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8BKH
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BU of 8bkh by Molmil
Carboxymyoglobin dark state for comparison with power titration and 23 / 101 mJ/cm2 time series
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Barends, T, Schlichting, I.
Deposit date:2022-11-09
Release date:2024-01-31
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Influence of pump laser fluence on ultrafast myoglobin structural dynamics.
Nature, 626, 2024
8BEI
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BU of 8bei by Molmil
Structure of hexameric subcomplexes (Truncation Delta2-6) of the fractal citrate synthase from Synechococcus elongatus PCC7942
Descriptor: Citrate synthase
Authors:Lo, Y.K, Bohn, S, Sendker, F.L, Schuller, J.M, Hochberg, G.
Deposit date:2022-10-21
Release date:2024-02-28
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Emergence of fractal geometries in the evolution of a metabolic enzyme.
Nature, 628, 2024
7PW5
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BU of 7pw5 by Molmil
Human SMG1-8-9 kinase complex with AlphaFold predicted SMG8 C-terminus, bound to a SMG1 inhibitor
Descriptor: 1-[4-[4-[2-[[4-chloranyl-3-(diethylsulfamoyl)phenyl]amino]pyrimidin-4-yl]pyridin-2-yl]phenyl]-3-methyl-urea, ADENOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, ...
Authors:Langer, L.M, Conti, E.
Deposit date:2021-10-06
Release date:2021-12-01
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM reconstructions of inhibitor-bound SMG1 kinase reveal an autoinhibitory state dependent on SMG8.
Elife, 10, 2021
7Q03
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BU of 7q03 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the close state with NADP and Mg2+
Descriptor: 1,2-ETHANEDIOL, 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, GLYCEROL, ...
Authors:Lemaire, O.N, Mueller, M, Wagner, T.
Deposit date:2021-10-14
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
2DM5
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BU of 2dm5 by Molmil
Thermodynamic Penalty Arising From Burial of a Ligand Polar Group Within a Hydrophobic Pocket of a Protein Receptor
Descriptor: CADMIUM ION, Major Urinary Protein, OCTANE-1,8-DIOL
Authors:Barratt, E, Bronowska, A, Vondrasek, J, Bingham, R, Phillips, S, Homans, S.W.
Deposit date:2006-04-20
Release date:2006-10-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Thermodynamic penalty arising from burial of a ligand polar group within a hydrophobic pocket of a protein receptor
J.Mol.Biol., 362, 2006
7Q07
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BU of 7q07 by Molmil
Ketol-acid reductoisomerase from Methanothermococcus thermolithotrophicus in the open state with NADP and tartrate
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Ketol-Acid Reductoisomerase from Methanothermococcus thermolithotrophicus, ...
Authors:Lemaire, O.N, Mueller, M, Wagner, T.
Deposit date:2021-10-14
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Rearrangements of a Dodecameric Ketol-Acid Reductoisomerase Isolated from a Marine Thermophilic Methanogen.
Biomolecules, 11, 2021
7Q5P
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BU of 7q5p by Molmil
Structure of VgrG1 from Pseudomonas protegens.
Descriptor: Type VI secretion protein VgrG
Authors:Guenther, P, Quentin, D, Ahmad, S, Sachar, K, Gatsogiannis, C, Whitney, J.C, Raunser, S.
Deposit date:2021-11-04
Release date:2021-12-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a bacterial Rhs effector exported by the type VI secretion system.
Plos Pathog., 18, 2022
7Q97
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BU of 7q97 by Molmil
Structure of the bacterial type VI secretion system effector RhsA.
Descriptor: Rhs family protein
Authors:Guenther, P, Quentin, D, Ahmad, S, Sachar, K, Gatsogiannis, C, Whitney, J.C, Raunser, S.
Deposit date:2021-11-12
Release date:2021-12-22
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of a bacterial Rhs effector exported by the type VI secretion system.
Plos Pathog., 18, 2022
7QDZ
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BU of 7qdz by Molmil
80S-bound human SKI complex in the closed state
Descriptor: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), Tetratricopeptide repeat protein 37, ...
Authors:Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
Deposit date:2021-12-01
Release date:2022-02-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QE0
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BU of 7qe0 by Molmil
80S-bound human SKI complex in the open state
Descriptor: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
Authors:Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
Deposit date:2021-12-01
Release date:2022-02-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (6.5 Å)
Cite:The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
8BPX
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BU of 8bpx by Molmil
Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete composition)
Descriptor: (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE, 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, ...
Authors:Klusch, N, Kuehlbrandt, W.
Deposit date:2022-11-18
Release date:2023-01-25
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.09 Å)
Cite:Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution.
Nat.Plants, 9, 2023
7QDS
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BU of 7qds by Molmil
Apo human SKI complex in the open state
Descriptor: Helicase SKI2W, Tetratricopeptide repeat protein 37, WD repeat-containing protein 61
Authors:Koegel, A, Keidel, A, Bonneau, A, Schaefer, I.B, Conti, E.
Deposit date:2021-11-30
Release date:2022-02-02
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QLA
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BU of 7qla by Molmil
Structure of the Rab GEF complex Mon1-Ccz1
Descriptor: Ccz1, Vacuolar fusion protein MON1
Authors:Klink, B.U, Herrmann, E, Antoni, C, Langemeyer, L, Kiontke, S, Gatsogiannis, C, Ungermann, C, Raunser, S, Kuemmel, D.
Deposit date:2021-12-20
Release date:2022-02-09
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.85 Å)
Cite:Structure of the Mon1-Ccz1 complex reveals molecular basis of membrane binding for Rab7 activation.
Proc.Natl.Acad.Sci.USA, 119, 2022
2PHW
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BU of 2phw by Molmil
Pterocarpus angolensis lectin (PAL) in complex with Man-9
Descriptor: CALCIUM ION, Lectin, MANGANESE (II) ION, ...
Authors:Garcia-Pino, A, Buts, L, Wyns, L, Imberty, A, Loris, R.
Deposit date:2007-04-12
Release date:2007-07-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:How a plant lectin recognizes high mannose oligosaccharides
Plant Physiol., 144, 2007
7QDR
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BU of 7qdr by Molmil
Apo human SKI complex in the closed state
Descriptor: Helicase SKI2W, Tetratricopeptide repeat protein 37, WD repeat-containing protein 61
Authors:Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
Deposit date:2021-11-29
Release date:2022-02-02
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
7QIO
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BU of 7qio by Molmil
Homology model of myosin neck domain in skeletal sarcomere
Descriptor: Myosin light chain 1/3, skeletal muscle isoform, Myosin regulatory light chain 2, ...
Authors:Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
Deposit date:2021-12-15
Release date:2022-02-16
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
7QDY
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BU of 7qdy by Molmil
RNA-bound human SKI complex
Descriptor: Helicase SKI2W, RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3'), Tetratricopeptide repeat protein 37, ...
Authors:Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E.
Deposit date:2021-12-01
Release date:2022-02-09
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism.
Mol.Cell, 82, 2022
8BQ5
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BU of 8bq5 by Molmil
Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 1 composition)
Descriptor: 2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONE, AT3G07480.1, Acyl carrier protein 1, ...
Authors:Klusch, N, Kuehlbrandt, W.
Deposit date:2022-11-18
Release date:2023-03-22
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Cryo-EM structure of the respiratory I + III 2 supercomplex from Arabidopsis thaliana at 2 angstrom resolution.
Nat.Plants, 9, 2023
7QIN
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BU of 7qin by Molmil
In situ structure of actomyosin complex in skeletal sarcomere
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
Deposit date:2021-12-15
Release date:2022-02-16
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (6.6 Å)
Cite:Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
8CDK
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BU of 8cdk by Molmil
CAND1 b-hairpin++-SCF-SKP2 CAND1 partly engaged SCF partly rocked
Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
Authors:Baek, K, Schulman, B.A.
Deposit date:2023-01-31
Release date:2023-04-19
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
8CDJ
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BU of 8cdj by Molmil
CAND1 b-hairpin++-SCF-SKP2 CAND1 rolling SCF engaged
Descriptor: Cullin-1, Cullin-associated NEDD8-dissociated protein 1, E3 ubiquitin-protein ligase RBX1, ...
Authors:Baek, K, Schulman, B.A.
Deposit date:2023-01-31
Release date:2023-04-19
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Systemwide disassembly and assembly of SCF ubiquitin ligase complexes.
Cell, 186, 2023
7QIM
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BU of 7qim by Molmil
In situ structure of nebulin bound to actin filament in skeletal sarcomere
Descriptor: ACTS protein, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Wang, Z, Grange, M, Pospich, S, Wagner, T, Kho, A.L, Gautel, M, Raunser, S.
Deposit date:2021-12-15
Release date:2022-03-16
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures from intact myofibrils reveal mechanism of thin filament regulation through nebulin.
Science, 375, 2022
8CEI
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BU of 8cei by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD)
Descriptor: Succinate-semialdehyde dehydrogenase (acetylating)
Authors:Pfister, P, Diehl, C, Erb, T.J.
Deposit date:2023-02-02
Release date:2023-05-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023
8CEJ
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BU of 8cej by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with Mesaconyl-C1-CoA
Descriptor: (2E)-2-METHYLBUT-2-ENEDIOIC ACID, Mesaconyl Coenzme A, Succinate-semialdehyde dehydrogenase (acetylating)
Authors:Pfister, P, Diehl, C, Erb, T.J.
Deposit date:2023-02-02
Release date:2023-05-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023
8CEK
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BU of 8cek by Molmil
Succinyl-CoA Reductase from Clostridium kluyveri (SucD) with NADPH
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Succinate-semialdehyde dehydrogenase (acetylating)
Authors:Pfister, P, Diehl, C, Erb, T.J.
Deposit date:2023-02-02
Release date:2023-05-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Enhancing the Substrate Specificity of Clostridium Succinyl-CoA Reductase for Synthetic Biology and Biocatalysis.
Biochemistry, 62, 2023

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PDB entries from 2025-07-09

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