Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

9FYQ
DownloadVisualize
BU of 9fyq by Molmil
Cryo-EM structure of native SV2A in complex with TeNT-Hc, gangliosides and Pro-Macrobody 5
Descriptor: (2~{R},4~{R},5~{S},6~{S})-2-[(2~{R},3~{R})-3-[(2~{R},3~{S},4~{S},6~{S})-6-[(2~{S},3~{S},4~{R},5~{S},6~{S})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-(hydroxymethyl)-6-[(2~{R},3~{R},4~{R},5~{R},6~{S})-2-(hydroxymethyl)-6-[2-(octadecanoylamino)-3-oxidanyl-octadec-4-enoxy]-4,5-bis(oxidanyl)oxan-3-yl]oxy-5-oxidanyl-oxan-4-yl]oxy-3-azanyl-6-carboxy-4-oxidanyl-oxan-2-yl]-2,3-bis(oxidanyl)propoxy]-5-azanyl-4-oxidanyl-6-[(1~{R},2~{S})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid, (2~{S},4~{S},5~{R},6~{S})-5-acetamido-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-[(2~{R},3~{R},4~{S},5~{R},6~{S})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-4-[(2~{S},4~{S},5~{S},6~{S})-5-acetamido-2-carboxy-4-oxidanyl-6-[(1~{S},2~{R})-1,2,3-tris(oxidanyl)propyl]oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-[2-(docosanoylamino)-3-oxidanyl-octadec-4-enoxy]-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-2-(hydroxymethyl)-5-oxidanyl-oxan-3-yl]oxy-6-(hydroxymethyl)-5-oxidanyl-3-(2-oxidanylidenepropyl)oxan-4-yl]oxy-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl]oxy-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Schenck, S, Brunner, J.D.
Deposit date:2024-07-03
Release date:2025-05-21
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structures of native SV2A reveal the binding mode for tetanus neurotoxin and anti-epileptic racetams.
Nat Commun, 16, 2025
9FYR
DownloadVisualize
BU of 9fyr by Molmil
Cryo-EM structure of native SV2A in complex with TeNT-Hc, Pro-Macrobody 5 and Levetiracetam
Descriptor: (2S)-2-(2-oxidanylidenepyrrolidin-1-yl)butanamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Schenck, S, Brunner, J.D.
Deposit date:2024-07-03
Release date:2025-05-21
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of native SV2A reveal the binding mode for tetanus neurotoxin and anti-epileptic racetams.
Nat Commun, 16, 2025
9G4N
DownloadVisualize
BU of 9g4n by Molmil
Glycoside Hydrolase Family 157 from Labilibaculum antarcticum (LaGH157) E224A mutant in complex with Laminaritriose and Glucose
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glycoside hydrolase family 2 catalytic domain-containing protein, ...
Authors:Caseiro, C, Alves, V.D, Carvalho, A.L, Bule, P.
Deposit date:2024-07-15
Release date:2025-05-21
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Family GH157 enzyme exhibits broad linkage tolerance and a dual endo/exo-beta-glucanase activity on beta-glucans.
Int.J.Biol.Macromol., 282, 2024
1MCO
DownloadVisualize
BU of 1mco by Molmil
THREE-DIMENSIONAL STRUCTURE OF A HUMAN IMMUNOGLOBULIN WITH A HINGE DELETION
Descriptor: IGG1 MCG INTACT ANTIBODY (HEAVY CHAIN), IGG1 MCG INTACT ANTIBODY (LIGHT CHAIN), N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-L-gulopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Guddat, L.W, Edmundson, A.B.
Deposit date:1993-02-25
Release date:1994-01-31
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Three-dimensional structure of a human immunoglobulin with a hinge deletion.
Proc.Natl.Acad.Sci.Usa, 90, 1993
1MJT
DownloadVisualize
BU of 1mjt by Molmil
CRYSTAL STRUCTURE OF SANOS, A BACTERIAL NITRIC OXIDE SYNTHASE OXYGENASE PROTEIN, IN COMPLEX WITH NAD+ AND SEITU
Descriptor: ETHYLISOTHIOUREA, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, NITRIC-OXIDE SYNTHASE HOMOLOG, ...
Authors:Bird, L.E, Ren, J, Stammers, D.K.
Deposit date:2002-08-28
Release date:2003-01-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure of SANOS, a Bacterial Nitric Oxide Synthase Oxygenase Protein from Staphylococcus aureus
Structure, 10, 2002
9FYE
DownloadVisualize
BU of 9fye by Molmil
Structure of the Sabia Virus spike complex in an open conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G1, ...
Authors:Diskin, R, Cohen-Dvashi, H.
Deposit date:2024-07-03
Release date:2025-06-11
Last modified:2025-09-17
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Metal-induced conformational changes in the Sabia virus spike complex.
Nat Microbiol, 10, 2025
1MQ8
DownloadVisualize
BU of 1mq8 by Molmil
Crystal structure of alphaL I domain in complex with ICAM-1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin alpha-L, ...
Authors:Shimaoka, M, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, McCormack, A, Zhang, R, Joachimiak, A, Takagi, J, Wang, J.-H, Springer, T.A.
Deposit date:2002-09-15
Release date:2003-01-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation
Cell(Cambridge,Mass.), 112, 2003
9FYG
DownloadVisualize
BU of 9fyg by Molmil
Structure of the Sabia Virus spike complex H157M mutant in a closed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G1, ...
Authors:Diskin, R, Cohen-Dvashi, H.
Deposit date:2024-07-03
Release date:2025-06-11
Last modified:2025-09-17
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Metal-induced conformational changes in the Sabia virus spike complex.
Nat Microbiol, 10, 2025
9GQQ
DownloadVisualize
BU of 9gqq by Molmil
influenza neuraminidase N1/19 hybrid
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Bowden, T.A, Paesen, G.C, Rijal, P.
Deposit date:2024-09-09
Release date:2025-06-11
Last modified:2025-10-22
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structure-guided loop grafting improves expression and stability of influenza neuraminidase for vaccine development.
Elife, 14, 2025
1LXM
DownloadVisualize
BU of 1lxm by Molmil
Crystal Structure of Streptococcus agalactiae Hyaluronate Lyase Complexed with Hexasaccharide Unit of Hyaluronan
Descriptor: HYALURONATE Lyase, beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Mello, L.V, de Groot, B.L, Li, S, Jedrzejas, M.J.
Deposit date:2002-06-05
Release date:2002-10-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure and flexibility of Streptococcus agalactiae hyaluronate lyase complex with its substrate. Insights into the mechanism of processive degradation of hyaluronan.
J.Biol.Chem., 277, 2002
9FYA
DownloadVisualize
BU of 9fya by Molmil
Structure of the Sabia Virus spike complex in a closed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycoprotein G1, ...
Authors:Diskin, R, Cohen-Dvashi, H.
Deposit date:2024-07-03
Release date:2025-06-11
Last modified:2025-09-17
Method:ELECTRON MICROSCOPY (2.64 Å)
Cite:Metal-induced conformational changes in the Sabia virus spike complex.
Nat Microbiol, 10, 2025
9GQT
DownloadVisualize
BU of 9gqt by Molmil
influenza neuraminidase hybrid N1/09
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Bowden, T.A, Paesen, G.C.
Deposit date:2024-09-09
Release date:2025-06-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure-guided loop grafting improves expression and stability of influenza neuraminidase for vaccine development.
Elife, 14, 2025
1LYA
DownloadVisualize
BU of 1lya by Molmil
CRYSTAL STRUCTURES OF NATIVE AND INHIBITED FORMS OF HUMAN CATHEPSIN D: IMPLICATIONS FOR LYSOSOMAL TARGETING AND DRUG DESIGN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CATHEPSIN D, alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Baldwin, E.T, Bhat, T.N, Gulnik, S, Erickson, J.W.
Deposit date:1993-04-22
Release date:1994-01-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of native and inhibited forms of human cathepsin D: implications for lysosomal targeting and drug design.
Proc.Natl.Acad.Sci.USA, 90, 1993
9GQX
DownloadVisualize
BU of 9gqx by Molmil
influenza neuraminidase mSN1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Pramila, R, Paesen, G.C, Bowden, T.A.
Deposit date:2024-09-10
Release date:2025-06-11
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structure-guided loop grafting improves expression and stability of influenza neuraminidase for vaccine development.
Elife, 14, 2025
1MPM
DownloadVisualize
BU of 1mpm by Molmil
MALTOPORIN MALTOSE COMPLEX
Descriptor: MAGNESIUM ION, MALTOPORIN, alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Dutzler, R, Schirmer, T.
Deposit date:1996-01-11
Release date:1997-03-12
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway.
Structure, 4, 1996
8IDO
DownloadVisualize
BU of 8ido by Molmil
Crystal structure of nanobody VHH-T148 with MERS-CoV RBD
Descriptor: Spike protein S1, VHH-T148, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, X, Tian, L.
Deposit date:2023-02-14
Release date:2024-02-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein
To Be Published
8IDM
DownloadVisualize
BU of 8idm by Molmil
Crystal structure of nanobody VHH-227 with nanobody VHH-T71 and MERS-CoV RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, ...
Authors:Wang, X, Tian, L.
Deposit date:2023-02-13
Release date:2024-02-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.59 Å)
Cite:Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity
To Be Published
1LZR
DownloadVisualize
BU of 1lzr by Molmil
STRUCTURAL CHANGES OF THE ACTIVE SITE CLEFT AND DIFFERENT SACCHARIDE BINDING MODES IN HUMAN LYSOZYME CO-CRYSTALLIZED WITH HEXA-N-ACETYL-CHITOHEXAOSE AT PH 4.0
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, HUMAN LYSOZYME
Authors:Matsushima, M, Inaka, K.
Deposit date:1994-09-14
Release date:1995-04-20
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural changes of active site cleft and different saccharide binding modes in human lysozyme co-crystallized with hexa-N-acetyl-chitohexaose at pH 4.0.
J.Mol.Biol., 244, 1994
1LZY
DownloadVisualize
BU of 1lzy by Molmil
X-RAY STRUCTURE OF TURKEY EGG LYSOZYME COMPLEX WITH DI-N-ACETYLCHITOBIOSE. RECOGNITION AND BINDING OF ALPHA-ANOMERIC FORM
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, TURKEY EGG WHITE LYSOZYME
Authors:Harata, K.
Deposit date:1995-01-09
Release date:1995-02-27
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:X-ray structure of monoclinic turkey egg lysozyme at 1.3 A resolution.
Acta Crystallogr.,Sect.D, 49, 1993
8IDI
DownloadVisualize
BU of 8idi by Molmil
Crystal structure of nanobody VHH-T71 with MERS-CoV RBD
Descriptor: Spike protein S1, VHH-T71, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Wang, X, Tian, L.
Deposit date:2023-02-13
Release date:2024-02-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural Definition of a Novel Nanobody Binding Site specifically targeting the MERS-CoV RBD Core-Domain with Neutralizing Capacity
To Be Published
1MFD
DownloadVisualize
BU of 1mfd by Molmil
THE SOLUTION STRUCTURE OF A TRISACCHARIDE-ANTIBODY COMPLEX: COMPARISON OF NMR MEASUREMENTS WITH A CRYSTAL STRUCTURE
Descriptor: IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN), IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN), alpha-D-galactopyranose-(1-2)-[alpha-D-Abequopyranose-(1-3)]methyl alpha-D-mannopyranoside
Authors:Zdanov, A, Cygler, M.
Deposit date:1993-10-25
Release date:1994-01-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Solution structure of a trisaccharide-antibody complex: comparison of NMR measurements with a crystal structure.
Biochemistry, 33, 1994
1MFV
DownloadVisualize
BU of 1mfv by Molmil
Probing the role of a mobile loop in human slaivary amylase: Structural studies on the loop-deleted enzyme
Descriptor: 4-amino-4,6-dideoxy-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4-amino-4,6-dideoxy-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, 5-HYDROXYMETHYL-CHONDURITOL, ...
Authors:Ramasubbu, N, Ragunath, C, Mishra, P.J.
Deposit date:2002-08-13
Release date:2002-11-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase.
J.Mol.Biol., 325, 2003
9G6E
DownloadVisualize
BU of 9g6e by Molmil
CLC7(Y715C)/OSTM1 complex
Descriptor: CHLORIDE ION, CHOLESTEROL HEMISUCCINATE, H(+)/Cl(-) exchange transporter 7, ...
Authors:Lin, Y, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2024-07-18
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Mechanism of phosphoinositide regulation of lysosomal pH via inhibition of CLC7
To Be Published
1MFE
DownloadVisualize
BU of 1mfe by Molmil
RECOGNITION OF A CELL-SURFACE OLIGO-SACCHARIDE OF PATHOGENIC SALMONELLA BY AN ANTIBODY FAB FRAGMENT
Descriptor: IGG1-LAMBDA SE155-4 FAB (HEAVY CHAIN), IGG1-LAMBDA SE155-4 FAB (LIGHT CHAIN), alpha-D-galactopyranose-(1-2)-[alpha-D-Abequopyranose-(1-3)]alpha-D-mannopyranose
Authors:Cygler, M.
Deposit date:1993-10-25
Release date:1994-01-31
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recognition of a cell-surface oligosaccharide of pathogenic Salmonella by an antibody Fab fragment.
Science, 253, 1991
9G6D
DownloadVisualize
BU of 9g6d by Molmil
CLC7/OSTM1 complex in the absence of PIP2 lipid.
Descriptor: CHLORIDE ION, CHOLESTEROL HEMISUCCINATE, H(+)/Cl(-) exchange transporter 7, ...
Authors:Lin, Y, Deme, J.C, Lea, S.M, Newstead, S.
Deposit date:2024-07-18
Release date:2025-07-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Mechanism of phosphoinositide regulation of lysosomal pH via inhibition of CLC7
To Be Published

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon