Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HO4
DownloadVisualize
BU of 6ho4 by Molmil
TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM44693
Descriptor: 4-[2-(4-methylpentyl)-1,3-thiazol-4-yl]-~{N}-[3,3,3-tris(fluoranyl)propyl]benzamide, GLYCEROL, HTH-type transcriptional regulator EthR
Authors:Wintjens, R, Wohlkonig, A.
Deposit date:2018-09-17
Release date:2018-12-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A comprehensive analysis of the protein-ligand interactions in crystal structures of Mycobacterium tuberculosis EthR.
Biochim Biophys Acta Proteins Proteom, 1867, 2018
4Y5Y
DownloadVisualize
BU of 4y5y by Molmil
Diabody 330 complex with EpoR
Descriptor: Erythropoietin receptor, GLYCEROL, diabody 330 VH domain, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-03-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
8PFE
DownloadVisualize
BU of 8pfe by Molmil
Crystal Structure of an Hexavariant of the b1 Domain of Human Neuropilin-1 in Complex with the KDKPPR Peptide
Descriptor: ACETATE ION, LYS-ASP-LYS-PRO-PRO-ARG, Neuropilin-1
Authors:Jelsch, C, Favier, F, Didierjean, C.
Deposit date:2023-06-15
Release date:2023-08-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:New Crystal Form of Human Neuropilin-1 b1 Fragment with Six Electrostatic Mutations Complexed with KDKPPR Peptide Ligand.
Molecules, 28, 2023
1KWZ
DownloadVisualize
BU of 1kwz by Molmil
Rat mannose protein A (H189V) complexed with Man-a13-Man
Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN A, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
8R6G
DownloadVisualize
BU of 8r6g by Molmil
A quadruplex-duplex hybrid with a three-layered chair G-quadruplex topology
Descriptor: DNA (33-MER)
Authors:Vianney, Y.M, Weisz, K.
Deposit date:2023-11-22
Release date:2024-03-13
Last modified:2024-07-10
Method:SOLUTION NMR
Cite:Structural Differences at Quadruplex-Duplex Interfaces Enable Ligand-Induced Topological Transitions.
Adv Sci, 11, 2024
1KX0
DownloadVisualize
BU of 1kx0 by Molmil
Rat mannose protein A (H189V I207V) complexed with man-a13-man
Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN A, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2021-10-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
1KWV
DownloadVisualize
BU of 1kwv by Molmil
Rat mannose binding protein A complexed with a-Me-GlcNAc
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
6TLS
DownloadVisualize
BU of 6tls by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,6-DIBROMOBENZOTRIAZOLE
Descriptor: 5,7-bis(bromanyl)-1~{H}-benzotriazole, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
4Y5X
DownloadVisualize
BU of 4y5x by Molmil
Diabody 305 complex with EpoR
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, Erythropoietin receptor, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-03-18
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
1KWU
DownloadVisualize
BU of 1kwu by Molmil
Rat mannose binding protein A complexed with a-Me-Man
Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN A, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
1KWW
DownloadVisualize
BU of 1kww by Molmil
Rat mannose protein A complexed with a-Me-Fuc.
Descriptor: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN A, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
1KX1
DownloadVisualize
BU of 1kx1 by Molmil
Rat mannose protein A complexed with Man6-GlcNAc2-Asn
Descriptor: CALCIUM ION, MANNOSE-BINDING PROTEIN A, alpha-D-mannopyranose, ...
Authors:Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I.
Deposit date:2002-01-30
Release date:2002-07-05
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition.
J.Biol.Chem., 277, 2002
6HOA
DownloadVisualize
BU of 6hoa by Molmil
TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM44830
Descriptor: 4-[2-(2-propylpyridin-4-yl)-1,3-thiazol-4-yl]-~{N}-[3,3,3-tris(fluoranyl)propyl]benzamide, GLYCEROL, HTH-type transcriptional regulator EthR
Authors:Wintjens, R, Wohlkonig, A.
Deposit date:2018-09-17
Release date:2018-12-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A comprehensive analysis of the protein-ligand interactions in crystal structures of Mycobacterium tuberculosis EthR.
Biochim Biophys Acta Proteins Proteom, 1867, 2018
4Y5V
DownloadVisualize
BU of 4y5v by Molmil
Diabody 305 complex with EpoR
Descriptor: DI(HYDROXYETHYL)ETHER, Diabody 305 VL domain, Erythropoietin receptor, ...
Authors:Moraga, I, Guo, F, Ozkan, E, Jude, K.M, Garcia, K.C.
Deposit date:2015-02-12
Release date:2015-04-29
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Tuning Cytokine Receptor Signaling by Re-orienting Dimer Geometry with Surrogate Ligands.
Cell, 160, 2015
6TLL
DownloadVisualize
BU of 6tll by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,5,6,7-TETRABROMOBENZOTRIAZOLE (tBBT)
Descriptor: 4,5,6,7-TETRABROMOBENZOTRIAZOLE, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
6TLV
DownloadVisualize
BU of 6tlv by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 5-BROMOBENZOTRIAZOLE
Descriptor: 6-bromanyl-1~{H}-benzotriazole, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
6TLO
DownloadVisualize
BU of 6tlo by Molmil
HUMAN CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 4,5,6-TRIBROMOBENZOTRIAZOLE
Descriptor: 5,6,7-tris(bromanyl)-1~{H}-benzotriazole, CHLORIDE ION, Casein kinase II subunit alpha, ...
Authors:Czapinska, H, Piasecka, A, Winiewska-Szajewska, M, Bochtler, M, Poznanski, J.
Deposit date:2019-12-03
Release date:2020-12-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Halogen Atoms in the Protein-Ligand System. Structural and Thermodynamic Studies of the Binding of Bromobenzotriazoles by the Catalytic Subunit of Human Protein Kinase CK2.
J.Phys.Chem.B, 125, 2021
6I7C
DownloadVisualize
BU of 6i7c by Molmil
Dye type peroxidase Aa from Streptomyces lividans: imidazole complex
Descriptor: Deferrochelatase/peroxidase, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Moreno-Chicano, T, Ebrahim, A.E, Worrall, J.A.R, Strange, R.W, Axford, D, Sherrell, D.A, Sugimoto, H, Tono, K, Owada, S, Duyvesteyn, H.
Deposit date:2018-11-16
Release date:2019-11-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:High-throughput structures of protein-ligand complexes at room temperature using serial femtosecond crystallography.
Iucrj, 6, 2019
6I7F
DownloadVisualize
BU of 6i7f by Molmil
Dehaloperoxidase B from Amphitrite ornata - complex with 2,4-dichlorophenol
Descriptor: 2,4-dichlorophenol, Dehaloperoxidase B, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Moreno-Chicano, T, Ebrahim, A.E, Worrall, J.A.R, Strange, R.W, Axford, D, Sherrell, D.A, Sugimoto, H, Tono, K, Owada, S, Duyvesteyn, H.
Deposit date:2018-11-16
Release date:2019-11-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:High-throughput structures of protein-ligand complexes at room temperature using serial femtosecond crystallography.
Iucrj, 6, 2019
6W4G
DownloadVisualize
BU of 6w4g by Molmil
Hepatitis C virus polymerase NS5B with RO inhibitor for SAR studies
Descriptor: 5-[[(2~{S})-4-[1,1-bis(oxidanylidene)-1,2-benzothiazol-3-yl]-2-~{tert}-butyl-3-oxidanyl-5-oxidanylidene-2~{H}-pyrrol-1-yl]methyl]-2-fluoranyl-benzenecarbonitrile, NS5B
Authors:Harris, S.F.
Deposit date:2020-03-10
Release date:2020-11-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Identification of Noncompetitive Protein-Ligand Interactions for Structural Optimization.
J.Chem.Inf.Model., 60, 2020
7YEP
DownloadVisualize
BU of 7yep by Molmil
2-APB bound state of mTRPV2
Descriptor: 2-aminoethyl diphenylborinate, Transient receptor potential cation channel subfamily V member 2
Authors:Su, N.
Deposit date:2022-07-06
Release date:2022-08-17
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structural mechanisms of TRPV2 modulation by endogenous and exogenous ligands.
Nat.Chem.Biol., 19, 2023
7WJ3
DownloadVisualize
BU of 7wj3 by Molmil
Crystal structure of HLA-C*1402 complexed with 4-mer lipopeptide
Descriptor: 1,2-ETHANEDIOL, 4-mer lipopeptide, Beta-2-microglobulin, ...
Authors:Kuroha, J, Morita, D, Asa, M, Sugita, M.
Deposit date:2022-01-05
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.56343615 Å)
Cite:Crystal structures of N-myristoylated lipopeptide-bound HLA class I complexes indicate reorganization of B-pocket architecture upon ligand binding.
J.Biol.Chem., 298, 2022
7WT4
DownloadVisualize
BU of 7wt4 by Molmil
Crystal structure of HLA-A*2402 complexed with 8-mer Influenza PB1 peptide
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Asa, M, Morita, D, Sugita, M.
Deposit date:2022-02-03
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.89459145 Å)
Cite:Crystal structures of N-myristoylated lipopeptide-bound HLA class I complexes indicate reorganization of B-pocket architecture upon ligand binding.
J.Biol.Chem., 298, 2022
7WT5
DownloadVisualize
BU of 7wt5 by Molmil
Crystal structure of HLA-A*2450 complexed with 8-mer model peptide
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 8-mer model peptide, ...
Authors:Asa, M, Morita, D, Sugita, M.
Deposit date:2022-02-03
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.0950768 Å)
Cite:Crystal structures of N-myristoylated lipopeptide-bound HLA class I complexes indicate reorganization of B-pocket architecture upon ligand binding.
J.Biol.Chem., 298, 2022
7WJ2
DownloadVisualize
BU of 7wj2 by Molmil
Crystal structure of HLA-C*1402 complexed with 8-mer HIV gag peptide
Descriptor: 1,2-ETHANEDIOL, 8-mer peptide, ACETATE ION, ...
Authors:Kuroha, J, Morita, D, Asa, M, Sugita, M.
Deposit date:2022-01-05
Release date:2022-06-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Crystal structures of N-myristoylated lipopeptide-bound HLA class I complexes indicate reorganization of B-pocket architecture upon ligand binding.
J.Biol.Chem., 298, 2022

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon