PDB: 1406 resultsInfo pagesStatus searchChemie searchBIRD

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2HP4	Computational design and crystal structure of an enhanced affinity mutant human CD8-alpha-alpha co-receptor Descriptor: GLYCEROL, SULFATE ION, T-cell surface glycoprotein CD8 alpha chain Authors: Rizkallah, P.J, Cole, D.K, Jakobsen, B.K, Boulter, J.M, Glick, M, Gao, G.F. Deposit date: 2006-07-17 Release date: 2007-02-06 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Computational design and crystal structure of an enhanced affinity mutant human CD8 alphaalpha coreceptor Proteins, 67, 2007
2DTM	Thermodynamic and structural analyses of hydrolytic mechanism by catalytic antibodies Descriptor: IMMUNOGLOBULIN 6D9 Authors: Oda, M, Ito, N, Tsumuraya, T, Suzuki, K, Fujii, I. Deposit date: 2006-07-13 Release date: 2007-05-29 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2HLF	Structure of the Escherichis coli ClC chloride channel Y445E mutant and Fab complex Descriptor: BROMIDE ION, Fab Fragment, Heavy chain, ... Authors: Accardi, A, Lobet, S, Williams, C, Miller, C, Dutzler, R. Deposit date: 2006-07-07 Release date: 2006-09-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger J.Mol.Biol., 362, 2006
2HG5	Cs+ complex of a K channel with an amide to ester substitution in the selectivity filter Descriptor: (2S)-2-(BUTYRYLOXY)-3-HYDROXYPROPYL NONANOATE, CESIUM ION, FAB HEAVY CHAIN, ... Authors: Valiyaveetil, F.I, MacKinnon, R, Muir, T.W. Deposit date: 2006-06-26 Release date: 2006-09-12 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural and Functional Consequences of an Amide-to-Ester Substitution in the Selectivity Filter of a Potassium Channel. J.Am.Chem.Soc., 128, 2006
2HFG	Crystal structure of hBR3 bound to CB3s-Fab Descriptor: CB3s Fab heavy chain, CB3s Fab light chain (kappa), Tumor necrosis factor receptor superfamily member 13C Authors: Hymowitz, S.G. Deposit date: 2006-06-23 Release date: 2006-11-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Synthetic anti-BR3 antibodies that mimic BAFF binding and target both human and murine B cells. Blood, 108, 2006
2DRU	Crystal structure and binding properties of the CD2 and CD244 (2B4) binding protein, CD48 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, chimera of CD48 antigen and T-cell surface antigen CD2 Authors: Evans, E.J, Ikemizu, S, Davis, S.J. Deposit date: 2006-06-15 Release date: 2006-07-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure and Binding Properties of the CD2 and CD244 (2B4)-binding Protein, CD48 J.Biol.Chem., 281, 2006
2H8P	Structure of a K channel with an amide to ester substitution in the selectivity filter Descriptor: (2S)-2-(BUTYRYLOXY)-3-HYDROXYPROPYL NONANOATE, FAB heavy chain, FAB light chain, ... Authors: Valiyaveetil, F.I, MacKinnon, R, Muir, T.W. Deposit date: 2006-06-07 Release date: 2006-09-12 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural and Functional Consequences of an Amide-to-Ester Substitution in the Selectivity Filter of a Potassium Channel. J.Am.Chem.Soc., 128, 2006
2DQU	Crystal form II: high resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2DQT	High resolution crystal structure of the complex of the hydrolytic antibody Fab 6D9 and a transition-state analog Descriptor: IMMUNOGLOBULIN 6D9, [1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Authors: Kristensen, O, Vassylyev, D.G, Tanaka, F, Ito, N, Morikawa, K, Fujii, I. Deposit date: 2006-05-30 Release date: 2006-06-20 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Thermodynamic and structural basis for transition-state stabilization in antibody-catalyzed hydrolysis J.Mol.Biol., 369, 2007
2DQF	Crystal structure of hyhel-10 FV mutant (y33ay53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQD	Crystal structure of hyhel-10 FV mutant (Hy50f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQC	Crystal structure of hyhel-10 FV mutant(Hy33f) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2DQE	Crystal structure of hyhel-10 FV mutant (Hy53a) complexed with hen egg lysozyme Descriptor: Ig VH,anti-lysozyme, Lysozyme C, lysozyme binding Ig kappa chain V23-J2 region Authors: Shiroishi, M, Kondo, H, Tsumoto, K, Kumagai, I. Deposit date: 2006-05-25 Release date: 2007-01-23 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL J.Biol.Chem., 282, 2007
2H32	Crystal structure of the pre-B cell receptor Descriptor: Immunoglobulin heavy chain, Immunoglobulin iota chain, Immunoglobulin omega chain, ... Authors: Bankovich, A.J. Deposit date: 2006-05-22 Release date: 2007-04-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural Insight into Pre-B Cell Receptor Function Science, 316, 2007
2H3N	Crystal structure of a surrogate light chain (LAMBDA5 and VpreB) homodimer Descriptor: Ig lambda-5, VpreB protein Authors: Bankovich, A.J, Garcia, K.C. Deposit date: 2006-05-22 Release date: 2007-05-08 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural insight into pre-B cell receptor function Science, 316, 2007
2H2S	Crystal Structure of E148A mutant of CLC-ec1 in SeCN- Descriptor: CLC Cl transporter, FAB fragment, heavy chain, ... Authors: Nguitragool, W, Miller, C. Deposit date: 2006-05-19 Release date: 2006-05-30 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Uncoupling of a CLC Cl(-)/H(+) Exchange Transporter by Polyatomic Anions J.Mol.Biol., 362, 2006
2H2P	Crystal structure of CLC-ec1 in complex with Fab fragment in SeCN- Descriptor: CLC Cl transporter, FAB fragment, heavy chain, ... Authors: Nguitragool, W, Miller, C. Deposit date: 2006-05-19 Release date: 2006-05-30 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Uncoupling of a CLC Cl(-)/H(+) Exchange Transporter by Polyatomic Anions J.Mol.Biol., 362, 2006
2GSI	Crystal Structure of a Murine Fab in Complex with an 11 Residue Peptide Derived from Staphylococcal Nuclease Descriptor: Immunoglobulin (gamma) heavy chain (VH + CH1 fragment), Immunoglobulin (kappa) light chain, SODIUM ION, ... Authors: Armstrong, A.A, Amzel, L.M. Deposit date: 2006-04-26 Release date: 2006-05-16 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Crystal Structure of a Murine Fab in Complex with an 11 Residue Peptide Derived from Staphylococcal Nuclease To be Published
2DKS	Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 8 Authors: Nagashima, K, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-14 Release date: 2007-05-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the first IG-like domain of human carcinoembryonic antigen related cell adhesion molecule 8 To be Published
2CJU	Crystal structure of the TEPC15-Vk45.1 anti-2-phenyl-5-oxazolone NQ16- 113.8 scFv in complex with phOxGABA Descriptor: 4-{[(Z)-(5-OXO-2-PHENYL-1,3-OXAZOL-4(5H)-YLIDENE)METHYL]AMINO}BUTANOIC ACID, NQ16-113.8 ANTI-PHOX ANTIBODY Authors: Scotti, C, Gherardi, E. Deposit date: 2006-04-09 Release date: 2006-06-20 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis of Affinity Maturation of the Tepc15/V(Kappa)45.1 Anti-2-Phenyl-5-Oxazolone Antibodies. J.Mol.Biol., 359, 2006
2GKI	Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity Descriptor: nuclease Authors: Kim, Y.R, Kim, J.S, Lee, S.H, Lee, W.R, Sohn, J.N, Chung, Y.C, Shim, H.K, Lee, S.C, Kwon, M.H, Kim, Y.S. Deposit date: 2006-04-02 Release date: 2006-04-18 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.88 Å) Cite: Heavy and light chain variable single domains of an anti-DNA binding antibody hydrolyze both double- and single-stranded DNAs without sequence specificity. J.Biol.Chem., 281, 2006
2GK2	Crystal structure of the N terminal domain of human CEACAM1 Descriptor: Carcinoembryonic antigen-related cell adhesion molecule 1, GLYCEROL, NICKEL (II) ION Authors: Fedarovich, A, Tomberg, J, Nicholas, R.A, Davies, C. Deposit date: 2006-03-31 Release date: 2006-09-05 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structure of the N-terminal domain of human CEACAM1: binding target of the opacity proteins during invasion of Neisseria meningitidis and N. gonorrhoeae. Acta Crystallogr.,Sect.D, 62, 2006
2GJZ	Structure of Catalytic Elimination Antibody 13G5 from a crystal in space group P2(1) Descriptor: Catalytic elimination antibody 13G5 heavy chain, Catalytic elimination antibody 13G5 light chain, ZINC ION Authors: Debler, E.W, Wilson, I.A. Deposit date: 2006-03-31 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc., 129, 2007
2GK0	Structure of Catalytic Elimination Antibody 13G5 from a twinned crystal in space group C2 Descriptor: Catalytic elimination antibody 13G5 heavy chain, Catalytic elimination antibody 13G5 light chain Authors: Debler, E.W, Wilson, I.A. Deposit date: 2006-03-31 Release date: 2007-02-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Bifunctional Catalysis of Proton Transfer at an Antibody Active Site. J.Am.Chem.Soc., 129, 2007
2GHW	Crystal structure of SARS spike protein receptor binding domain in complex with a neutralizing antibody, 80R Descriptor: CHLORIDE ION, Spike glycoprotein, anti-sars scFv antibody, ... Authors: Hwang, W.C, Lin, Y, Santelli, E, Sui, J, Jaroszewski, L, Stec, B, Farzan, M, Marasco, W.A, Liddington, R.C. Deposit date: 2006-03-27 Release date: 2006-09-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R. J.Biol.Chem., 281, 2006

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