PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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4G4M	Crystal structure of the de novo designed fluorinated peptide alpha4F3(6-13) Descriptor: 1,2-ETHANEDIOL, TETRAETHYLENE GLYCOL, alpha4F3(6-13) Authors: Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G. Deposit date: 2012-07-16 Release date: 2012-10-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. Protein Sci., 21, 2012
4G3B	Crystal structure of the de novo designed fluorinated peptide alpha4F3d Descriptor: ACETYL GROUP, alpha4F3d Authors: Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G. Deposit date: 2012-07-13 Release date: 2012-10-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (1.19 Å) Cite: Comparison of the structures and stabilities of coiled-coil proteins containing hexafluoroleucine and t-butylalanine provides insight into the stabilizing effects of highly fluorinated amino acid side-chains. Protein Sci., 21, 2012
7UCP	computationally designed macrocycle Descriptor: computationally designed cyclic peptide D8.3.p2 Authors: Bhardwaj, G, Baker, D, Rettie, S, Glynn, C, Sawaya, M. Deposit date: 2022-03-17 Release date: 2022-09-14 Last modified: 2022-09-28 Method: X-RAY DIFFRACTION (0.85 Å) Cite: Accurate de novo design of membrane-traversing macrocycles. Cell, 185, 2022
8QAI	X-ray crystal structure of a de novo designed single-chain parallel coiled-coil alpha-helical barrel with 7 inner helices, sc-CC-7-LI Descriptor: DI(HYDROXYETHYL)ETHER, sc-CC-7-LI Authors: Petrenas, R, Albanese, K.I, Woolfson, D.N. Deposit date: 2023-08-22 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
8QAF	X-ray crystal structure of a de novo designed single-chain antiparallel 8-helix coiled-coil alpha-helical barrel, sc-apCC-8 Descriptor: sc-apCC-8 Authors: Albanese, K.I, Petrenas, R, Woolfson, D.N. Deposit date: 2023-08-22 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
8QAB	X-ray crystal structure of a de novo designed antiparallel coiled-coil hexameric alpha-helical barrel with 4 heptad repeats, apCCHex Descriptor: 1-methoxy-2-[2-[2-[2-[2-[2-[2-[2-[2-[2-(2-methoxyethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethane, apCCHex Authors: Naudin, E.N, Albanese, K.I, Petrenas, R, Woolfson, D.N. Deposit date: 2023-08-22 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
8QAD	X-ray crystal structure of a de novo designed single-chain antiparallel 6-helix coiled-coil alpha-helical barrel, sc-apCC-6-LLIA Descriptor: DODECAETHYLENE GLYCOL, sc-apCC-6-LLIA Authors: Albanese, K.I, Petrenas, R, Woolfson, D.N. Deposit date: 2023-08-22 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
8QKD	X-ray crystal structure of a de novo designed single-chain parallel coiled-coil alpha-helical barrel with 5 inner helices, sc-CC-5-24 Descriptor: DI(HYDROXYETHYL)ETHER, sc-CC-5-24 Authors: Petrenas, R, Albanese, K.I, Woolfson, D.N. Deposit date: 2023-09-15 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
8QAC	X-ray crystal structure of a de novo designed antiparallel coiled-coil 8-helix bundle with 4 heptad repeats, antiparallel 8-helix bundle-GLIA Descriptor: antiparallel 8-helix bundle-GLIA Authors: Albanese, K.I, Dawson, W.M, Petrenas, R, Woolfson, D.N. Deposit date: 2023-08-22 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Rationally seeded computational protein design of ɑ-helical barrels. Nat.Chem.Biol., 2024
7T2F	Solution structure of the model HEEH mini protein homodimer HEEH_TK_rd5_0341 Descriptor: HEEH mini protein HEEH_TK_rd5_0341 Authors: Lemak, A, Houliston, S, Kim, T.-E, Martel, C, Rocklin, G.J, Arrowsmith, C.H. Deposit date: 2021-12-04 Release date: 2022-10-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentation. Proc.Natl.Acad.Sci.USA, 119, 2022
7S5B	Unbound State of a De novo designed Protein Binder to the Human Interleukin-7 Receptor Descriptor: Miniprotein Binder Authors: Walsh, S.T.R, Cao, L, Baker, D. Deposit date: 2021-09-10 Release date: 2022-05-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Design of protein-binding proteins from the target structure alone. Nature, 605, 2022
4QKS	Crystal Structure of 6xTrp/PV2: de novo designed beta-trefoil architecture with symmetric primary structure (L22W/L44W/L64W/L85W/L108W/L132W his Primitive Version 2) Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DE NOVO PROTEIN 6XTRP/PV2, SULFATE ION Authors: Longo, L.M, Tenorio, C.A, Blaber, M. Deposit date: 2014-06-09 Release date: 2015-01-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A single aromatic core mutation converts a designed "primitive" protein from halophile to mesophile folding. Protein Sci., 24, 2015
3O4B	Crystal structure of Symfoil-4T: de novo designed beta-trefoil architecture with symmetric primary structure Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, SULFATE ION, ... Authors: Lee, J, Blaber, M. Deposit date: 2010-07-26 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
3O4A	Crystal structure of Symfoil-2: de novo designed beta-trefoil architecture with symmetric primary structure Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, de novo designed beta-trefoil architecture with symmetric primary structure Authors: Lee, J, Blaber, M. Deposit date: 2010-07-26 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
3O4D	Crystal structure of Symfoil-4P: de novo designed beta-trefoil architecture with symmetric primary structure Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, SULFATE ION, ... Authors: Lee, J, Blaber, M. Deposit date: 2010-07-26 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
8DOA	Solution structure of a model HEEH mini-protein (HEEH_TK_rd5_0958) Descriptor: HEEH mini-protein TK_rd5_0958 Authors: Houliston, S, Kim, T.-E, Rocklin, G, Arrowsmith, C.H. Deposit date: 2022-07-12 Release date: 2022-10-05 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Dissecting the stability determinants of a challenging de novo protein fold using massively parallel design and experimentation. Proc.Natl.Acad.Sci.USA, 119, 2022
3OL0	Crystal structure of Monofoil-4P homo-trimer: de novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly Descriptor: SULFATE ION, de novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly Authors: Lee, J, Blaber, M. Deposit date: 2010-08-25 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.483 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
3O4C	Crystal structure of Symfoil-4V: de novo designed beta-trefoil architecture with symmetric primary structure Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, SULFATE ION, ... Authors: Lee, J, Blaber, M. Deposit date: 2010-07-26 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
3OGF	Crystal structure of Difoil-4P homo-trimer: de novo designed dimeric trefoil-fold sub-domain which forms homo-trimer assembly Descriptor: SULFATE ION, de novo designed dimeric trefoil-fold sub-domain which forms homo-trimer assembly Authors: Lee, J, Blaber, M. Deposit date: 2010-08-16 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.864 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
3O49	Crystal structure of Symfoil-1: de novo designed beta-trefoil architecture with symmetric primary structure Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, de novo designed beta-trefoil architecture with symmetric primary structure Authors: Lee, J, Blaber, M. Deposit date: 2010-07-26 Release date: 2010-12-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Experimental support for the evolution of symmetric protein architecture from a simple peptide motif. Proc.Natl.Acad.Sci.USA, 108, 2011
8CYK	Crystal structure of hallucinated protein HALC1_878 Descriptor: HALC1_878 Authors: Ragotte, R.J, Bera, A.K, Milles, L.F, Wicky, B.I.M, Baker, D. Deposit date: 2022-05-23 Release date: 2022-09-28 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Robust deep learning-based protein sequence design using ProteinMPNN. Science, 378, 2022
8Q63	Cryo-EM structure of IC8', a second state of yeast mitochondrial RNA polymerase transcription initiation complex with 8-mer RNA, pppGpGpUpApApApUpG Descriptor: DNA-directed RNA polymerase, mitochondrial, GUANOSINE-5'-TRIPHOSPHATE, ... Authors: Goovaerts, Q, Shen, J, Patel, S.S, Das, K. Deposit date: 2023-08-10 Release date: 2023-08-30 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: Structures illustrate step-by-step mitochondrial transcription initiation. Nature, 622, 2023
8T6E	Crystal structure of T33-28.3: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles Descriptor: T33-28.3: A, T33-28.3: B Authors: Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P. Deposit date: 2023-06-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Rapid and automated design of two-component protein nanomaterials using ProteinMPNN. Proc.Natl.Acad.Sci.USA, 121, 2024
8T6C	Crystal structure of T33-18.2: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles Descriptor: T33-18.2 : A, T33-18.2 : B Authors: Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P. Deposit date: 2023-06-15 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (1.92 Å) Cite: Rapid and automated design of two-component protein nanomaterials using ProteinMPNN. Proc.Natl.Acad.Sci.USA, 121, 2024
8T6N	Crystal structure of T33-27.1: Deep-learning sequence design of co-assembling tetrahedron protein nanoparticles Descriptor: T33-27.1 : A, T33-27.1 : B Authors: Bera, A.K, de Haas, R.J, Kang, A, Sankaran, B, King, N.P. Deposit date: 2023-06-16 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.63 Å) Cite: Rapid and automated design of two-component protein nanomaterials using ProteinMPNN. Proc.Natl.Acad.Sci.USA, 121, 2024

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