PDB: 243911 resultsInfo pagesStatus searchChemie searchBIRD

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2P65	Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax Descriptor: Hypothetical protein PF08_0063 Authors: Wernimont, A.K, Lew, J, Kozieradzki, I, Lin, Y.H, Hassanali, A, Zhao, Y, Arrowsmith, C.H, Edwards, A.M, Weigelt, J, Sundstrom, M, Bochkarev, A, Hui, R, Artz, J.D, Structural Genomics Consortium (SGC) Deposit date: 2007-03-16 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of the first nucleotide binding domain of chaperone ClpB1, putative, (Pv089580) from Plasmodium Vivax To be Published
9GE8	Structure of E. coli YbbAP-TesA with bound ATP analogue Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Thioesterase 1/protease 1/lysophospholipase L1, ... Authors: McAndrew, M.B.L, Crow, A. Deposit date: 2024-08-07 Release date: 2025-05-28 Method: ELECTRON MICROSCOPY (4.55 Å) Cite: Structure of YbbAP-TesA: a Type VII ABC transporter lipid-hydrolase complex Biorxiv, 2025
9GE6	Structure of E. coli YbbAP Descriptor: Uncharacterized ABC transporter ATP-binding protein YbbA, Uncharacterized ABC transporter permease YbbP Authors: McAndrew, M.B.L, Crow, A. Deposit date: 2024-08-07 Release date: 2025-05-28 Method: ELECTRON MICROSCOPY (4.05 Å) Cite: Structure of YbbAP-TesA: a Type VII ABC transporter lipid-hydrolase complex Biorxiv, 2025
7REG	DfrA1 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228) Descriptor: 4'-chloro-3'-[(2S)-4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl][1,1'-biphenyl]-4-carboxamide, CALCIUM ION, Dihydrofolate reductase type 1, ... Authors: Lombardo, M.N, Wright, D.L. Deposit date: 2021-07-12 Release date: 2022-07-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Structure-guided functional studies of plasmid-encoded dihydrofolate reductases reveal a common mechanism of trimethoprim resistance in Gram-negative pathogens. Commun Biol, 5, 2022
1MIE	Crystal Structure Of The Fab Fragment of Esterolytic Antibody MS5-393 Descriptor: IMMUNOGLOBULIN MS5-393 Authors: Ruzheinikov, S.N, Muranova, T.A, Sedelnikova, S.E, Partridge, L.J, Blackburn, G.M, Murray, I.A, Kakinuma, H, Takashi, N, Shimazaki, K, Sun, J, Nishi, Y, Rice, D.W. Deposit date: 2002-08-23 Release date: 2003-09-23 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.95 Å) Cite: High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity J.Mol.Biol., 332, 2003
9GE7	Structure of E. coli YbbAP with bound ATP analogue Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Uncharacterized ABC transporter ATP-binding protein YbbA, ... Authors: McAndrew, M.B.L, Crow, A. Deposit date: 2024-08-07 Release date: 2025-05-28 Method: ELECTRON MICROSCOPY (3.66 Å) Cite: Structure of YbbAP-TesA: a Type VII ABC transporter lipid-hydrolase complex Biorxiv, 2025
1ME4	High Resolution Crystal Structure Analysis Of Cruzain non-covalently Bound To A Hydroxymethyl Ketone Inhibitor (I) Descriptor: CRUZIPAIN, [1-(1-BENZYL-3-HYDROXY-2-OXO-PROPYLCARBAMOYL)-2-PHENYL-ETHYL]-CARBAMIC ACID BENZYL ESTER Authors: Brinen, L.S, Huang, L, Ellman, J.A. Deposit date: 2002-08-07 Release date: 2002-12-18 Last modified: 2024-12-25 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Crystal Structures of Reversible Ketone-based Inhibitors of the Cysteine Protease Cruzain Bioorg.Med.Chem., 11, 2003
9G75	Mouse mitochondrial DNA polymerase gamma ternary complex in intermediate conformer Descriptor: DNA (primer strand), DNA (template strand), DNA polymerase subunit gamma-1, ... Authors: Valenzuela, S, Falkenberg, M. Deposit date: 2024-07-19 Release date: 2025-06-04 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity. Nat Commun, 16, 2025
7RAF	AncAR1-Rev - progesterone - Tif2 Descriptor: Ancestral androgen receptor, GLYCEROL, PROGESTERONE, ... Authors: Colucci, J.K. Deposit date: 2021-07-01 Release date: 2022-07-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.551 Å) Cite: AncAR1-Rev - progesterone - Tif2 To Be Published
1MEI	Inosine Monophosphate Dehydrogenase (IMPDH) From Tritrichomonas Foetus with XMP and mycophenolic acid bound Descriptor: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE, MYCOPHENOLIC ACID, POTASSIUM ION, ... Authors: Prosise, G.L, Luecke, H. Deposit date: 2002-08-08 Release date: 2003-08-12 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structures of Tritrichomonas foetus Inosine Monophosphate Dehydrogenase in Complex with Substrate, Cofactor and Analogs: A Structural Basis for the Random-in Ordered-out Kinetic Mechanism J.Mol.Biol., 326, 2003
9G8E	N2 domain of g3p from phage fd Descriptor: Attachment protein Authors: Weininger, U, Jakob, R.P. Deposit date: 2024-07-23 Release date: 2025-06-04 Method: SOLUTION NMR Cite: Phi-Value and NMR Structural Analysis of a Coupled Native-State Prolyl Isomerization and Conformational Protein Folding Process. Biomolecules, 15, 2025
7RHC	A new fluorescent protein darkmRuby at pH 9.0 Descriptor: 1,2-ETHANEDIOL, darkmRuby Authors: Huang, M, Ng, H.L, Zhang, S, Deng, M, Chu, J. Deposit date: 2021-07-16 Release date: 2022-07-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A Long-range Interaction Affects Brightness and pH Stability of a Dark Fluorescent Protein To Be Published
1MIV	Crystal structure of Bacillus stearothermophilus CCA-adding enzyme Descriptor: MAGNESIUM ION, tRNA CCA-adding enzyme Authors: Li, F, Xiong, Y, Wang, J, Cho, H.D, Weiner, A.M, Steitz, T.A. Deposit date: 2002-08-23 Release date: 2002-12-13 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Crystal structures of the Bacillus stearothermophilus CCA-adding enzyme and its complexes with ATP or CTP Cell(Cambridge,Mass.), 111, 2002
7RK5	Mannitol-2-dehydrogenase bound to NADH from Aspergillus fumigatus Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Mannitol 2-dehydrogenase Authors: Nguyen, S, Bruning, J.B. Deposit date: 2021-07-22 Release date: 2022-07-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Targeting the Mannitol Biosynthesis Pathway in Aspergillus fumigatus: Characterisation and Inhibition of Mannitol-2-Dehydrogenase To Be Published
1MJH	Structure-based assignment of the biochemical function of hypothetical protein MJ0577: A test case of structural genomics Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, PROTEIN (ATP-BINDING DOMAIN OF PROTEIN MJ0577) Authors: Zarembinski, T.I, Hung, L.-W, Mueller-Dieckmann, H.J, Kim, K.-K, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC) Deposit date: 1998-11-04 Release date: 1998-12-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics. Proc.Natl.Acad.Sci.USA, 95, 1998
9G77	Mouse mitochondrial DNA polymerase gamma ternary complex in error-editing conformer (composite) Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ... Authors: Valenzuela, S, Falkenberg, M. Deposit date: 2024-07-19 Release date: 2025-06-04 Method: ELECTRON MICROSCOPY (2.87 Å) Cite: Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity. Nat Commun, 16, 2025
9G74	Mouse mitochondrial DNA polymerase gamma ternary complex in replication conformer Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (primer strand), ... Authors: Valenzuela, S, Falkenberg, M. Deposit date: 2024-07-19 Release date: 2025-06-04 Last modified: 2025-07-09 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Modelling POLG mutations in mice unravels a critical role of POL gamma Beta in regulating phenotypic severity. Nat Commun, 16, 2025
1MEU	HIV-1 MUTANT (V82F, I84V) PROTEASE COMPLEXED WITH DMP323 Descriptor: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE Authors: Ala, P, Chang, C.-H. Deposit date: 1997-04-11 Release date: 1998-04-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Molecular basis of HIV-1 protease drug resistance: structural analysis of mutant proteases complexed with cyclic urea inhibitors. Biochemistry, 36, 1997
1MF5	GCATGCT Quadruplex Descriptor: 5'-D(*GP*CP*AP*TP*GP*CP*T)-3', COBALT HEXAMMINE(III) Authors: Thorpe, J.H, Teixeira, S.C.M, Gale, B.C, Cardin, C.J. Deposit date: 2002-08-09 Release date: 2003-02-11 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Crystal structure of the complementary quadruplex formed by d(GCATGCT) at atomic resolution Nucleic Acids Res., 31, 2003
9GIK	Full-lenght Nedd4-2 E3 ubiquitin ligase Descriptor: Isoform 5 of E3 ubiquitin-protein ligase NEDD4-like Authors: Kosek, D, Janosev, M, Obsil, T, Obsilova, V. Deposit date: 2024-08-19 Release date: 2025-06-04 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Structural basis of ubiquitin ligase Nedd4-2 autoinhibition and regulation by calcium and 14-3-3 proteins. Nat Commun, 16, 2025
1MME	THE CRYSTAL STRUCTURE OF AN ALL-RNA HAMMERHEAD RIBOZYME: A PROPOSED MECHANISM FOR RNA CATALYTIC CLEAVAGE Descriptor: RNA HAMMERHEAD RIBOZYME Authors: Scott, W.G, Finch, J.T, Klug, A. Deposit date: 1995-12-09 Release date: 1996-02-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell(Cambridge,Mass.), 81, 1995
7RNM	Estrogen Receptor Alpha Ligand Binding Domain Y537S Mutant in Complex with 2-(2-Chloro-5-phenylthieno[2,3-d]pyrimidin-4-yl)isoindolin-5-ol and GRIP Peptide Descriptor: 2-(2-chloro-5-phenylthieno[2,3-d]pyrimidin-4-yl)-2,3-dihydro-1H-isoindol-5-ol, Estrogen receptor, Nuclear receptor coactivator 2 Authors: Joiner, C, Sammeta, V.K.R, Norris, J.D, McDonnell, D.P, Willson, T.M, Fanning, S.W. Deposit date: 2021-07-29 Release date: 2022-08-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Determinants of the Binding and Activation of Estrogen Receptor alpha by Phenolic Thieno[2,3-d]pyrimidines Helv.Chim.Acta, 106, 2023
9GA8	The crystal structure of human Annexin A4 from crystals grown at 4 mM Calcium Descriptor: Annexin A4, CALCIUM ION, SULFATE ION Authors: Ruggiero, A, Barra, G, Ghilardi, O, Scala, M.C, Sala, M, Di Micco, S, Bifulco, G, Campiglia, P, Vitagliano, L. Deposit date: 2024-07-26 Release date: 2025-06-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Computational, crystallographic, and biophysical characterizations provide insights into calcium and phosphate binding by human annexin A4. Int.J.Biol.Macromol., 308, 2025
9GA7	The crystal structure of human Annexin A4 derived from crystal grown at 4 mM CaCl2 and retro-soaking Descriptor: Annexin A4, CALCIUM ION, SULFATE ION Authors: Vitagliano, L, Barra, G, Ghilardi, O, Di Micco, S, Scala, M.C, Sala, M, Campiglia, P, Bifulco, G, Ruggiero, A. Deposit date: 2024-07-26 Release date: 2025-06-04 Method: X-RAY DIFFRACTION (1.446 Å) Cite: Computational, crystallographic, and biophysical characterizations provide insights into calcium and phosphate binding by human annexin A4. Int.J.Biol.Macromol., 308, 2025
1MMM	DISTINCT METAL ENVIRONMENT IN IRON-SUBSTITUTED MANGANESE SUPEROXIDE DISMUTASE PROVIDES A STRUCTURAL BASIS OF METAL SPECIFICITY Descriptor: FE (III) ION, HYDROXIDE ION, PROTEIN (IRON-SUBSTITUTED MANGANESE SUPEROXIDE DISMUTASE) Authors: Edwards, R.A, Whittaker, M.M, Whittaker, J.W, Jameson, G.B, Baker, E.N. Deposit date: 1998-08-26 Release date: 1998-09-02 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Distinct Metal Environment in Fe-Substituted Manganese Superoxide Dismutase Provides a Structural Basis of Metal Specificity J.Am.Chem.Soc., 120, 1998

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