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3MYR
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BU of 3myr by Molmil
Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, Hydrogenase (NiFe) small subunit HydA, ...
Authors:Ogata, H, Kellers, P, Lubitz, W.
Deposit date:2010-05-11
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state).
J.Mol.Biol., 402, 2010
1E3D
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BU of 1e3d by Molmil
[NiFe] Hydrogenase from Desulfovibrio desulfuricans ATCC 27774
Descriptor: (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), FE3-S4 CLUSTER, ...
Authors:Matias, P.M, Soares, C.M, Saraiva, L.M, Coelho, R, Morais, J, Le Gall, J, Carrondo, M.A.
Deposit date:2000-06-14
Release date:2001-06-14
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:[Nife] Hydrogenase from Desulfovibrio Desulfuricans Atcc 27774: Gene Sequencing, Three-Dimensional Structure Determination and Refinement at 1.8 A and Modelling Studies of its Interaction with the Tetrahaem Cytochrome C3.
J.Biol.Inorg.Chem., 6, 2001
2FRV
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BU of 2frv by Molmil
CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Volbeda, A, Frey, M, Fontecilla-Camps, J.C.
Deposit date:1997-06-10
Release date:1998-06-17
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of the [Nife] Hydrogenase Active Site: Evidence for Biologically Uncommon Fe Ligands
J.Am.Chem.Soc., 118, 1996
2FUG
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BU of 2fug by Molmil
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, IRON/SULFUR CLUSTER, ...
Authors:Sazanov, L.A, Hinchliffe, P.
Deposit date:2006-01-26
Release date:2006-02-14
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.
Science, 311, 2006
5ADU
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BU of 5adu by Molmil
The Mechanism of Hydrogen Activation by NiFe-hydrogenases
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Evans, R, Brooke, E.J, Wehlin, S.A, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A.
Deposit date:2015-08-24
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Mechanism of hydrogen activation by [NiFe] hydrogenases.
Nat. Chem. Biol., 12, 2016
3I9V
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BU of 3i9v by Molmil
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 2 mol/ASU
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Sazanov, L.A, Berrisford, J.M.
Deposit date:2009-07-13
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the mechanism of respiratory complex I
J.Biol.Chem., 284, 2009
5AA5
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BU of 5aa5 by Molmil
Actinobacterial-type NiFe-hydrogenase from Ralstonia eutropha H16 at 2.85 Angstrom resolution
Descriptor: IRON/SULFUR CLUSTER, MALONIC ACID, NIFE-HYDROGENASE LARGE SUBUNIT, ...
Authors:Schaefer, C, Bommer, M, Hennig, S, Jeoung, J.H, Dobbek, H, Lenz, O.
Deposit date:2015-07-23
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Structure of an Actinobacterial-Type [Nife]-Hydrogenase Reveals Insight Into O2-Tolerant H2 Oxidation.
Structure, 24, 2016
5A4F
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BU of 5a4f by Molmil
The mechanism of Hydrogen Activation by NiFe-hydrogenases.
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ...
Authors:Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A.
Deposit date:2015-06-09
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Mechanism of hydrogen activation by [NiFe] hydrogenases.
Nat. Chem. Biol., 12, 2016
3IAS
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BU of 3ias by Molmil
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 4 mol/ASU, re-refined to 3.15 angstrom resolution
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN MONONUCLEOTIDE, ...
Authors:Sazanov, L.A, Berrisford, J.M.
Deposit date:2009-07-14
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Structural basis for the mechanism of respiratory complex I
J.Biol.Chem., 284, 2009
8CA5
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BU of 8ca5 by Molmil
Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 3).
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Yin, Z, Bridges, H.R, Agip, A.N.A, Hirst, J.
Deposit date:2023-01-24
Release date:2023-12-20
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse.
Embo J., 43, 2024
8C2S
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BU of 8c2s by Molmil
Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 1).
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Yin, Z, Bridges, H.R, Agip, A.N.A, Hirst, J.
Deposit date:2022-12-22
Release date:2023-12-20
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse.
Embo J., 43, 2024
8CA3
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BU of 8ca3 by Molmil
Cryo-EM structure NDUFS4 knockout complex I from Mus musculus heart (Class 2).
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Acyl carrier protein, ...
Authors:Yin, Z, Bridges, H.R, Agip, A.N.A, Hirst, J.
Deposit date:2023-01-24
Release date:2023-12-20
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into respiratory complex I deficiency and assembly from the mitochondrial disease-related ndufs4 -/- mouse.
Embo J., 43, 2024
5A4I
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BU of 5a4i by Molmil
The mechanism of Hydrogen activation by NiFE-hydrogenases
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.C, Phillips, S.E.V, Armstrong, F.A.
Deposit date:2015-06-10
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Mechanism of hydrogen activation by [NiFe] hydrogenases.
Nat. Chem. Biol., 12, 2016
3IAM
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BU of 3iam by Molmil
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, reduced, 2 mol/ASU, with bound NADH
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Sazanov, L.A, Berrisford, J.M.
Deposit date:2009-07-14
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for the mechanism of respiratory complex I
J.Biol.Chem., 284, 2009
4CI0
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BU of 4ci0 by Molmil
Electron cryo-microscopy of F420-reducing NiFe hydrogenase Frh
Descriptor: F420-REDUCING HYDROGENASE, SUBUNIT ALPHA, SUBUNIT BETA, ...
Authors:Allegretti, M, Mills, D.J, McMullan, G, Kuehlbrandt, W, Vonck, J.
Deposit date:2013-12-05
Release date:2014-02-26
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Atomic Model of the F420-Reducing [Nife] Hydrogenase by Electron Cryo-Electron Microscopy Using a Direct Electron Detector.
Elife, 3, 2014
6NBQ
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BU of 6nbq by Molmil
T.elongatus NDH (data-set 1)
Descriptor: IRON/SULFUR CLUSTER, NAD(P)H-quinone oxidoreductase chain 4 1, NAD(P)H-quinone oxidoreductase subunit 2, ...
Authors:Laughlin, T.G, Bayne, A, Trempe, J.-F, Savage, D.F, Davies, K.M.
Deposit date:2018-12-09
Release date:2019-02-27
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the complex I-like molecule NDH of oxygenic photosynthesis.
Nature, 566, 2019
6NBX
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BU of 6nbx by Molmil
T.elongatus NDH (data-set 2)
Descriptor: IRON/SULFUR CLUSTER, NAD(P)H-quinone oxidoreductase chain 4 1, NAD(P)H-quinone oxidoreductase subunit 1, ...
Authors:Laughlin, T.G, Bayne, A, Trempe, J.-F, Savage, D.F, Davies, K.M.
Deposit date:2018-12-10
Release date:2019-02-27
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of the complex I-like molecule NDH of oxygenic photosynthesis.
Nature, 566, 2019
6NBY
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BU of 6nby by Molmil
T.elongatus NDH (composite model)
Descriptor: IRON/SULFUR CLUSTER, NAD(P)H-quinone oxidoreductase chain 4 1, NAD(P)H-quinone oxidoreductase subunit 1, ...
Authors:Laughlin, T.G, Bayne, A, Trempe, J.-F, Savage, D.F, Davies, K.M.
Deposit date:2018-12-10
Release date:2019-02-27
Last modified:2020-04-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of the complex I-like molecule NDH of oxygenic photosynthesis.
Nature, 566, 2019
5D51
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BU of 5d51 by Molmil
Krypton derivatization of an O2-tolerant membrane-bound [NiFe] hydrogenase reveals a hydrophobic gas tunnel network
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
Authors:Kalms, J, Schmidt, A, Frielingsdorf, S, van der Linden, P, von Stetten, D, Lenz, O, Carpentier, P, Scheerer, P.
Deposit date:2015-08-10
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Krypton Derivatization of an O2 -Tolerant Membrane-Bound [NiFe] Hydrogenase Reveals a Hydrophobic Tunnel Network for Gas Transport.
Angew.Chem.Int.Ed.Engl., 55, 2016
4C3O
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BU of 4c3o by Molmil
Structure and function of an oxygen tolerant NiFe hydrogenase from Salmonella
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
Authors:Bowman, L, Flanagan, L, Fyfe, P.K, Parkin, A, Hunter, W.N, Sargent, F.
Deposit date:2013-08-26
Release date:2014-01-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:How the Structure of the Large Subunit Controls Function in an Oxygen-Tolerant [Nife]-Hydrogenase.
Biochem.J., 458, 2014
5A4M
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BU of 5a4m by Molmil
Mechanism of Hydrogen activation by NiFe-hydrogenases
Descriptor: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ...
Authors:Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sergent, F, Carr, S.B, Philips, S.E.V, Armstrong, F.A.
Deposit date:2015-06-10
Release date:2015-11-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanism of Hydrogen Activation by [Nife] Hydrogenases.
Nat.Chem.Biol., 12, 2016
4GD3
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BU of 4gd3 by Molmil
Structure of E. coli hydrogenase-1 in complex with cytochrome b
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Volbeda, A, Fontecilla-Camps, J.C, Darnault, C.
Deposit date:2012-07-31
Release date:2013-01-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of the O(2)-Tolerant Membrane-Bound Hydrogenase 1 from Escherichia coli in Complex with Its Cognate Cytochrome b.
Structure, 21, 2013
2YBB
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BU of 2ybb by Molmil
Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, CALCIUM ION, CARDIOLIPIN, ...
Authors:Althoff, T, Mills, D.J, Popot, J.-L, Kuehlbrandt, W.
Deposit date:2011-03-02
Release date:2011-10-19
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (19 Å)
Cite:Arrangement of Electron Transport Chain Components in Bovine Mitochondrial Supercomplex I(1)III(2)Iv(1).
Embo J., 30, 2011
1FRF
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BU of 1frf by Molmil
CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS
Descriptor: FE (III) ION, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
Authors:Montet, Y, Volbeda, A, Piras, C, Hatchikian, E.C, Frey, M, Fontecilla, J.C.
Deposit date:1998-07-21
Release date:1998-07-29
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis
Proc.Natl.Acad.Sci.USA, 95, 1998
1FRV
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BU of 1frv by Molmil
CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE
Descriptor: FE3-S4 CLUSTER, HYDRATED FE, HYDROGENASE, ...
Authors:Volbeda, A, Frey, M, Fontecilla-Camps, J.C.
Deposit date:1996-03-28
Release date:1996-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas.
Nature, 373, 1995

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