse testis zinc finger protein
Descriptor: ZINC ION, Zinc finger and BTB domain-containing protein 32
Authors:Chou, C.-C, Lou, Y.-C, Chen, C.
Deposit date:2010-03-15
Release date:2010-04-14
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure and DNA binding characteristics of the three-Cys(2)His(2) domain of mouse testis zinc finger protein.
Proteins, 78, 2010
7RCF
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BU of 7rcf by Molmil
Fourth stage reengineered variant of I-OnuI with stability enhancing substitutions
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
Deposit date:2021-07-07
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.233 Å)
Cite:Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
7RCG
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BU of 7rcg by Molmil
I-OnuI_e-hPD1-f final stage reengineered variant of I-OnuI
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (26-MER), ...
Authors:Smiley, A.T, Werther, R.A, Stoddard, B.L.
Deposit date:2021-07-07
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.368 Å)
Cite:Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
7RCD
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BU of 7rcd by Molmil
Second stage reengineered variant of I-OnuI targeting human PD1 gene with activity enhancing substitutions
Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-c
Authors:Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
Deposit date:2021-07-07
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.448 Å)
Cite:Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
7RCE
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BU of 7rce by Molmil
Third stage reengineered variant of I-OnuI with specificity enhancing substitutions
Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-d, ...
Authors:Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
Deposit date:2021-07-07
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
7RCC
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BU of 7rcc by Molmil
First stage engineered variant of I-OnuI after initial reassembly
Descriptor: CALCIUM ION, DNA (26-MER), I-OnuI_e-hPD1-b
Authors:Ubilla-Rodriguez, N.C, Werther, R.A, Stoddard, B.L.
Deposit date:2021-07-07
Release date:2022-06-29
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Characterization of the stepwise engineering and optimization of a retargeted DNA binding protein and gene-editing meganuclease
To Be Published
6RJG
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BU of 6rjg by Molmil
Cryo-EM structure of St1Cas9-sgRNA-AcrIIA6-tDNA59-ntPAM complex.
Descriptor: AcrIIA6, Cas 9, ntPAM, ...
Authors:Goulet, A, Chaves-Sanjuan, A, Cambillau, C.
Deposit date:2019-04-26
Release date:2019-10-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6.
Mol.Cell, 76, 2019
8GJ9
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BU of 8gj9 by Molmil
RAD51C N-terminal domain
Descriptor: RAD51C, ZINC ION
Authors:Arvai, A.S, Tainer, J.A, Williams, G.
Deposit date:2023-03-15
Release date:2023-08-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles.
Nat Commun, 14, 2023
1EEK
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BU of 1eek by Molmil
SOLUTION STRUCTURE OF A NONPOLAR, NON HYDROGEN BONDED BASE PAIR SURROGATE IN DNA.
Descriptor: 5'-D(*CP*GP*CP*AP*TP*(DFT)P*GP*TP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*AP*CP*(MBZ)P*AP*TP*GP*CP*G)-3'
Authors:Kool, E.T, Krugh, T.R, Guckian, K.M.
Deposit date:2000-02-01
Release date:2000-02-16
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution Structure of a Nonpolar, Non-Hydrogen-Bonded Base Pair Surrogate in DNA
J.Am.Chem.Soc., 122, 2000
7VIM
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BU of 7vim by Molmil
The C-terminal DNA binding domain of EsrB from Edwardsiella piscicida
Descriptor: Protein EsrB
Authors:Liu, B, Reverter, D, Shao, S.
Deposit date:2021-09-27
Release date:2022-09-28
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The C-terminal DNA binding domain of EsrB from Edwardsiella piscicida
To Be Published
2DPU
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BU of 2dpu by Molmil
Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA
Descriptor: 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*T)-3', 5'-D(P*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', Replication termination protein
Authors:Vivian, J.P, Wilce, J, Wilce, M.C.J.
Deposit date:2006-05-15
Release date:2007-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of the replication termination protein in complex with a pseudosymmetric 21mer B-site DNA
to be published
3FA1
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BU of 3fa1 by Molmil
Crystal Structure of Tellurium Derivatized DNA
Descriptor: 5'-D(*DGP*(UMS)P*DGP*(TTI)P*DAP*DCP*DAP*DC)-3'
Authors:Sheng, J, Tatsuya, M, Hassan, A.E, Huang, Z.
Deposit date:2008-11-14
Release date:2009-01-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of Tellurium Derivatized DNA
To be Published
5NRR
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BU of 5nrr by Molmil
Human DNMT3B PWWP domain in complex with 5-[(2-Hydroxyethyl)(propyl)amino]-1-pentanol
Descriptor: 5-[2-hydroxyethyl(propyl)amino]pentan-1-ol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION
Authors:Rondelet, G, Wouters, J.
Deposit date:2017-04-25
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors
To be published
8A3V
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BU of 8a3v by Molmil
Crystal structure of the Vibrio cholerae replicative helicase (VcDnaB) in complex with its loader protein (VcDciA)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DUF721 domain-containing protein, MAGNESIUM ION, ...
Authors:Walbott, H, Quevillon-Cheruel, S, Cargemel, C.
Deposit date:2022-06-09
Release date:2023-02-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The LH-DH module of bacterial replicative helicases is the common binding site for DciA and other helicase loaders.
Acta Crystallogr D Struct Biol, 79, 2023
5NRV
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BU of 5nrv by Molmil
Human DNMT3B PWWP domain in complex with 6-dipropylamino-1-hexanol
Descriptor: 6-dipropylamino-1-hexanol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION
Authors:Rondelet, G, Wouters, J.
Deposit date:2017-04-25
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.075 Å)
Cite:Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors
To be published
7T5V
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BU of 7t5v by Molmil
Structure of E. coli CapH C-terminal domain I99M mutant
Descriptor: Helix-turn-helix domain-containing protein
Authors:Lau, R.K, Corbett, K.D.
Deposit date:2021-12-13
Release date:2022-09-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:A conserved signaling pathway activates bacterial CBASS immune signaling in response to DNA damage.
Embo J., 41, 2022
7T5W
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BU of 7t5w by Molmil
Structure of E. coli CapH C-terminal domain
Descriptor: Helix-turn-helix domain-containing protein
Authors:Lau, R.K, Corbett, K.D.
Deposit date:2021-12-13
Release date:2022-09-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A conserved signaling pathway activates bacterial CBASS immune signaling in response to DNA damage.
Embo J., 41, 2022
5NRS
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BU of 5nrs by Molmil
Human DNMT3B PWWP domain in complex with N,N-bis(2-hydroxypropyl)ethanolamine
Descriptor: (2~{S})-1-[2-hydroxyethyl-[(2~{S})-2-oxidanylpropyl]amino]propan-2-ol, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION
Authors:Rondelet, G, Wouters, J.
Deposit date:2017-04-25
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors
To be published
4FDG
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BU of 4fdg by Molmil
Crystal Structure of an Archaeal MCM Filament
Descriptor: Minichromosome maintenance protein MCM, ZINC ION
Authors:Slaymaker, I.M, Fu, Y, Brewster, A.B, Chen, X.S.
Deposit date:2012-05-28
Release date:2013-03-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.1 Å)
Cite:Mini-chromosome maintenance complexes form a filament to remodel DNA structure and topology.
Nucleic Acids Res., 41, 2013
8QG0
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BU of 8qg0 by Molmil
Archaeoglobus fulgidus AfAgo complex with AfAgo-N protein (fAfAgo) bound with 17 nt RNA guide and 17 nt DNA target
Descriptor: AfAgo-N protein, DNA target 17 nt, Piwi protein, ...
Authors:Manakova, E.N, Zaremba, M, Pocevicuite, R, Golovinas, E, Zagorskaite, E, Silanskas, A.
Deposit date:2023-09-05
Release date:2024-01-24
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.43 Å)
Cite:The missing part: the Archaeoglobus fulgidus Argonaute forms a functional heterodimer with an N-L1-L2 domain protein.
Nucleic Acids Res., 52, 2024
5NV0
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BU of 5nv0 by Molmil
Human DNMT3B PWWP domain in complex with 4-(dipropylamino)butyronitrile
Descriptor: 4-(dipropylamino)butanenitrile, DNA (cytosine-5)-methyltransferase 3B, SULFATE ION
Authors:Rondelet, G, Wouters, J.
Deposit date:2017-05-03
Release date:2018-05-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Targeting PWWP domain of DNA methyltransferase 3B for epigenetic cancer therapy: Identification and structural characterization of new potential protein-protein interaction inhibitors
To Be Published
5DQU
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BU of 5dqu by Molmil
Crystal Structure of Cas-DNA-10 complex
Descriptor: CRISPR-associated endonuclease Cas1, CRISPR-associated endoribonuclease Cas2, DNA (5'-D(*GP*AP*GP*TP*CP*GP*AP*TP*GP*CP*TP*TP*TP*TP*T)-3'), ...
Authors:Wang, J, Li, J, Zhao, H, Sheng, G, Wang, M, Yin, M, Wang, Y.
Deposit date:2015-09-15
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems.
Cell, 163, 2015
8WRX
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BU of 8wrx by Molmil
Anti-CRISPR type II-A 28
Descriptor: Anti-CRISPR protein AcrIIA28, ZINC ION
Authors:Kim, G.E, Park, H.H.
Deposit date:2023-10-16
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:AcrIIA28 is a metalloprotein that specifically inhibits targeted-DNA loading to SpyCas9 by binding to the REC3 domain.
Nucleic Acids Res., 52, 2024
6RJD
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BU of 6rjd by Molmil
Cryo-EM structure of St1Cas9-sgRNA-tDNA59-ntPAM complex.
Descriptor: Streptococcus Thermophilus 1 Cas9, ntPAM, sgRNA (78-MER), ...
Authors:Goulet, A, Chaves-Sanjuan, A, Cambillau, C.
Deposit date:2019-04-26
Release date:2019-10-02
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cas9 Allosteric Inhibition by the Anti-CRISPR Protein AcrIIA6.
Mol.Cell, 76, 2019

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