PDB: 9786 resultsInfo pagesStatus searchChemie searchBIRD

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7WWK	Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab Descriptor: 55A8 light chain, Spike glycoprotein Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-02-13 Release date: 2023-02-15 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab To Be Published
7WWJ	SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 2 conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ... Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-02-13 Release date: 2023-02-15 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: EM structure of SARS-CoV-2 Omicron variant spike glycoprotein and 55A8 To Be Published
7WWI	SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ... Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-02-13 Release date: 2023-02-15 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation To Be Published
7UVF	Crystal structure of ZED8 Fab complex with CD8 alpha Descriptor: CHLORIDE ION, GLYCEROL, Immunoglobulin heavy chain, ... Authors: Yu, C, Davies, C, Koerber, J.T, Williams, S. Deposit date: 2022-05-01 Release date: 2022-10-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Preclinical development of ZED8, an 89 Zr immuno-PET reagent for monitoring tumor CD8 status in patients undergoing cancer immunotherapy. Eur J Nucl Med Mol Imaging, 50, 2023
7V23	CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 To Be Published
7V24	Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 Descriptor: Spike glycoprotein, the heavy chain of N12-9 Fab, the lignt chain of N12-9 Fab Authors: Du, S, Xiao, J. Deposit date: 2021-08-07 Release date: 2022-08-10 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Local CryoEM structure of del68-76/del679-688 prefusion-stabilized spike in complex with the Fab of N12-9 To Be Published
7WSC	Local structure of BD55-3500 and omicron RBD complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3500H, 3500L, ... Authors: Liu, P.L. Deposit date: 2022-01-28 Release date: 2023-03-01 Method: ELECTRON MICROSCOPY (3.78 Å) Cite: Local structure of BD55-3500 and omicron RBD complex To Be Published
7XJ8	SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ... Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-04-15 Release date: 2023-04-19 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation To Be Published
7XJ6	SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 1 conformation Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 55A8 heavy chain, ... Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-04-15 Release date: 2023-04-19 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 1 conformation To Be Published
7XJ9	Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab Descriptor: 55A8 heavy chain, 55A8 light chain, 58G6 heavy chain, ... Authors: Guo, H, Gao, Y, Lu, Y, Yang, H, Ji, X. Deposit date: 2022-04-15 Release date: 2023-04-19 Method: ELECTRON MICROSCOPY (3.27 Å) Cite: Local refinement of the SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab To Be Published
7XEI	SARS-CoV-2-prototyped-RBD and CB6-092-Fab complex Descriptor: CB6-092-Fab heavy chain, CB6-092-Fab light chain, Spike protein S1 Authors: Wang, Y, Feng, Y. Deposit date: 2022-03-31 Release date: 2023-05-31 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.76 Å) Cite: SARS-CoV-2-prototyped-RBD and CB6-092-Fab complex To Be Published
7XEG	SARS-CoV-2-Beta-RBD and CB6-092-Fab complex Descriptor: CB6-092-Fab heavy chain, CB6-092-Fab light chain, Spike protein S1 Authors: Wang, Y, Feng, Y. Deposit date: 2022-03-31 Release date: 2023-05-31 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.69 Å) Cite: SARS-CoV-2-Beta-RBD and CB6-092-Fab complex To Be Published
8AED	Broadly neutralizing DARPin bnD.9 in complex with the HIV-1 envelope variable loop 3 peptide V3 (BG505) Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Broadly neutralizing DARPin bnD.9, ... Authors: Mittl, P, Gloegl, M. Deposit date: 2022-07-13 Release date: 2023-08-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.17 Å) Cite: Trapping the HIV-1 V3 loop in a helical conformation enables broad neutralization. Nat.Struct.Mol.Biol., 30, 2023
6TIK	Hepatitis B virus core shell--virus-like particle with NadA epitope Descriptor: Capsid protein,Putative adhesin/invasin,Capsid protein,Factor H-binding protein Authors: Roseman, A.M, Colllins, R.F, Derrick, J.P. Deposit date: 2019-11-22 Release date: 2020-04-29 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: An assessment of the use of Hepatitis B Virus core protein virus-like particles to display heterologous antigens from Neisseria meningitidis. Vaccine, 38, 2020
1G9E	SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA Descriptor: H14 Authors: Renisio, J.-G, Perez, J, Czisch, M, Guenneugues, M, Bornet, O, Frenken, L, Cambillau, C, Darbon, H. Deposit date: 2000-11-23 Release date: 2002-10-23 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Solution structure and backbone dynamics of an antigen-free heavy chain variable domain (VHH) from Llama Proteins, 47, 2002
5O45	Structure of human PD-L1 in complex with inhibitor Descriptor: PHE-MEA-9KK-SAR-ASP-VAL-MEA-TYR-SAR-TRP-TYR-LEU-CCS-GLY-NH2, Programmed cell death 1 ligand 1 Authors: Magiera, K, Grudnik, P, Dubin, G, Holak, T.A. Deposit date: 2017-05-26 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (0.99 Å) Cite: Bioactive Macrocyclic Inhibitors of the PD-1/PD-L1 Immune Checkpoint. Angew. Chem. Int. Ed. Engl., 56, 2017
5O4Y	Structure of human PD-L1 in complex with inhibitor Descriptor: PHE-MAA-ASN-PRO-HIS-LEU-SER-TRP-SER-TRP-9KK-9KK-ARG-CCS-GLY-NH2, Programmed cell death 1 ligand 1 Authors: Magiera, K, Grudnik, P, Dubin, G, Holak, T.A. Deposit date: 2017-05-31 Release date: 2017-09-20 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Bioactive Macrocyclic Inhibitors of the PD-1/PD-L1 Immune Checkpoint. Angew. Chem. Int. Ed. Engl., 56, 2017
4ZMJ	Crystal Structure of Ligand-Free BG505 SOSIP.664 HIV-1 Env Trimer Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ... Authors: Kwon, Y.D, Kwong, P.D. Deposit date: 2015-05-04 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.31 Å) Cite: Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env. Nat.Struct.Mol.Biol., 22, 2015
6LZG	Structure of novel coronavirus spike receptor-binding domain complexed with its receptor ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, Spike protein S1, ... Authors: Wang, Q.H, Song, H, Qi, J.X. Deposit date: 2020-02-19 Release date: 2020-03-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Functional Basis of SARS-CoV-2 Entry by Using Human ACE2. Cell, 181, 2020
4FAB	THREE-DIMENSIONAL STRUCTURE OF A FLUORESCEIN-FAB COMPLEX CRYSTALLIZED IN 2-METHYL-2,4-PENTANEDIOL Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID, IGG2A-KAPPA 4-4-20 FAB (HEAVY CHAIN), ... Authors: Herron, J.N, He, X, Mason, M.L, Vossjunior, E.W, Edmundson, A.B. Deposit date: 1989-04-10 Release date: 1990-07-15 Last modified: 2017-09-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Three-dimensional structure of a fluorescein-Fab complex crystallized in 2-methyl-2,4-pentanediol. Proteins, 5, 1989
2Q3Z	Transglutaminase 2 undergoes large conformational change upon activation Descriptor: Polypeptide, SULFATE ION, Transglutaminase 2 Authors: Strop, P, Pinkas, D.M, Brunger, A.T, Khosla, C. Deposit date: 2007-05-30 Release date: 2007-10-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Transglutaminase 2 undergoes a large conformational change upon activation Plos Biol., 5, 2007
4EEF	Crystal structure of the designed inhibitor protein F-HB80.4 in complex with the 1918 influenza virus hemagglutinin. Descriptor: F-HB80.4, DESIGNED HEMAGGLUTININ BINDING PROTEIN, Hemagglutinin HA1 chain, ... Authors: Dreyfus, C, Wilson, I.A. Deposit date: 2012-03-28 Release date: 2012-06-27 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.704 Å) Cite: Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing. Nat.Biotechnol., 30, 2012
2OBE	Crystal Structure of Chimpanzee Adenovirus (Type 68/Simian 25) Major Coat Protein Hexon Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DIHYDROGENPHOSPHATE ION, Hexon protein Authors: Xue, F, Rux, J.J, Burnett, R.M. Deposit date: 2006-12-18 Release date: 2007-07-24 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure-based identification of a major neutralizing site in an adenovirus hexon J.Virol., 81, 2007
4UB0	New design for monovalent bispecific IgG through cysteine engineering of the CH1-CL interface Descriptor: IgG1, heavy chain, light chain Authors: Oganesyan, V.Y, Dall'Acqua, W.F. Deposit date: 2014-08-11 Release date: 2015-07-15 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Improving target cell specificity using a novel monovalent bispecific IgG design. Mabs, 7, 2015
1UZG	CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAJOR ENVELOPE PROTEIN E, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Modis, Y, Harrison, S.C. Deposit date: 2004-03-11 Release date: 2005-03-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein J.Virol., 79, 2005

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