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4D9I
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BU of 4d9i by Molmil
Crystal structure of holo Diaminopropionate ammonia lyase from Escherichia coli
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Diaminopropionate ammonia-lyase
Authors:Bisht, S, Rajaram, V, Bharath, S.R, Murthy, M.R.N.
Deposit date:2012-01-11
Release date:2012-04-25
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Escherichia coli Diaminopropionate Ammonia-lyase Reveals Mechanism of Enzyme Activation and Catalysis
J.Biol.Chem., 287, 2012
5T98
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BU of 5t98 by Molmil
Crystal structure of BuGH2Awt
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glycoside Hydrolase
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2016-09-09
Release date:2017-09-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Nat Commun, 9, 2018
7GAN
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BU of 7gan by Molmil
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z56767614
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Microtubule-associated proteins 1A/1B light chain 3B, ...
Authors:Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-10
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:PanDDA analysis group deposition
To Be Published
4MQ9
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BU of 4mq9 by Molmil
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme in complex with GE23077
Descriptor: (2Z)-2-methylbut-2-enoic acid, DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
Authors:Ho, M.X, Arnold, E, Ebright, R.H, Zhang, Y, Tuske, S.
Deposit date:2013-09-16
Release date:2014-05-07
Last modified:2025-08-13
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
5TA1
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BU of 5ta1 by Molmil
Crystal structure of BuGH86wt
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Pluvinage, B, Boraston, A.B.
Deposit date:2016-09-09
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont.
Nat Commun, 9, 2018
1IDB
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BU of 1idb by Molmil
Crystal structures of HIV-2 protease in complex with inhibitors containing the hydroxyethylamine dipeptide isostere
Descriptor: (2R,4S)-N-tert-butyl-1-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutyl]-4-(pyridin-4-ylsulfonyl)piperidine-2-carboxamide, Protease
Authors:Tong, L, Anderson, P.C.
Deposit date:1994-10-19
Release date:1995-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of HIV-2 protease in complex with inhibitors containing the hydroxyethylamine dipeptide isostere.
Structure, 3, 1995
5OTL
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BU of 5otl by Molmil
The crystal structure of CK2alpha in complex with compound 29
Descriptor: ACETATE ION, Casein kinase II subunit alpha, DI(HYDROXYETHYL)ETHER, ...
Authors:Brear, P, De Fusco, C, Iegre, J, Yoshida, M, Mitchell, S, Rossmann, M, Carro, L, Sore, H, Hyvonen, M, Spring, D.
Deposit date:2017-08-22
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Second-generation CK2 alpha inhibitors targeting the alpha D pocket.
Chem Sci, 9, 2018
6HWD
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BU of 6hwd by Molmil
Yeast 20S proteasome beta2-G45A mutant in complex with bortezomib
Descriptor: CHLORIDE ION, MAGNESIUM ION, N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
5T9N
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BU of 5t9n by Molmil
Structure of rabbit RyR1 (Ca2+-only dataset, class 2)
Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ...
Authors:Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J.
Deposit date:2016-09-09
Release date:2016-10-12
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural Basis for Gating and Activation of RyR1.
Cell, 167, 2016
7GA8
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BU of 7ga8 by Molmil
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z1198158918
Descriptor: 1,2-ETHANEDIOL, 1H-indazole-3-carbonitrile, CHLORIDE ION, ...
Authors:Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-10
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:PanDDA analysis group deposition
To Be Published
7HJH
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BU of 7hjh by Molmil
PanDDA analysis group deposition -- Crystal structure of ABLE in complex with ZINC000000159056
Descriptor: 1-methyl-5-phenyl-1H-pyrazole-4-carboxylic acid, De novo designed ABLE protein
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2024-10-08
Release date:2025-08-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Fragment screen against ABLE
To be published
7GAG
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BU of 7gag by Molmil
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z198195770
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Microtubule-associated proteins 1A/1B light chain 3B, ...
Authors:Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-10
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:PanDDA analysis group deposition
To Be Published
5YQW
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BU of 5yqw by Molmil
Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICKEL (II) ION, ...
Authors:Suginta, W, Sritho, N, Ranok, A, Kitaoku, Y, Bulmer, D.M, van den Berg, B, Fukamizo, T.
Deposit date:2017-11-08
Release date:2018-02-21
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marineVibriobacteria.
J. Biol. Chem., 293, 2018
7GAO
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BU of 7gao by Molmil
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z57450788
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Microtubule-associated proteins 1A/1B light chain 3B, ...
Authors:Kumar, A, Marples, P.G, Tomlinson, C.W.E, Fearon, D, von-Delft, F, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2023-08-10
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:PanDDA analysis group deposition
To Be Published
8T6G
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BU of 8t6g by Molmil
Identification of GDC-1971 (RLY-1971), a SHP2 inhibitor designed for the treatment of solid tumors
Descriptor: (1S)-1-{6-[(1S)-1-amino-1,3-dihydrospiro[indene-2,4'-piperidin]-1'-yl]-3-(3,4-dihydro-1,5-naphthyridin-1(2H)-yl)-1H-pyrazolo[3,4-b]pyrazin-5-yl}ethan-1-ol, SULFATE ION, Tyrosine-protein phosphatase non-receptor type 11
Authors:Tang, Y, Nugyen, V, Wilbur, J.D.
Deposit date:2023-06-15
Release date:2023-10-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Identification of GDC-1971 (RLY-1971), a SHP2 Inhibitor Designed for the Treatment of Solid Tumors.
J.Med.Chem., 66, 2023
3I85
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BU of 3i85 by Molmil
The Crystal Structure of Human EMMPRIN N-terminal Domain 1
Descriptor: Cervical EMMPRIN
Authors:Luo, J, Gilliland, G.L.
Deposit date:2009-07-09
Release date:2009-10-06
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the EMMPRIN N-terminal domain 1: Dimerization via beta-strand swapping.
Proteins, 77, 2009
1I8U
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BU of 1i8u by Molmil
FAMILY 9 CARBOHYDRATE-BINDING MODULE FROM THERMOTOGA MARITIMA XYLANASE 10A
Descriptor: CALCIUM ION, ENDO-1,4-BETA-XYLANASE A
Authors:Notenboom, V, Boraston, A.B, Warren, R.A.J, Kilburn, D.G, Rose, D.R.
Deposit date:2001-03-16
Release date:2001-06-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of the family 9 carbohydrate-binding module from Thermotoga maritima xylanase 10A in native and ligand-bound forms.
Biochemistry, 40, 2001
5YQ8
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BU of 5yq8 by Molmil
Crystal structure of retroviral protease-like domain of Ddi1 from Leishmania major
Descriptor: DNA-damage inducible protein DDI1-like protein
Authors:Suguna, K, Kumar, S.
Deposit date:2017-11-06
Release date:2018-09-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal structure of the retroviral protease-like domain of a protozoal DNA damage-inducible 1 protein.
FEBS Open Bio, 8, 2018
5D5C
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BU of 5d5c by Molmil
In meso in situ serial X-ray crystallography structure of lysozyme at 100 K
Descriptor: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, ACETIC ACID, BROMIDE ION, ...
Authors:Huang, C.-Y, Olieric, V, Diederichs, K, Wang, M, Caffrey, M.
Deposit date:2015-08-10
Release date:2016-01-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:In meso in situ serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures.
Acta Crystallogr D Struct Biol, 72, 2016
6UIJ
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BU of 6uij by Molmil
Crystal Structure of Danio rerio Histone Deacetylase 10 in Complex with S-{5-[(3-aminopropyl)amino]pentyl} thioacetate
Descriptor: 5-[(3-aminopropyl)amino]pentane-1-thiol, PHOSPHATE ION, POTASSIUM ION, ...
Authors:Herbst-Gervasoni, C.J, Christianson, D.W.
Deposit date:2019-10-01
Release date:2019-12-04
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Binding ofN8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies for Blocking Polyamine Deacetylation.
Biochemistry, 58, 2019
7HJD
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BU of 7hjd by Molmil
PanDDA analysis group deposition -- Crystal structure of ABLE in complex with ZINC000000164504
Descriptor: 1,3-benzodioxol-5-ol, De novo designed ABLE protein
Authors:Correy, G.J, Fraser, J.S.
Deposit date:2024-10-08
Release date:2025-08-20
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Fragment screen against ABLE
To be published
6HTR
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BU of 6htr by Molmil
Yeast 20S proteasome with human beta2c (S171G) in complex with 13
Descriptor: (2~{S})-~{N}-[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, MAGNESIUM ION, PROTEASOME SUBUNIT ALPHA TYPE-1, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-04
Release date:2019-01-30
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
7ZO5
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BU of 7zo5 by Molmil
L1 metallo-beta-lactamase in complex with a mecillinam degradation product
Descriptor: (2~{R},4~{S})-2-[(1~{R})-2-(azepan-1-yl)-1-formamido-2-oxidanylidene-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid, Metallo-beta-lactamase L1, SULFATE ION, ...
Authors:Hinchliffe, P, Spencer, J.
Deposit date:2022-04-24
Release date:2023-03-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Interactions of hydrolyzed beta-lactams with the L1 metallo-beta-lactamase: Crystallography supports stereoselective binding of cephem/carbapenem products.
J.Biol.Chem., 299, 2023
5TAW
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BU of 5taw by Molmil
Structure of rabbit RyR1 (ryanodine dataset, all particles)
Descriptor: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ...
Authors:Clarke, O.B, des Georges, A, Zalk, R, Marks, A.R, Hendrickson, W.A, Frank, J.
Deposit date:2016-09-10
Release date:2016-10-12
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural Basis for Gating and Activation of RyR1.
Cell, 167, 2016
9H4E
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BU of 9h4e by Molmil
trans-aconitate decarboxylase Tad1- wild type binding with glycerol
Descriptor: GLYCEROL, MAGNESIUM ION, Trans-aconitate decarboxylase 1
Authors:Zheng, L, Bang, G.
Deposit date:2024-10-18
Release date:2025-03-19
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Mechanistic and structural insights into the itaconate-producing trans -aconitate decarboxylase Tad1.
Pnas Nexus, 4, 2025

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