Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8CUF
DownloadVisualize
BU of 8cuf by Molmil
Synthetic epi-Novo29 (2R,3S), X-ray diffractometer structure
Descriptor: ACETATE ION, IODIDE ION, Synthetic epi-Novo29 (2R,3S)
Authors:Kreutzer, A.G, Li, X, Krumberger, M, Nowick, J.S.
Deposit date:2022-05-17
Release date:2023-01-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Synthesis and Stereochemical Determination of the Peptide Antibiotic Novo29.
J.Org.Chem., 88, 2023
8CU7
DownloadVisualize
BU of 8cu7 by Molmil
Crystal structure of A2AAR-StaR2-bRIL in complex with a novel A2a antagonist, LJ-4517
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2R,3R,4R)-2-[(8P)-6-amino-2-(hex-1-yn-1-yl)-8-(thiophen-2-yl)-9H-purin-9-yl]oxolane-3,4-diol, Adenosine receptor A2a,Soluble cytochrome b562, ...
Authors:Shiriaeva, A, Park, D.-J, Kim, G, Lee, Y, Hou, X, Jarhad, D.B, Kim, G, Yu, J, Hyun, Y.E, Kim, W, Gao, Z.-G, Jacobson, K.A, Han, G.W, Stevens, R.C, Jeong, L.S, Choi, S, Cherezov, V.
Deposit date:2022-05-16
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:GPCR Agonist-to-Antagonist Conversion: Enabling the Design of Nucleoside Functional Switches for the A 2A Adenosine Receptor.
J.Med.Chem., 65, 2022
8CTZ
DownloadVisualize
BU of 8ctz by Molmil
12-mer DNA structure of ExBIM & O6Me-G bound to RNase-H
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*(OWR)P*GP*CP*G)-3'), ...
Authors:Pallan, P.S, Egli, M.
Deposit date:2022-05-16
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Conformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Chem.Res.Toxicol., 35, 2022
8CTY
DownloadVisualize
BU of 8cty by Molmil
12-mer DNA structure of ExBIM bound to RNase-H
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Pallan, P.S, Egli, M.
Deposit date:2022-05-16
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Conformation and Pairing Properties of an O 6 -Methyl-2'-deoxyguanosine-Directed Benzimidazole Nucleoside Analog in Duplex DNA.
Chem.Res.Toxicol., 35, 2022
8CTR
DownloadVisualize
BU of 8ctr by Molmil
Crystal Structure of dTDP-4-dehydrorhamnose reductase from Klebsiella pneumoniae with bound NADP
Descriptor: ACETATE ION, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-05-16
Release date:2022-06-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of dTDP-4-dehydrorhamnose reductase from Klebsiella pneumoniae with bound NADP
to be published
8CTF
DownloadVisualize
BU of 8ctf by Molmil
The N-terminal domain of PA endonuclease from the influenza H1N1 viral polymerase in complex with 3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid
Descriptor: 3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid, ACETATE ION, MANGANESE (II) ION, ...
Authors:Kohlbrand, A.J, Stokes, R.W, Karges, J, Seo, H, Sankaran, B, Cohen, S.M.
Deposit date:2022-05-14
Release date:2022-12-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Carboxylic Acid Isostere Derivatives of Hydroxypyridinones as Core Scaffolds for Influenza Endonuclease Inhibitors.
Acs Med.Chem.Lett., 14, 2023
8CTB
DownloadVisualize
BU of 8ctb by Molmil
Human PRMT5:MEP50 structure with Fragment 3 and MTA Bound
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, 7-chloro-1-methyl-1H-benzimidazol-2-amine, Methylosome protein 50, ...
Authors:Gunn, R.J, Lawson, J.D, Smith, C.R.
Deposit date:2022-05-13
Release date:2022-10-05
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Fragment optimization and elaboration strategies - the discovery of two lead series of PRMT5/MTA inhibitors from five fragment hits.
Rsc Med Chem, 13, 2022
8CSG
DownloadVisualize
BU of 8csg by Molmil
Human PRMT5:MEP50 structure with Fragment 1 and MTA Bound
Descriptor: 1,2-ETHANEDIOL, 5'-DEOXY-5'-METHYLTHIOADENOSINE, 6-bromo-1H-pyrrolo[3,2-b]pyridin-5-amine, ...
Authors:Gunn, R.J, Lawson, J.D, Smith, C.R.
Deposit date:2022-05-12
Release date:2022-10-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Fragment optimization and elaboration strategies - the discovery of two lead series of PRMT5/MTA inhibitors from five fragment hits.
Rsc Med Chem, 13, 2022
8CRV
DownloadVisualize
BU of 8crv by Molmil
Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, Carbamate kinase, FORMIC ACID, ...
Authors:Kim, Y, Skarina, T, Mesa, N, Stogios, P, Savchenko, S, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2022-05-11
Release date:2022-08-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of the Carbamate Kinase from Pseudomonas aeruginosa
To Be Published
8CQP
DownloadVisualize
BU of 8cqp by Molmil
Crystal structure of an 8-repeat consensus TPR superhelix with Calcium (low concentration)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Liutkus, M, Rojas, A.L, Cortajarena, A.L.
Deposit date:2023-03-07
Release date:2024-03-27
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Diverse crystalline protein scaffolds through metal-dependent polymorphism.
Protein Sci., 33, 2024
8CQ3
DownloadVisualize
BU of 8cq3 by Molmil
Bifunctional chorismate mutase/cyclohexadienyl dehydratase from Aequoribacter fuscus
Descriptor: ACETATE ION, CHLORIDE ION, chorismate mutase
Authors:Khatanbaatar, T, Cordara, G, Krengel, U.
Deposit date:2023-03-03
Release date:2023-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Novel exported fusion enzymes with chorismate mutase and cyclohexadienyl dehydratase activity: Shikimate pathway enzymes teamed up in no man's land.
J.Biol.Chem., 299, 2023
8CP8
DownloadVisualize
BU of 8cp8 by Molmil
Crystal structure of an 8-repeat consensus TPR superhelix with Lead
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Liutkus, M, Rojas, A.L, Cortajarena, A.L.
Deposit date:2023-03-02
Release date:2024-03-13
Last modified:2024-04-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Diverse crystalline protein scaffolds through metal-dependent polymorphism.
Protein Sci., 33, 2024
8COT
DownloadVisualize
BU of 8cot by Molmil
Complex of human soluble adenylyl cyclase 10 catalytic core with inhibitor TDI-10962
Descriptor: 1,2-ETHANEDIOL, 2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate, ACETATE ION, ...
Authors:Steegborn, C, Fushimi, M.
Deposit date:2023-02-28
Release date:2023-04-26
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Scaffold Hopping and Optimization of Small Molecule Soluble Adenyl Cyclase Inhibitors Led by Free Energy Perturbation.
J.Chem.Inf.Model., 63, 2023
8COM
DownloadVisualize
BU of 8com by Molmil
Structure of the Nucleosome Core Particle from Trypanosoma brucei
Descriptor: Histone H2A, Histone H2B, Histone H3, ...
Authors:Burdett, H, Deak, G, Wilson, M.D.
Deposit date:2023-02-28
Release date:2023-07-12
Last modified:2023-09-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Histone divergence in trypanosomes results in unique alterations to nucleosome structure.
Nucleic Acids Res., 51, 2023
8COK
DownloadVisualize
BU of 8cok by Molmil
Structural analysis of ING3 protein and its binding to histone H3
Descriptor: Inhibitor of growth protein 3
Authors:Ferreras-Gutierrez, M, Medrano, F.J, Blanco, F.J.
Deposit date:2023-02-28
Release date:2023-05-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structural analysis of ING3 protein and histone H3 binding.
Int.J.Biol.Macromol., 242, 2023
8COJ
DownloadVisualize
BU of 8coj by Molmil
Crystal structure of human soluble adenylyl cyclase catalytic domain in complex with the inhibitor TDI-10228
Descriptor: 1,2-ETHANEDIOL, 4-chloranyl-6-[4-[(3-fluorophenyl)methyl]-1-methyl-pyrazol-3-yl]pyrimidin-2-amine, ACETATE ION, ...
Authors:Steegborn, C, Fushimi, M.
Deposit date:2023-02-28
Release date:2023-04-26
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Scaffold Hopping and Optimization of Small Molecule Soluble Adenyl Cyclase Inhibitors Led by Free Energy Perturbation.
J.Chem.Inf.Model., 63, 2023
8CO7
DownloadVisualize
BU of 8co7 by Molmil
Crystal structure of human soluble adenylyl cyclase (sAC) in complex with inhibitor TDI-09066
Descriptor: 1,2-ETHANEDIOL, 4-chloranyl-6-[1-methyl-4-(thiophen-2-ylmethyl)pyrazol-3-yl]pyrimidin-2-amine, ACETATE ION, ...
Authors:Steegborn, C.
Deposit date:2023-02-27
Release date:2024-01-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Scaffold Hopping and Optimization of Small Molecule Soluble Adenyl Cyclase Inhibitors Led by Free Energy Perturbation.
J.Chem.Inf.Model., 63, 2023
8CO1
DownloadVisualize
BU of 8co1 by Molmil
Type II Secretion System
Descriptor: IPT/TIG domain-containing protein, Lipoprotein, Probable type IV piliation system protein DR_0774
Authors:Farci, D, Piano, D.
Deposit date:2023-02-26
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural characterization and functional insights into the type II secretion system of the poly-extremophile Deinococcus radiodurans.
J.Biol.Chem., 300, 2024
8CNS
DownloadVisualize
BU of 8cns by Molmil
The Hybrid Cluster Protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus in a mixed redox state after soaking with hydroxylamine, at 1.36-A resolution.
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ...
Authors:Lemaire, O.N, Wagner, T.
Deposit date:2023-02-24
Release date:2023-04-19
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural and biochemical elucidation of class I hybrid cluster protein natively extracted from a marine methanogenic archaeon.
Front Microbiol, 14, 2023
8CNR
DownloadVisualize
BU of 8cnr by Molmil
Hybrid Cluster Protein from the thermophilic methanogen Methanothermococcus thermolithotrophicus as isolated in a reduced state at 1.45-A resolution
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 1,2-ETHANEDIOL, 2-ETHOXYETHANOL, ...
Authors:Lemaire, O.N, Wagner, T.
Deposit date:2023-02-24
Release date:2023-04-19
Last modified:2023-06-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural and biochemical elucidation of class I hybrid cluster protein natively extracted from a marine methanogenic archaeon.
Front Microbiol, 14, 2023
8CNN
DownloadVisualize
BU of 8cnn by Molmil
BeF3 Phospho-HRas GSA complex
Descriptor: ACETATE ION, BERYLLIUM TRIFLUORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Baumann, P, Jin, Y.
Deposit date:2023-02-23
Release date:2023-09-27
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Far-reaching effects of tyrosine64 phosphorylation on Ras revealed with BeF 3 - complexes.
Commun Chem, 7, 2024
8CNH
DownloadVisualize
BU of 8cnh by Molmil
Crystal structure of human soluble adenylyl cyclase (sAC) in complex with inhibitor TDI-10512
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Adenylate cyclase type 10, ...
Authors:Steegborn, C.
Deposit date:2023-02-23
Release date:2023-04-26
Last modified:2023-05-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Scaffold Hopping and Optimization of Small Molecule Soluble Adenyl Cyclase Inhibitors Led by Free Energy Perturbation.
J.Chem.Inf.Model., 63, 2023
8CMW
DownloadVisualize
BU of 8cmw by Molmil
A225L variant of the CODH/ACS complex of C. hydrogenoformans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CO-methylating acetyl-CoA synthase, ...
Authors:Ruickoldt, J, Jeoung, J, Lennartz, F, Dobbek, H.
Deposit date:2023-02-21
Release date:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A225L variant of the CODH/ACS complex of C. hydrogenoformans
To Be Published
8CM6
DownloadVisualize
BU of 8cm6 by Molmil
W-formate dehydrogenase C872A from Desulfovibrio vulgaris - with Formamide
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, CHLORIDE ION, ...
Authors:Vilela-Alves, G, Mota, C, Oliveira, A.R, Manuel, R.R, Pereira, I.C, Romao, M.J.
Deposit date:2023-02-17
Release date:2023-09-27
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (1.416 Å)
Cite:An allosteric redox switch involved in oxygen protection in a CO 2 reductase.
Nat.Chem.Biol., 20, 2024
8CKE
DownloadVisualize
BU of 8cke by Molmil
PBP AccA from A.tumefaciens C58 in complex with agrocinopine A in space group I222
Descriptor: 1,2-ETHANEDIOL, 2-O-phosphono-alpha-L-arabinopyranose, 2-O-phosphono-beta-L-arabinopyranose, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2023-02-15
Release date:2024-01-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.298 Å)
Cite:A highly conserved ligand-binding site for AccA transporters of antibiotic and quorum-sensing regulator in Agrobacterium leads to a different specificity.
Biochem.J., 481, 2024

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon