PDB: 1006 resultsInfo pagesStatus searchChemie searchBIRD

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7EA7	crystal structure of NAP1 LIR in complex with GABARAP Descriptor: Gamma-aminobutyric acid receptor-associated protein, NAP1_LIR motif Authors: Fu, T, Pan, L. Deposit date: 2021-03-06 Release date: 2021-12-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structural and biochemical advances on the recruitment of the autophagy-initiating ULK and TBK1 complexes by autophagy receptor NDP52. Sci Adv, 7, 2021
2QDJ	Crystal structure of the Retinoblastoma protein N-domain provides insight into tumor suppression, ligand interaction and holoprotein architecture Descriptor: Retinoblastoma-associated protein Authors: Hassler, M, Mittnacht, S, Pearl, L.H. Deposit date: 2007-06-21 Release date: 2008-01-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the retinoblastoma protein N domain provides insight into tumor suppression, ligand interaction, and holoprotein architecture. Mol.Cell, 28, 2007
6Y09	Crystal structure of Atg16L in complex with GTP-bound Rab33B (Q92L) Descriptor: 1,2-ETHANEDIOL, Autophagy-related protein 16-1, DI(HYDROXYETHYL)ETHER, ... Authors: Pantoom, S, Wu, Y.W. Deposit date: 2020-02-07 Release date: 2020-09-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein. Autophagy, 17, 2021
6ZAY	Crystal structure of Atg16L in complex with GDP-bound Rab33B Descriptor: 1,2-ETHANEDIOL, Autophagy-related protein 16-1, DI(HYDROXYETHYL)ETHER, ... Authors: Pantoom, S, Wu, Y.W. Deposit date: 2020-06-06 Release date: 2020-09-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: RAB33B recruits the ATG16L1 complex to the phagophore via a noncanonical RAB binding protein. Autophagy, 17, 2021
3POM	Crystal Structure of the Unliganded Retinoblastoma Protein Pocket Domain Descriptor: Retinoblastoma-associated protein Authors: Balog, E.R.M, Burke, J.R, Rubin, S.M. Deposit date: 2010-11-23 Release date: 2011-04-27 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of the unliganded retinoblastoma protein pocket domain. Proteins, 79, 2011
5XUY	Crystal structure of ATG101-ATG13HORMA Descriptor: Autophagy-related protein 101, Autophagy-related protein 13 Authors: Kim, B.-W, Song, H.K. Deposit date: 2017-06-26 Release date: 2018-07-04 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation. Autophagy, 14, 2018
5XV6	Crystal structure of ATG101-ATG13HORMA Descriptor: Autophagy-related protein 101, Autophagy-related protein 13 Authors: Kim, B.-W, Song, H.K. Deposit date: 2017-06-26 Release date: 2018-07-04 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.455 Å) Cite: The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation. Autophagy, 14, 2018
5XV4	Crystal structure of ATG101-ATG13HORMA Descriptor: Autophagy-related protein 101, Autophagy-related protein 13 Authors: Kim, B.-W, Song, H.K. Deposit date: 2017-06-26 Release date: 2018-07-04 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.95 Å) Cite: The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation. Autophagy, 14, 2018
5XV3	Crystal structure of ATG101-ATG13HORMA Descriptor: Autophagy-related protein 101, Autophagy-related protein 13, DI(HYDROXYETHYL)ETHER Authors: Kim, B.-W, Song, H.K. Deposit date: 2017-06-26 Release date: 2018-07-04 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.57 Å) Cite: The C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation. Autophagy, 14, 2018
2AZE	Structure of the Rb C-terminal domain bound to an E2F1-DP1 heterodimer Descriptor: Retinoblastoma-associated protein, Transcription factor Dp-1, Transcription factor E2F1 Authors: Rubin, S.M, Gall, A.L, Zheng, N, Pavletich, N.P. Deposit date: 2005-09-10 Release date: 2006-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release. Cell(Cambridge,Mass.), 123, 2005
2R7G	Structure of the retinoblastoma protein pocket domain in complex with adenovirus E1A CR1 domain Descriptor: Early E1A 32 kDa protein, Retinoblastoma-associated protein, SULFATE ION Authors: Liu, X, Marmorstein, R. Deposit date: 2007-09-07 Release date: 2007-10-02 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.671 Å) Cite: Structure of the retinoblastoma protein bound to adenovirus E1A reveals the molecular basis for viral oncoprotein inactivation of a tumor suppressor Genes Dev., 21, 2007
1RKD	E. COLI RIBOKINASE COMPLEXED WITH RIBOSE AND ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, PHOSPHATE ION, RIBOKINASE, ... Authors: Sigrell, J.A, Cameron, A.D, Jones, T.A, Mowbray, S.L. Deposit date: 1997-11-29 Release date: 1998-03-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Structure of Escherichia coli ribokinase in complex with ribose and dinucleotide determined to 1.8 A resolution: insights into a new family of kinase structures. Structure, 6, 1998
1RKS	E. COLI RIBOKINASE IN COMPLEX WITH D-RIBOSE Descriptor: PHOSPHATE ION, PROTEIN (RIBOKINASE), alpha-D-ribofuranose Authors: Sigrell, J.A, Cameron, A.D, Mowbray, S.L. Deposit date: 1999-05-17 Release date: 1999-08-31 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Induced fit on sugar binding activates ribokinase. J.Mol.Biol., 290, 1999
4ELL	Structure of the inactive retinoblastoma protein pocket domain Descriptor: Retinoblastoma-associated protein Authors: Burke, J.R, Rubin, S.M. Deposit date: 2012-04-10 Release date: 2012-05-23 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control. Genes Dev., 26, 2012
4ELJ	Crystal structure of the inactive retinoblastoma protein phosphorylated at T373 Descriptor: Retinoblastoma-associated protein Authors: Burke, J.R, Rubin, S.M. Deposit date: 2012-04-10 Release date: 2012-05-23 Last modified: 2017-08-23 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structures of inactive retinoblastoma protein reveal multiple mechanisms for cell cycle control. Genes Dev., 26, 2012
5Z9S	Functional and Structural Characterization of a beta-Glucosidase Involved in Saponin Metabolism from Intestinal Bacteria Descriptor: Glycosyl hydrolase family 3 protein, beta-D-glucopyranose Authors: Yan, S, Wei, P.C, Li, J.R. Deposit date: 2018-02-05 Release date: 2018-03-14 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Functional and structural characterization of a beta-glucosidase involved in saponin metabolism from intestinal bacteria. Biochem. Biophys. Res. Commun., 496, 2018
7O3V	Stalk complex structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Descriptor: TrwI protein, TrwJ protein Authors: Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. Deposit date: 2021-04-03 Release date: 2022-06-22 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7O41	Hexameric composite model of the Inner Membrane Complex (IMC) with the Arches from the fully-assembled R388 type IV secretion system determined by cryo-EM. Descriptor: TrwG protein, TrwK protein, TrwM protein Authors: Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. Deposit date: 2021-04-04 Release date: 2022-06-22 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (7.6 Å) Cite: Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
6OJX	PilT4 from Geobacter metallireducens bound to ATP Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-12 Release date: 2019-11-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.892 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
6OKV	PilT4 from Geobacter metallireducens bound to AMP-PNP: C2ccocco conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-15 Release date: 2019-11-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (4.007 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
6OLM	CryoEM structure of PilT4 from Geobacter metallireducens with added ATP: C6cccccc conformation Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Twitching motility pilus retraction ATPase Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-16 Release date: 2019-11-20 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
6OLK	CryoEM structure of PilT4 from Geobacter metallireducens without adding nucleotide: C3ocococ conformation Descriptor: Twitching motility pilus retraction ATPase Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-16 Release date: 2019-11-20 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
6OJZ	PilT4 from Geobacter metallireducens bound to ADP with partial occupancy: C3ocococ conformation Descriptor: ADENOSINE-5'-DIPHOSPHATE, Twitching motility pilus retraction ATPase Authors: McCallum, M, Howell, P.L. Deposit date: 2019-04-12 Release date: 2019-11-20 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.027 Å) Cite: Multiple conformations facilitate PilT function in the type IV pilus. Nat Commun, 10, 2019
7OIU	Inner Membrane Complex (IMC) protomer structure (TrwM/VirB3, TrwK/VirB4, TrwG/VirB8tails) from the fully-assembled R388 type IV secretion system determined by cryo-EM. Descriptor: TrwG protein, TrwK protein, TrwM protein Authors: Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. Deposit date: 2021-05-12 Release date: 2022-06-22 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7Q1V	Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type IV secretion system determined by cryo-EM. Descriptor: TrwG protein Authors: Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. Deposit date: 2021-10-21 Release date: 2022-06-22 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (6.18 Å) Cite: Cryo-EM structure of a type IV secretion system. Nature, 607, 2022

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