PDB: 5653 resultsInfo pagesStatus searchChemie searchBIRD

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2WV8	Complex of human dihydroorotate dehydrogenase with the inhibitor 221290 Descriptor: 2-ACETAMIDO-5-(4-PHENYLPHENYL)BENZOIC ACID, ACETATE ION, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, ... Authors: Walse, B, Svensson, B, Fritzson, I, Dahlberg, L, Wellmar, U, Al-Karadaghi, S. Deposit date: 2009-10-15 Release date: 2010-08-25 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Inhibition of Human Dhodh by 4-Hydroxycoumarins, Fenamic Acids, and N-(Alkylcarbonyl)Anthranilic Acids Identified by Structure-Guided Fragment Selection. Chemmedchem, 5, 2010
8JYT	Ancestral imine reducatase N560 Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ancestra imine reductase Authors: Zhu, X.X. Deposit date: 2023-07-03 Release date: 2023-10-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.79 Å) Cite: The structure of ancestral imine reductase N560. To Be Published
5FPO	Structure of Bacterial DNA Ligase with small-molecule ligand 1H- indazol-7-amine (AT4213) in an alternate binding site. Descriptor: 1H-indazol-7-amine, DNA LIGASE Authors: Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. Deposit date: 2015-12-02 Release date: 2015-12-23 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
1ICO	SOLUTION STRUCTURE OF DESIGNED BETA-SHEET MINI-PROTEIN TH10BOX Descriptor: TH10BOX Authors: Ottesen, J.J, Imperiali, B. Deposit date: 2001-04-02 Release date: 2001-04-11 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Design of a discretely folded mini-protein motif with predominantly beta-structure. Nat.Struct.Biol., 8, 2001
1YOD	Crystal structure of a water soluble analog of phospholamban Descriptor: water-solublized phospholamban Authors: Slovic, A.M, Stayrook, S.E, North, B, DeGrado, W.F. Deposit date: 2005-01-27 Release date: 2005-04-19 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils. J.Mol.Biol., 348, 2005
1YT6	NMR structure of peptide SD Descriptor: peptide SD Authors: Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I. Deposit date: 2005-02-10 Release date: 2005-09-27 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand. Febs J., 272, 2005
5FPR	Structure of Bacterial DNA Ligase with small-molecule ligand pyrimidin-2-amine (AT371) in an alternate binding site. Descriptor: DNA LIGASE, PYRIMIDIN-2-AMINE, SULFATE ION Authors: Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. Deposit date: 2015-12-02 Release date: 2015-12-16 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
6Z0C	Structure of in silico modelled artificial Maquette-3 protein Descriptor: Maquette-3, POTASSIUM ION Authors: Baumgart, M, Roepke, M, Muehlbauer, M.E, Asami, S, Mader, S.L, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I. Deposit date: 2020-05-08 Release date: 2021-03-17 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Design of buried charged networks in artificial proteins Nat Commun, 12, 2021
5MFD	Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5 Descriptor: CALCIUM ION, Capsid decoration protein,pD_(KR)5, YIIIM''6AII Authors: Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A. Deposit date: 2016-11-18 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of designed armadillo repeat proteins binding to peptides fused to globular domains. Protein Sci., 26, 2017
6NHT	Single particle reconstruction of the symmetric core an engineered protein scaffold Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B Authors: Liu, Y, Huynh, D, Yeates, T.O. Deposit date: 2018-12-23 Release date: 2019-05-08 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
5LEM	Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_11_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein Descriptor: DD_Off7_11_3G124, Green fluorescent protein, Maltose-binding periplasmic protein Authors: Batyuk, A, Wu, Y, Mittl, P.R, Plueckthun, A. Deposit date: 2016-06-30 Release date: 2017-08-02 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (2.98 Å) Cite: Rigidly connected multispecific artificial binders with adjustable geometries. Sci Rep, 7, 2017
7OGP	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase - class including clamp Descriptor: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... Authors: de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. Deposit date: 2021-05-07 Release date: 2021-07-07 Last modified: 2023-11-22 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
7OGR	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase Descriptor: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... Authors: de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. Deposit date: 2021-05-07 Release date: 2021-07-07 Last modified: 2023-11-22 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
6NHV	Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold Descriptor: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP Authors: Liu, Y, Huynh, D, Yeates, T.O. Deposit date: 2018-12-24 Release date: 2019-05-08 Last modified: 2019-11-27 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
1XOF	Heterooligomeric Beta Beta Alpha Miniprotein Descriptor: BBAhetT1 Authors: Ali, M.H, Taylor, C.M, Grigoryan, G, Allen, K.N, Imperiali, B, Keating, A.E. Deposit date: 2004-10-06 Release date: 2005-02-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Design of a Heterospecific, Tetrameric, 21-Residue Miniprotein with Mixed alpha/beta Structure. Structure, 13, 2005
5MFE	Designed armadillo repeat protein YIIIM5AII in complex with (RR)4 peptide Descriptor: (RR)4, 1,2-ETHANEDIOL, CALCIUM ION, ... Authors: Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. Deposit date: 2016-11-18 Release date: 2017-09-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
5MFM	Designed armadillo repeat protein peptide fusion YIIIM6AII_GS11_(KR)5 Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Importin subunit alpha, ... Authors: Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. Deposit date: 2016-11-18 Release date: 2017-09-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
1LB7	IGF-F1-1, A PEPTIDE ANTAGONIST OF IGF-1 Descriptor: IGF-1 ANTAGONIST F1-1 Authors: Deshayes, K, Schaffer, M.L, Skelton, N.J, Nakamura, G.R, Kadkhodayan, S, Sidhu, S.S. Deposit date: 2002-04-02 Release date: 2002-06-19 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Rapid identification of small binding motifs with high-throughput phage display: discovery of peptidic antagonists of IGF-1 function. Chem.Biol., 9, 2002
5MFG	Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)4 Descriptor: (RR)4, CALCIUM ION, YIIIM5AII Authors: Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. Deposit date: 2016-11-18 Release date: 2017-09-13 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.901 Å) Cite: Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
8OT7	Crystal structure of an 8-repeat consensus TPR superhelix with Barium Descriptor: BARIUM ION, Consensus tetratricopeptide repeat protein Authors: Liutkus, M, Rojas, A.L, Cortajarena, A.L. Deposit date: 2023-04-20 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
1Y47	Structural studies of designed alpha-helical hairpins Descriptor: CADMIUM ION, dueferri (DF2) Authors: Lahr, S.J, Engel, D.E, Stayrook, S.E, Maglio, O, North, B, Geremia, S, Lombardi, A, DeGrado, W.F. Deposit date: 2004-11-30 Release date: 2005-03-22 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Analysis and design of turns in alpha-helical hairpins J.Mol.Biol., 346, 2005
5ORQ	Crystal structure of designed cPPR-Telo1 in complex with ssDNA Descriptor: DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), cPPR-Telo1 Authors: Spahr, H, Rackham, O. Deposit date: 2017-08-16 Release date: 2018-06-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins. Nat Commun, 9, 2018
2AF5	2.5A X-ray Structure of Engineered OspA protein Descriptor: Engineered Outer Surface Protein A (OspA) with the inserted two beta-hairpins Authors: Makabe, K, Mcelheny, D, Tereshko, V, Hilyard, A, Koide, A, Koide, S. Deposit date: 2005-07-25 Release date: 2006-08-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Atomic structures of peptide self-assembly mimics. Proc.Natl.Acad.Sci.Usa, 103, 2006
1YYJ	The NMR solution structure of a redesigned apocytochrome b562:Rd-apocyt b562 Descriptor: redesigned apocytochrome B562 Authors: Feng, H, Takei, J, Lipsitz, R, Tjandra, N, Bai, Y, Berkeley Structural Genomics Center (BSGC) Deposit date: 2005-02-25 Release date: 2005-08-25 Last modified: 2023-09-27 Method: SOLUTION NMR Cite: Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding Biochemistry, 42, 2003
1YWT	Crystal structure of the human sigma isoform of 14-3-3 in complex with a mode-1 phosphopeptide Descriptor: 14-3-3 protein sigma, CALCIUM ION, synthetic optimal phosphopeptide (mode-1) Authors: Wilker, E.W, Grant, R.A, Artim, S.C, Yaffe, M.B. Deposit date: 2005-02-18 Release date: 2005-03-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.4 Å) Cite: A structural basis for 14-3-3sigma functional specificity. J.Biol.Chem., 280, 2005

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