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5JG9
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BU of 5jg9 by Molmil
Crystal structure of the de novo mini protein gEHEE_06
Descriptor: CHLORIDE ION, GLYCEROL, de novo design, ...
Authors:Rupert, P.B, Johnsen, W.A.
Deposit date:2016-04-19
Release date:2016-09-28
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Accurate de novo design of hyperstable constrained peptides.
Nature, 538, 2016
6YQX
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BU of 6yqx by Molmil
Crystal structure of DeNovoTIM13, a de novo designed TIM barrel
Descriptor: CHLORIDE ION, GLYCEROL, de novo designed TIM barrel DeNovoTIM13
Authors:Romero-Romero, S, Kordes, S, Shanmugaratnam, S, Fernandez-Velasco, D.A, Hocker, B.
Deposit date:2020-04-18
Release date:2021-07-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.638 Å)
Cite:The Stability Landscape of de novo TIM Barrels Explored by a Modular Design Approach.
J.Mol.Biol., 433, 2021
8H7E
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BU of 8h7e by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) at 2.0 angstrom resolution
Descriptor: ACETATE ION, De novo ferric enterobactin esterase Syn-F4
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
8H7C
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BU of 8h7c by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T) - Pt derivative
Descriptor: ACETATE ION, CHLORIDE ION, De novo ferric enterobactin esterase Syn-F4, ...
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
8H7D
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BU of 8h7d by Molmil
Crystal structure of a de novo enzyme, ferric enterobactin esterase Syn-F4 (K4T)
Descriptor: ACETATE ION, De novo ferric enterobactin esterase Syn-F4
Authors:Kurihara, K, Umezawa, K, Donnelly, A.E, Hecht, M.H, Arai, R.
Deposit date:2022-10-19
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.
Proc.Natl.Acad.Sci.USA, 120, 2023
7OT8
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BU of 7ot8 by Molmil
DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 2)
Descriptor: DeNovoTIM6-SB, SULFATE ION
Authors:Kordes, S, Romero-Romero, S, Hocker, B.
Deposit date:2021-06-09
Release date:2021-12-15
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels.
Protein Sci., 31, 2022
2A3D
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BU of 2a3d by Molmil
SOLUTION STRUCTURE OF A DE NOVO DESIGNED SINGLE CHAIN THREE-HELIX BUNDLE (A3D)
Descriptor: PROTEIN (DE NOVO THREE-HELIX BUNDLE)
Authors:Walsh, S.T.R, Cheng, H, Bryson, J.W, Roder, H, Degrado, W.F.
Deposit date:1999-04-01
Release date:1999-05-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure and dynamics of a de novo designed three-helix bundle protein.
Proc.Natl.Acad.Sci.USA, 96, 1999
7RMY
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BU of 7rmy by Molmil
De Novo designed tunable protein pockets, D_3-337
Descriptor: De Novo designed tunable homodimer, D_3-337
Authors:Bera, A.K, Hicks, D.R, Kang, A, Sankaran, B, Baker, D.
Deposit date:2021-07-28
Release date:2022-08-03
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:De novo design of protein homodimers containing tunable symmetric protein pockets.
Proc.Natl.Acad.Sci.USA, 119, 2022
6VTW
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BU of 6vtw by Molmil
De novo protein design enables the precise induction of RSV-neutralizing antibodies
Descriptor: 101F Fab Heavy Chain, 101F Fab Light Chain, S4_2.45
Authors:Jardetzky, T, Correia, B.
Deposit date:2020-02-13
Release date:2020-04-15
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:De novo protein design enables the precise induction of RSV-neutralizing antibodies.
Science, 368, 2020
8A09
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BU of 8a09 by Molmil
A hexameric barrel state of a de novo coiled-coil assembly: CC-Type2-(QgLaId)4
Descriptor: A hexameric barrel state of a de novo coiled-coil assembly: CC-Type2-(QgLaId)4, GLYCEROL
Authors:Martin, F.J.O, Rhys, G.G, Dawson, W.M, Woolfson, D.N.
Deposit date:2022-05-27
Release date:2022-06-15
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Differential sensing with arrays of de novo designed peptide assemblies.
Nat Commun, 14, 2023
8WWC
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BU of 8wwc by Molmil
De novo design binder of HRAS -120-4
Descriptor: De novo design protein 120-4, GTPase HRas, MAGNESIUM ION, ...
Authors:Wang, L, Wang, S, Liu, Y.
Deposit date:2023-10-25
Release date:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:De novo design HRAS binder 120-4
To Be Published
8W97
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BU of 8w97 by Molmil
De novo design protein -PK16
Descriptor: De novo design protein
Authors:Wang, S, Liu, Y.
Deposit date:2023-09-04
Release date:2024-09-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:De novo design protein -PK16
To Be Published
6DS9
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BU of 6ds9 by Molmil
Elongated version of a de novo designed three helix bundle structure (GRa3D)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, THIOCYANATE ION, ...
Authors:Koebke, K.J, Ruckthong, L.R, Meagher, J.L, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2018-06-13
Release date:2018-10-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Clarifying the Copper Coordination Environment in a de Novo Designed Red Copper Protein.
Inorg Chem, 57, 2018
8WX8
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BU of 8wx8 by Molmil
De novo design protein -T09
Descriptor: De novo design protein -T09
Authors:Wang, C, Wang, S, Liu, Y.
Deposit date:2023-10-27
Release date:2024-10-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:De novo design protein -T09
To Be Published
8K8F
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BU of 8k8f by Molmil
De novo design protein -N7
Descriptor: De novo design protein N7, GLYCEROL
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-29
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:De novo design protein -N7
To Be Published
8K7Z
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BU of 8k7z by Molmil
De novo design protein -N1
Descriptor: De novo design protein
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-27
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:De novo design protein -N1
To Be Published
8K7M
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BU of 8k7m by Molmil
De novo design protein -T01
Descriptor: De novo design protein
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-26
Release date:2024-07-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:De novo design protein -T01
To Be Published
8K8G
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BU of 8k8g by Molmil
De novo design protein -N9
Descriptor: De novo design protein
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-29
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:De novo design protein -N9
To Be Published
5WLL
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BU of 5wll by Molmil
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH1
Descriptor: GLYCEROL, Helical Bundle 4DH1, ZINC ION
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2017-07-27
Release date:2018-01-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
J. Am. Chem. Soc., 140, 2018
8K7O
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BU of 8k7o by Molmil
De novo design protein -T03
Descriptor: De novo design protein
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-27
Release date:2024-07-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:De novo design protein -T03
To Be Published
5WLM
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BU of 5wlm by Molmil
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH2
Descriptor: Helical Bundle 4DH2, ZINC ION
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2017-07-27
Release date:2018-01-03
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
J. Am. Chem. Soc., 140, 2018
5WLK
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BU of 5wlk by Molmil
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2
Descriptor: Helical Bundle 4EH2, ZINC ION
Authors:Zhang, S.-Q, Liu, L, DeGrado, W.F.
Deposit date:2017-07-27
Release date:2018-01-03
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
J. Am. Chem. Soc., 140, 2018
8K8I
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BU of 8k8i by Molmil
De novo design protein -N14
Descriptor: De novo design protein -N14
Authors:Wang, S, Liu, Y.
Deposit date:2023-07-30
Release date:2024-07-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:De novo design protein -N14
To Be Published
8KAC
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BU of 8kac by Molmil
De novo design protein -NX1
Descriptor: De novo design protein -NX1
Authors:Wang, S, Liu, Y.
Deposit date:2023-08-02
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:De novo design protein -NX1
To Be Published
8KC4
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BU of 8kc4 by Molmil
De novo design protein -NA05
Descriptor: De novo design protein -NA05
Authors:Wang, S, Liu, Y.
Deposit date:2023-08-06
Release date:2024-08-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:De novo design protein -NA05
To Be Published

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PDB entries from 2024-11-06

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