Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4W6Y
DownloadVisualize
BU of 4w6y by Molmil
Co-complex structure of the lectin domain of F18 fimbrial adhesin FedF with inhibitory nanobody NbFedF9
Descriptor: F18 fimbrial adhesin AC, Nanobody NbFedF9, SULFATE ION
Authors:Moonens, K, De Kerpel, M, Coddens, A, Cox, E, Pardon, E, Remaut, H, De Greve, H.
Deposit date:2014-08-21
Release date:2014-12-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Nanobody Mediated Inhibition of Attachment of F18 Fimbriae Expressing Escherichia coli.
Plos One, 9, 2014
8HAO
DownloadVisualize
BU of 8hao by Molmil
Human parathyroid hormone receptor-1 dimer
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha, ...
Authors:Zhao, L, Xu, H.E, Yuan, Q.
Deposit date:2022-10-26
Release date:2022-12-21
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.76 Å)
Cite:Molecular recognition of two endogenous hormones by the human parathyroid hormone receptor-1.
Acta Pharmacol.Sin., 44, 2023
5SQI
DownloadVisualize
BU of 5sqi by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5016127255 - (R,R) and (S,S) isomers
Descriptor: (1R,2R)-4-hydroxy-1-[4-(methylcarbamamido)benzamido]-2,3-dihydro-1H-indene-2-carboxylic acid, (1S,2S)-4-hydroxy-1-[4-(methylcarbamamido)benzamido]-2,3-dihydro-1H-indene-2-carboxylic acid, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
8GY7
DownloadVisualize
BU of 8gy7 by Molmil
Cryo-EM structure of ACTH-bound melanocortin-2 receptor in complex with MRAP1 and Gs protein
Descriptor: CALCIUM ION, Corticotropin, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Luo, P, Feng, W.B, Ma, S.S, Dai, A.T, Yuan, Q.N, Wu, K, Yang, D.H, Wang, M.W, Xu, H.E, Jiang, Y.
Deposit date:2022-09-21
Release date:2023-01-11
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of signaling regulation of the human melanocortin-2 receptor by MRAP1.
Cell Res., 33, 2023
8H1A
DownloadVisualize
BU of 8h1a by Molmil
Crystal structure of MnmM from S. aureus in apo state (1.44 A)
Descriptor: rRNA methylase YtqB
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-01
Release date:2023-01-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
4W75
DownloadVisualize
BU of 4w75 by Molmil
Crystal Structure of Full-Length Split GFP Mutant D21H/K26C Disulfide and Metal-Mediated Dimer, P 21 21 21 Space Group, Form 1
Descriptor: COPPER (II) ION, fluorescent protein D21H/K26C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-21
Release date:2015-03-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.473 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
2RG9
DownloadVisualize
BU of 2rg9 by Molmil
Crystal structure of viscum album mistletoe lectin I in native state at 1.95 A resolution, comparison of structure active site conformation in ricin and in viscumin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AZIDE ION, Beta-galactoside-specific lectin 1 chain A isoform 1, ...
Authors:Karpechenko, N.U, Timofeev, V.I, Gabdoulkhakov, A.G, Mikhailov, A.M.
Deposit date:2007-10-03
Release date:2008-10-07
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of viscum album mistletoe lectin I in native state at 1.95 A resolution, comparison of structure active site conformation in ricin and in viscumin
To be Published
5SQE
DownloadVisualize
BU of 5sqe by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5010894392- (S,S) isomer
Descriptor: (1S,2S)-4-hydroxy-1-{4-[(1H-imidazol-1-yl)amino]benzamido}-2,3-dihydro-1H-indene-2-carboxylic acid, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
8HJ4
DownloadVisualize
BU of 8hj4 by Molmil
CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex
Descriptor: CRISPR-associated endonuclease Cas9, Phage protein, sgRNA
Authors:Wang, Y, Sun, W.
Deposit date:2022-11-22
Release date:2023-01-25
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Anti-CRISPR AcrIIC5 is a dsDNA mimic that inhibits type II-C Cas9 effectors by blocking PAM recognition.
Nucleic Acids Res., 51, 2023
5SQF
DownloadVisualize
BU of 5sqf by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with REAL250000548538 - (R) isomer
Descriptor: (3R)-1-(1H-pyrrolo[2,3-b]pyridine-4-carbonyl)piperidine-3-carboxylic acid, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
4W7A
DownloadVisualize
BU of 4w7a by Molmil
Crystal Structure of Full-Length Split GFP Mutant D21H/K26C Disulfide and Metal-Mediated Dimer, P 21 21 21 Space Group, Form 4
Descriptor: COPPER (II) ION, fluorescent protein D21H/K26C
Authors:Leibly, D.J, Waldo, G.S, Yeates, T.O.
Deposit date:2014-08-21
Release date:2015-02-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.603 Å)
Cite:A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.
Structure, 23, 2015
5SS4
DownloadVisualize
BU of 5ss4 by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCns000000RJoU
Descriptor: (3-{[(thieno[3,2-d]pyrimidine-4-carbonyl)amino]methyl}phenyl)acetic acid, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
2RLI
DownloadVisualize
BU of 2rli by Molmil
Solution structure of Cu(I) human Sco2
Descriptor: COPPER (I) ION, SCO2 protein homolog, mitochondrial
Authors:Banci, L, Bertini, I, Ciofi-baffoni, S, Gerothanassis, I.P, Leontari, I, Martinelli, M, Wang, S, Structural Proteomics in Europe (SPINE), Structural Proteomics in Europe 2 (SPINE-2)
Deposit date:2007-07-11
Release date:2007-08-28
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:A Structural Characterization of Human SCO2
Structure, 15, 2007
8HAW
DownloadVisualize
BU of 8haw by Molmil
An auto-activation mechanism of plant non-specific phospholipase C
Descriptor: CALCIUM ION, GLYCEROL, Non-specific phospholipase C4, ...
Authors:Zhao, F, Fan, R.Y, Guan, Z.Y, Guo, L, Yin, P.
Deposit date:2022-10-26
Release date:2023-01-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Insights into the mechanism of phospholipid hydrolysis by plant non-specific phospholipase C.
Nat Commun, 14, 2023
4W7I
DownloadVisualize
BU of 4w7i by Molmil
Crystal structure of DEH reductase A1-R' mutant
Descriptor: 4-deoxy-L-erythro-5-hexoseulose uronate reductase A1-R'
Authors:Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W.
Deposit date:2014-08-22
Release date:2014-09-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
5SSJ
DownloadVisualize
BU of 5ssj by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINCno00000broQT
Descriptor: 2-{2-[(6-fluoro-1H-benzimidazole-5-carbonyl)amino]ethyl}-1,3-thiazole-4-carboxylic acid, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
8HMU
DownloadVisualize
BU of 8hmu by Molmil
Crystal Structure of PKM2 mutant R516C
Descriptor: 1,2-ETHANEDIOL, 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, ...
Authors:Upadhyay, S, Kumar, A, Patel, A.K.
Deposit date:2022-12-05
Release date:2023-01-11
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and mechanistic insights into cancer patient-derived mutations in Pyruvate Kinase muscle isoform 2
To Be Published
2RNK
DownloadVisualize
BU of 2rnk by Molmil
NMR structure of the domain 513-651 of the SARS-CoV nonstructural protein nsp3
Descriptor: Replicase polyprotein 1ab
Authors:Chatterjee, A, Johnson, M.A, Serrano, P, Pedrini, B, Joseph, J, Saikatendu, K, Neuman, B.W, Wilson, I.A, Stevens, R.C, Buchmeier, M.J, Kuhn, P, Wuthrich, K, Joint Center for Structural Genomics (JCSG)
Deposit date:2008-01-11
Release date:2008-02-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.
J.Virol., 83, 2009
4W7S
DownloadVisualize
BU of 4w7s by Molmil
Crystal structure of the yeast DEAD-box splicing factor Prp28 at 2.54 Angstroms resolution
Descriptor: GLYCEROL, HEXAETHYLENE GLYCOL, MAGNESIUM ION, ...
Authors:Jacewicz, A, Smith, P, Schwer, B, Shuman, S.
Deposit date:2014-08-22
Release date:2014-10-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.542 Å)
Cite:Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28.
Nucleic Acids Res., 42, 2014
8H27
DownloadVisualize
BU of 8h27 by Molmil
Crystal structure of MnmM from S. aureus complexed with SAM (2.04 A)
Descriptor: 16S rRNA (Cytosine(1402)-N(4))-methyltransferase, S-ADENOSYLMETHIONINE
Authors:Kim, J, Cho, G, Lee, J.
Deposit date:2022-10-05
Release date:2023-01-25
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.
Nucleic Acids Res., 51, 2023
5SQK
DownloadVisualize
BU of 5sqk by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z2479782408 - (R,S) isomer
Descriptor: (1R,3S)-3-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentan-1-ol, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
2RHI
DownloadVisualize
BU of 2rhi by Molmil
Crystal structure of the 3-MBT domain from human L3MBTL1 in complex with H1.5K27me2 at 1.66 angstrom
Descriptor: DI(HYDROXYETHYL)ETHER, Histone H1.5, Lethal(3)malignant brain tumor-like protein, ...
Authors:Li, H, Patel, D.J.
Deposit date:2007-10-09
Release date:2007-12-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Structural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger.
Mol.Cell, 28, 2007
4W7U
DownloadVisualize
BU of 4w7u by Molmil
Crystal structure of XacCel5A in the native form
Descriptor: CACODYLATE ION, Cellulase
Authors:Paiva, J.H, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-10-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of XacCel5A in the native form
To Be Published
5SQJ
DownloadVisualize
BU of 5sqj by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with Z5021668601
Descriptor: (1R,2R)-1-[4-(cyclopropylcarbamamido)benzamido]-4-hydroxy-2,3-dihydro-1H-indene-2-carboxylic acid, DIMETHYL SULFOXIDE, Non-structural protein 3
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2022-06-09
Release date:2022-07-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Iterative computational design and crystallographic screening identifies potent inhibitors targeting the Nsp3 macrodomain of SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 120, 2023
4W87
DownloadVisualize
BU of 4w87 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with a xyloglucan oligosaccharide
Descriptor: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, alpha-D-xylopyranose-(1-6)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
Deposit date:2014-08-22
Release date:2015-03-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon