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8FFY
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Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(UGA-TL)
Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, Serine--tRNA ligase, mitochondrial, ...
Authors:Hirschi, M, Kuhle, B, Doerfel, L, Schimmel, P, Lander, G.
Deposit date:2022-12-11
Release date:2023-08-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for a degenerate tRNA identity code and the evolution of bimodal specificity in human mitochondrial tRNA recognition.
Nat Commun, 14, 2023
6NRE
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BU of 6nre by Molmil
Monomeric Lipocalin Can F 6
Descriptor: Lipocalin-Can f 6 allergen
Authors:Clayton G, M, Kappler J, W, Chan, S.
Deposit date:2019-01-23
Release date:2019-09-25
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural characteristics of lipocalin allergens: Crystal structure of the immunogenic dog allergen Can f 6.
Plos One, 14, 2019
8FJP
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BU of 8fjp by Molmil
Cryo-EM structure of native mosquito salivary gland surface protein 1 (SGS1)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, salivary gland surface protein 1
Authors:Liu, S, Xia, X, Calvo, E, Zhou, Z.H.
Deposit date:2022-12-20
Release date:2023-03-01
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Native structure of mosquito salivary protein uncovers domains relevant to pathogen transmission.
Nat Commun, 14, 2023
8FNE
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BU of 8fne by Molmil
phiPA3 PhuN Tetramer, p2
Descriptor: Maltose/maltodextrin-binding periplasmic protein, PhuN
Authors:Nieweglowska, E.S, Brilot, A.F, Mendez-Moran, M, Kokontis, C, Baek, M, Li, J, Cheng, Y, Baker, D, Bondy-Denomy, J, Agard, D.A.
Deposit date:2022-12-27
Release date:2023-03-01
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:The phi PA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice.
Nat Commun, 14, 2023
4ODM
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BU of 4odm by Molmil
Structure of SlyD from Thermus thermophilus in complex with S2-W23A peptide
Descriptor: 30S ribosomal protein S2, ACETATE ION, CHLORIDE ION, ...
Authors:Quistgaard, E.M, Low, C, Nordlund, P.
Deposit date:2014-01-10
Release date:2015-01-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.
BMC Biol., 14, 2016
8G18
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Heterodimer of the GluN1b-GluN2B NMDA receptor amino-terminal domains bound to allosteric inhibitor 93-108
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glutamate receptor ionotropic, NMDA 1, ...
Authors:Regan, M.C, Furukawa, H.
Deposit date:2023-02-01
Release date:2023-03-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Novel GluN2B-Selective NMDA Receptor Negative Allosteric Modulator Possesses Intrinsic Analgesic Properties and Enhances Analgesia of Morphine in a Rodent Tail Flick Pain Model.
Acs Chem Neurosci, 14, 2023
8FYR
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BU of 8fyr by Molmil
MicroED structure of Proteinase K from oxygen milled lamellae
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-03-08
Method:ELECTRON CRYSTALLOGRAPHY (1.5 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FYQ
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BU of 8fyq by Molmil
MicroED structure of Proteinase K from argon milled lamellae
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-03-08
Method:ELECTRON CRYSTALLOGRAPHY (1.4 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FYN
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BU of 8fyn by Molmil
MicroED structure of A2A from plasma milled lamellae
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, ...
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-03-08
Last modified:2023-03-22
Method:ELECTRON CRYSTALLOGRAPHY (2 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FD8
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BU of 8fd8 by Molmil
human 15-PGDH with NADH bound
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 15-hydroxyprostaglandin dehydrogenase [NAD(+)]
Authors:Huang, W, Taylor, D.
Deposit date:2022-12-02
Release date:2023-03-08
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Small molecule inhibitors of 15-PGDH exploit a physiologic induced-fit closing system.
Nat Commun, 14, 2023
8FYP
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BU of 8fyp by Molmil
MicroED structure of Proteinase K from xenon milled lamellae
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-03-08
Method:ELECTRON CRYSTALLOGRAPHY (1.45 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FYS
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BU of 8fys by Molmil
MicroED structure of Proteinase K from nitrogen milled lamellae
Descriptor: CALCIUM ION, Proteinase K
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-03-08
Method:ELECTRON CRYSTALLOGRAPHY (1.8 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FJ0
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BU of 8fj0 by Molmil
Crystal Structure of the Tick Evasin EVA-AAM1001(Y44A) Complexed to Human Chemokine CCL2
Descriptor: C-C motif chemokine 2, Evasin P1243
Authors:Devkota, S.R, Bhusal, R.P, Aryal, P, Wilce, M.C.J, Stone, M.J.
Deposit date:2022-12-18
Release date:2023-03-29
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Engineering broad-spectrum inhibitors of inflammatory chemokines from subclass A3 tick evasins.
Nat Commun, 14, 2023
8FFK
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BU of 8ffk by Molmil
Klebsiella pneumoniae AcrB multidrug efflux pump apo form
Descriptor: Efflux pump membrane transporter
Authors:Zhang, Z.
Deposit date:2022-12-08
Release date:2023-04-05
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.82 Å)
Cite:Cryo-EM Structures of the Klebsiella pneumoniae AcrB Multidrug Efflux Pump.
Mbio, 14, 2023
8FDS
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BU of 8fds by Molmil
Ankyrin domain of SKD3 isoform 2
Descriptor: Caseinolytic peptidase B protein homolog, FORMIC ACID
Authors:Lee, S, Tsai, F.T.F, Chang, C.
Deposit date:2022-12-04
Release date:2023-04-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis of impaired disaggregase function in the oxidation-sensitive SKD3 mutant causing 3-methylglutaconic aciduria.
Nat Commun, 14, 2023
8FCK
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BU of 8fck by Molmil
Structure of the vertebrate augmin complex
Descriptor: HAUS augmin like complex subunit 2 L homeolog, Green fluorescent protein chimera, HAUS augmin like complex subunit 4 L homeolog, ...
Authors:Travis, S.M, Huang, W, Zhang, R, Petry, S.
Deposit date:2022-12-01
Release date:2023-04-19
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (6.88 Å)
Cite:Integrated model of the vertebrate augmin complex.
Nat Commun, 14, 2023
8FZR
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BU of 8fzr by Molmil
CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Descriptor: Arg tRNA, Arginyl-tRNA--protein transferase 1, ZINC ION
Authors:Huang, W, Zhang, Y, Taylor, D.J.
Deposit date:2023-01-29
Release date:2023-04-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.
Nat Commun, 14, 2023
8FOJ
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BU of 8foj by Molmil
Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the post RNA handoff state
Descriptor: DNA polymerase, DNA polymerase alpha subunit B, DNA primase, ...
Authors:Yuan, Z, Georgescu, R, Li, H, O'Donnell, M.
Deposit date:2022-12-30
Release date:2023-05-31
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Molecular choreography of primer synthesis by the eukaryotic Pol alpha-primase.
Nat Commun, 14, 2023
8FOH
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BU of 8foh by Molmil
Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase complex in the RNA synthesis state
Descriptor: DNA polymerase, DNA polymerase alpha subunit B, DNA primase, ...
Authors:Yuan, Z, Georgescu, R, Li, H, O'Donnell, M.
Deposit date:2022-12-30
Release date:2023-05-31
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Molecular choreography of primer synthesis by the eukaryotic Pol alpha-primase.
Nat Commun, 14, 2023
8FOC
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BU of 8foc by Molmil
Cryo-EM structure of S. cerevisiae DNA polymerase alpha-primase in Apo state conformation I
Descriptor: DNA polymerase, DNA polymerase alpha subunit B, DNA primase, ...
Authors:Yuan, Z, Georgescu, R, Li, H, O'Donnell, M.
Deposit date:2022-12-30
Release date:2023-05-31
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Molecular choreography of primer synthesis by the eukaryotic Pol alpha-primase.
Nat Commun, 14, 2023
8FOW
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BU of 8fow by Molmil
Ternary complex of CDK2 with small molecule ligands TW8672 and Dinaciclib
Descriptor: 1,2-ETHANEDIOL, 2-{[2-(1H-indol-3-yl)ethyl]amino}-5-nitrobenzoic acid, 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin-1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]-1-hydroxypyridinium, ...
Authors:Schonbrunn, E, Sun, L.
Deposit date:2023-01-03
Release date:2023-05-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Development of allosteric and selective CDK2 inhibitors for contraception with negative cooperativity to cyclin binding.
Nat Commun, 14, 2023
6NSS
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BU of 6nss by Molmil
TRK-A IN COMPLEX WITH LIGAND 6
Descriptor: High affinity nerve growth factor receptor, N-(8-methyl-2-phenylimidazo[1,2-a]pyrazin-3-yl)-2-(10H-phenoxazin-10-yl)acetamide
Authors:Subramanian, G, Brown, D.G.
Deposit date:2019-01-25
Release date:2019-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Deciphering the Allosteric Binding Mechanism of the Human Tropomyosin Receptor Kinase A ( hTrkA) Inhibitors.
Acs Chem.Biol., 14, 2019
8FYO
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BU of 8fyo by Molmil
MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Descriptor: CALCIUM ION, NITRATE ION, Proteinase K
Authors:Martynowycz, M.W, Shiriaeva, A, Clabbers, M.T.B, Nicolas, W.J, Weaver, S.J, Hattne, J, Gonen, T.
Deposit date:2023-01-26
Release date:2023-05-24
Method:ELECTRON CRYSTALLOGRAPHY (1.39 Å)
Cite:A robust approach for MicroED sample preparation of lipidic cubic phase embedded membrane protein crystals.
Nat Commun, 14, 2023
8FOB
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BU of 8fob by Molmil
Cryo-EM structure of human TRPV6 in the open state
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, ...
Authors:Neuberger, A, Yelshanskaya, M.V, Nadezhdin, K.D, Sobolevsky, A.I.
Deposit date:2022-12-30
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structural mechanism of human oncochannel TRPV6 inhibition by the natural phytoestrogen genistein.
Nat Commun, 14, 2023
8FOA
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Cryo-EM structure of human TRPV6 in complex with the natural phytoestrogen genistein
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, CALCIUM ION, CHOLESTEROL HEMISUCCINATE, ...
Authors:Neuberger, A, Yelshanskaya, M.V, Nadezhdin, K.D, Sobolevsky, A.I.
Deposit date:2022-12-30
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:Structural mechanism of human oncochannel TRPV6 inhibition by the natural phytoestrogen genistein.
Nat Commun, 14, 2023

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PDB entries from 2024-08-07

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