2LX1
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7EDU
| RNA duplex containing C-Au-C base pair | Descriptor: | GOLD ION, RNA (5'-R(*GP*GP*AP*CP*UP*CP*GP*AP*CP*UP*CP*C)-3') | Authors: | Kondo, J, Iwase, E. | Deposit date: | 2021-03-17 | Release date: | 2022-03-23 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | RNA duplex containing C-Au-C base pair To Be Published
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7ECK
| RNA duplex containing C-Ag-A and U-Ag-A base pairs | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION | Authors: | Kondo, J, Uchida, Y. | Deposit date: | 2021-03-12 | Release date: | 2022-03-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | RNA duplex containing C-Ag-A and U-Ag-A base pairs To Be Published
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7ECJ
| RNA duplex containing C-A base pairs | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | Authors: | Kondo, J, Uchida, Y. | Deposit date: | 2021-03-12 | Release date: | 2022-03-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | RNA duplex containing C-A base pairs To Be Published
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7ECM
| RNA duplex containing C-A base pair | Descriptor: | BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3') | Authors: | Kondo, J, Tsudura, A. | Deposit date: | 2021-03-12 | Release date: | 2022-03-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.51 Å) | Cite: | RNA duplex containing C-A base pair To Be Published
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7ECL
| RNA duplex containing C-Ag-A and U-Ag-A base pair | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION | Authors: | Kondo, J, Uchida, Y. | Deposit date: | 2021-03-12 | Release date: | 2022-03-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (3.01 Å) | Cite: | RNA duplex containing C-Ag-A and U-Ag-A base pair To Be Published
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7EEM
| RNA bulged-G motif | Descriptor: | IRIDIUM ION, RNA (27-MER) | Authors: | Kondo, J, Sekiguchi, S. | Deposit date: | 2021-03-19 | Release date: | 2022-03-23 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.593 Å) | Cite: | RNA bulged-G motif To Be Published
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7EI7
| RNA kink-turn motif with 2-aminopurine | Descriptor: | COBALT (II) ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | Authors: | Kondo, J, Saisu, S. | Deposit date: | 2021-03-30 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | RNA kink-turn motif with 2-aminopurine To Be Published
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7EI8
| RNA kink-turn motif with 2-aminopurine | Descriptor: | COBALT (II) ION, RNA (5'-R(*GP*GP*C)-D(P*(2PR)P*(2PR)P*(2PR)P*(2PR))-R(P*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | Authors: | Kondo, J, Saisu, S. | Deposit date: | 2021-03-30 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | RNA kink-turn motif with 2-aminopurine To Be Published
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7EIA
| RNA kink-turn motif with pyrrolo cytosine | Descriptor: | POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | Authors: | Kondo, J, Miyauchi, T. | Deposit date: | 2021-03-30 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | RNA kink-turn motif with pyrrolo cytosine To Be Published
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2O9T
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2O9R
| beta-glucosidase B complexed with thiocellobiose | Descriptor: | Beta-glucosidase B, beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose | Authors: | Isorna, P, Polaina, J, Sanz-Aparicio, J. | Deposit date: | 2006-12-14 | Release date: | 2007-10-02 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structures of Paenibacillus polymyxa beta-Glucosidase B Complexes Reveal the Molecular Basis of Substrate Specificity and Give New Insights into the Catalytic Machinery of Family I Glycosidases J.Mol.Biol., 371, 2007
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7F8Z
| RNA kink-turn motif with 2-aminopurine | Descriptor: | POTASSIUM ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | Authors: | Kondo, J, Miyauchi, T. | Deposit date: | 2021-07-03 | Release date: | 2022-07-06 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | RNA kink-turn motif with 2-aminopurine To Be Published
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1KAJ
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1WOY
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2RN1
| Liquid crystal solution structure of the kissing complex formed by the apical loop of the HIV TAR RNA and a high affinity RNA aptamer optimized by SELEX | Descriptor: | RNA (5'-R(P*GP*AP*GP*CP*CP*CP*UP*GP*GP*GP*AP*GP*GP*CP*UP*C)-3'), RNA (5'-R(P*GP*CP*UP*GP*GP*UP*CP*CP*CP*AP*GP*AP*CP*AP*GP*C)-3') | Authors: | Van Melckebeke, H, Devany, M, Di Primo, C, Beaurain, F, Toulme, J, Bryce, D.L, Boisbouvier, J. | Deposit date: | 2007-12-05 | Release date: | 2008-09-23 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex Proc.Natl.Acad.Sci.Usa, 105, 2008
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4WKG
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2NQZ
| Trna-guanine transglycosylase (TGT) mutant in complex with 7-deaza-7-aminomethyl-guanine | Descriptor: | 7-DEAZA-7-AMINOMETHYL-GUANINE, GLYCEROL, Queuine tRNA-ribosyltransferase, ... | Authors: | Tidten, N, Heine, A, Reuter, K, Klebe, G. | Deposit date: | 2006-11-01 | Release date: | 2007-11-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.46 Å) | Cite: | Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor Plos One, 8, 2013
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2NSO
| Trna-gunanine-transglycosylase (TGT) mutant Y106F, C158V, A232S, V233G- APO-Structure | Descriptor: | GLYCEROL, Queuine tRNA-ribosyltransferase, ZINC ION | Authors: | Tidten, N, Heine, A, Reuter, K, Klebe, G. | Deposit date: | 2006-11-06 | Release date: | 2007-12-04 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Investigation of Specificity Determinants in Bacterial tRNA-Guanine Transglycosylase Reveals Queuine, the Substrate of Its Eucaryotic Counterpart, as Inhibitor. Plos One, 8, 2013
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1RNG
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1RHT
| 24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE) | Descriptor: | RNA (5'-R(P*GP*GP*GP*AP*CP*UP*GP*AP*CP*GP*AP*UP*CP*AP*CP*GP*CP*AP*GP*UP*CP*UP*AP*U)-3') | Authors: | Borer, P.N, Lin, Y, Wang, S, Roggenbuck, M.W, Gott, J.M, Uhlenbeck, O.C, Pelczer, I. | Deposit date: | 1995-03-03 | Release date: | 1995-06-03 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Proton NMR and structural features of a 24-nucleotide RNA hairpin. Biochemistry, 34, 1995
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2M8K
| A pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo | Descriptor: | RNA (48-MER) | Authors: | Cash, D.D, Cohen, O, Kim, N, Shefer, K, Brown, Y, Ulyanov, N.B, Tzfati, Y, Feigon, J. | Deposit date: | 2013-05-22 | Release date: | 2013-06-19 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo. Proc.Natl.Acad.Sci.USA, 110, 2013
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4YU7
| Crystal structure of Piratoxin I (PrTX-I) complexed to caffeic acid | Descriptor: | 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, Basic phospholipase A2 homolog piratoxin-1, CAFFEIC ACID, ... | Authors: | Fernandes, C.A.H, Fontes, M.R.M. | Deposit date: | 2015-03-18 | Release date: | 2015-08-05 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (1.647 Å) | Cite: | Structural Basis for the Inhibition of a Phospholipase A2-Like Toxin by Caffeic and Aristolochic Acids. Plos One, 10, 2015
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1RAU
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2OOM
| NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA/RNA aptamer | Descriptor: | RNA 16-mer, TAR RNA element of HIV-1 | Authors: | Lebars, I, Richard, T, Di Primo, C, Toulme, J.J. | Deposit date: | 2007-01-26 | Release date: | 2008-01-29 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer Nucleic Acids Res., 35, 2007
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