PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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2I9O	Design of bivalent miniprotein consisting of two independent elements, a b-hairpin peptide and a-helix peptide, tethered by eight glycines Descriptor: MHB8A peptide Authors: Pantoja-Uceda, D, Pineda-Lucena, A. Deposit date: 2006-09-06 Release date: 2007-09-18 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Design of minimal independt protein motifs able to fold autonomously To be Published
6IEI	Loop deletion and proline insertion mutant (deleting six residues and inserted five proline residues) Descriptor: Outer surface protein A Authors: Shiga, S, Makabe, K. Deposit date: 2018-09-14 Release date: 2019-07-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Domain-Swapping Design by Polyproline Rod Insertion. Chembiochem, 20, 2019
6IMH	Solution Structure of Bicyclic Peptide pb-18 Descriptor: (ACE)-GLY-CYS-PRO-CYS-GLU-PRO-SER-TYR-LEU-CYS-PRO-TRP-LEU-PRO-GLY-CYS-(NH2) Authors: Yao, H, Lin, P, Zha, J, Zha, M, Zhao, Y, Wu, C. Deposit date: 2018-10-22 Release date: 2019-08-28 Method: SOLUTION NMR Cite: Ordered and Isomerically Stable Bicyclic Peptide Scaffolds Constrained through Cystine Bridges and Proline Turns. Chembiochem, 20, 2019
6ICS	Loop deletion mutant (deleting four residues) Descriptor: Outer surface protein A Authors: Shiga, S, Makabe, K. Deposit date: 2018-09-06 Release date: 2019-07-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Domain-Swapping Design by Polyproline Rod Insertion. Chembiochem, 20, 2019
6IDC	Loop deletion and proline insertion mutant (deleting six residues and inserted six proline residues) Descriptor: Outer surface protein A Authors: Shiga, S, Makabe, K. Deposit date: 2018-09-09 Release date: 2019-07-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.007 Å) Cite: Domain-Swapping Design by Polyproline Rod Insertion. Chembiochem, 20, 2019
8VC8	Crystal structure of heme-loaded design: HEM_3.C9 Descriptor: HEM_3.C9, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION Authors: Kalvet, I, Bera, A.K, Baker, D. Deposit date: 2023-12-13 Release date: 2024-03-20 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science, 384, 2024
8V2D	Computational Designed Nanocage O43_129 Descriptor: O43_129 component A, O43_129 component B Authors: Weidle, C, Kibler, R.D. Deposit date: 2023-11-22 Release date: 2024-03-13 Last modified: 2024-04-10 Method: ELECTRON MICROSCOPY (6.77 Å) Cite: Blueprinting extendable nanomaterials with standardized protein blocks. Nature, 627, 2024
5V63	Crystal structure of macrocycles containing Abeta 16-22 (KLV(PHI)FAE) and Abeta 30-36 (AII(SAR)L(ORN)V) Descriptor: ORN-LYS-LEU-VAL-PHI-PHE-ALA-GLU-ORN-ALA-ILE-ILE-SAR-LEU-MET-VAL Authors: Spencer, R.K, Salveson, P.J, Nowick, J.S. Deposit date: 2017-03-15 Release date: 2017-06-28 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (2.091 Å) Cite: X-ray Crystallographic Structure of a Compact Dodecamer from a Peptide Derived from A beta 16-36. Org. Lett., 19, 2017
5VBT	Crystal structure of a highly specific and potent USP7 ubiquitin variant inhibitor Descriptor: UBH04 Authors: DONG, A, DONG, X, LIU, L, GUO, Y, LI, Y, ZHANG, W, WALKER, J.R, SIDHU, S, Bountra, C, Arrowsmith, C.H, Edwards, A.M, TONG, Y, Structural Genomics Consortium (SGC) Deposit date: 2017-03-30 Release date: 2017-06-07 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Crystal structure of a highly specific and potent USP7 ubiquitin variant inhibitor to be published
4IJB	Crystal Structure of Engineered Protein, Northeast Structural Genomics Consortium Target OR288 Descriptor: Engineered Protein OR288 Authors: Vorobiev, S, Su, M, Bick, M.J, Seetharaman, J, Khare, S, Maglaqui, M, Xiao, R, Lee, D, Day, A, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Hunt, J, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2012-12-21 Release date: 2013-01-16 Last modified: 2013-02-27 Method: X-RAY DIFFRACTION (1.739 Å) Cite: Crystal Structure of Engineered Protein OR288. To be Published
4V3Q	Designed armadillo repeat protein with 4 internal repeats, 2nd generation C-cap and 3rd generation N-cap. Descriptor: CALCIUM ION, GLYCEROL, YIII_M4_AII Authors: Reichen, C, Madhurantakam, C, Pluckthun, A, Mittl, P. Deposit date: 2014-10-20 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structures of designed armadillo-repeat proteins show propagation of inter-repeat interface effects. Acta Crystallogr D Struct Biol, 72, 2016
4R6G	Crystal structure of computational designed leucine rich repeats DLRR_K in space group P22121 Descriptor: CALCIUM ION, leucine rich repeats DLRR_K Authors: Shen, B.W, Stoddard, B.L. Deposit date: 2014-08-25 Release date: 2015-01-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
4W5P	Prp peptide Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PrP peptide Authors: Yu, L, Lee, S.-J, Yee, V. Deposit date: 2014-08-18 Release date: 2015-05-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.151 Å) Cite: Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations. Biochemistry, 54, 2015
4W71	Crystal structure of a prion peptide Descriptor: PrP peptide Authors: Yu, L, Lee, S.-J, Yee, V. Deposit date: 2014-08-21 Release date: 2015-05-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1 Å) Cite: Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations. Biochemistry, 54, 2015
4W67	Crystal structure of Prp peptide Descriptor: PrP peptide Authors: Yu, L, Lee, S.-J, Yee, V. Deposit date: 2014-08-20 Release date: 2015-05-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.001 Å) Cite: Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations. Biochemistry, 54, 2015
4R5D	Crystal structure of computational designed leucine rich repeats DLRR_G3 in space group F222 Descriptor: 1,2-ETHANEDIOL, Leucine rich repeat protein, SULFATE ION Authors: Shen, B.W, Stoddard, B.L. Deposit date: 2014-08-21 Release date: 2015-01-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
4R58	Crystal structure of computational designed leucine rich repeats DLRR_A in space group P21 Descriptor: Leucine Rich Repeat protein Authors: Shen, B.W, Stoddard, B.L. Deposit date: 2014-08-20 Release date: 2015-01-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
4R5C	Crystal structure of computational designed leucine rich repeats DLRR_E in space group of P212121 Descriptor: 1,2-ETHANEDIOL, Leucine rich repeat protein Authors: Shen, B.W, Stoddard, B.L. Deposit date: 2014-08-21 Release date: 2015-01-07 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
4V8W	Structure and conformational variability of the Mycobacterium tuberculosis fatty acid synthase multienzyme complex Descriptor: FLAVIN MONONUCLEOTIDE, TYPE-I FATTY ACID SYNTHASE Authors: Ciccarelli, L, Connell, S.R, Enderle, M, Mills, D.J, Vonck, J, Grininger, M. Deposit date: 2013-04-18 Release date: 2014-07-09 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (17.5 Å) Cite: Structure and Conformational Variability of the Mycobacterium Tuberculosis Fatty Acid Synthase Multienzyme Complex. Structure, 21, 2013
4V3R	Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd generation N-cap. Descriptor: MAGNESIUM ION, YIII_M5_AII Authors: Reichen, C, Madhurantakam, C, Pluckthun, A, Mittl, P. Deposit date: 2014-10-20 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Structures of Designed Armadillo-Repeat Proteins Show Propagation of Inter-Repeat Interface Effects Acta Crystallogr.,Sect.D, 72, 2016
4V3O	Designed armadillo repeat protein with 5 internal repeats, 2nd generation C-cap and 3rd generation N-cap. Descriptor: ACETATE ION, CALCIUM ION, YIII_M5_AII Authors: Reichen, C, Madhurantakam, C, Pluckthun, A, Mittl, P. Deposit date: 2014-10-20 Release date: 2016-01-13 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of Designed Armadillo-Repeat Proteins Show Propagation of Inter-Repeat Interface Effects Acta Crystallogr.,Sect.D, 72, 2016
4V8V	Structure and conformational variability of the Mycobacterium tuberculosis fatty acid synthase multienzyme complex Descriptor: FLAVIN MONONUCLEOTIDE, TYPE-I FATTY ACID SYNTHASE Authors: Ciccarelli, L, Connell, S.R, Enderle, M, Mills, D.J, Vonck, J, Grininger, M. Deposit date: 2013-04-18 Release date: 2014-07-09 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (20 Å) Cite: Structure and Conformational Variability of the Mycobacterium Tuberculosis Fatty Acid Synthase Multienzyme Complex. Structure, 21, 2013
4R6F	Crystal structure of computational designed protein DLRR_I Descriptor: Leucine rich repeat DLRR_I Authors: Shen, B.W, Stoddard, B.L. Deposit date: 2014-08-25 Release date: 2015-01-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Control of repeat-protein curvature by computational protein design. Nat.Struct.Mol.Biol., 22, 2015
2WQH	Crystal structure of CTPR3Y3 Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ... Authors: Krachler, A.M, Sharma, A, Kleanthous, C. Deposit date: 2009-08-21 Release date: 2010-04-07 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Self-association of TPR domains: Lessons learned from a designed, consensus-based TPR oligomer. Proteins, 78, 2010
7TAL	LOV2-DARPIN fusion : D4_deltaDARP Descriptor: D4_deltaDARP LOV2-DARPin fusion, FLAVIN MONONUCLEOTIDE, MAGNESIUM ION Authors: Mittl, P. Deposit date: 2021-12-21 Release date: 2023-07-05 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.1 Å) Cite: LOV2-DARPIN fusion : D4_deltaDARP To Be Published

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