Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9EN2
DownloadVisualize
BU of 9en2 by Molmil
Crystal structure of the metalloproteinase enhancer PCPE-1 complexed with nanobodies VHH-H4 and VHH-I5
Descriptor: CALCIUM ION, GLYCEROL, Procollagen C-endopeptidase enhancer 1, ...
Authors:Lagoutte, P, Gueguen-Chaignon, V, Bourhis, J.-M, Vadon-Le Goff, S.
Deposit date:2024-03-12
Release date:2024-07-03
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mono- and Bi-specific Nanobodies Targeting the CUB Domains of PCPE-1 Reduce the Proteolytic Processing of Fibrillar Procollagens.
J.Mol.Biol., 436, 2024
9EMV
DownloadVisualize
BU of 9emv by Molmil
SARS-CoV-2 nsp10-16 methyltransferase in complex with Sangivamycin and m7GpppA (Cap0-analog)/m7GpppAm (Cap1-analog)
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Scheer, T.E.S.
Deposit date:2024-03-11
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
9EML
DownloadVisualize
BU of 9eml by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and m7GpppA (Cap0-analog)/m7GpppAm (Cap1-analog)
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-03-08
Release date:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
9EMJ
DownloadVisualize
BU of 9emj by Molmil
SARS-CoV-2 methyltransferase nsp10-16 in complex with Toyocamycin and m7GpppA (Cap0-analog)
Descriptor: 1,2-ETHANEDIOL, 2'-O-methyltransferase nsp16, 4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrile, ...
Authors:Kremling, V, Sprenger, J, Oberthuer, D, Kiene, A.
Deposit date:2024-03-08
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug development
To Be Published
9EME
DownloadVisualize
BU of 9eme by Molmil
AL amyloid fibril from the FOR103 light chain
Descriptor: lambda 3 immunoglobulin light chain fragment, residues 2-116
Authors:Pfeiffer, P.B, Karimi-Farsijani, S, Kupfer, N, Schmidt, M, Faendrich, M.
Deposit date:2024-03-08
Release date:2024-06-26
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Light chain mutations contribute to defining the fibril morphology in systemic AL amyloidosis.
Nat Commun, 15, 2024
9EMC
DownloadVisualize
BU of 9emc by Molmil
RUVBL1/2 in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RuvB-like 1, ...
Authors:Lopez-Perrote, A, Llorca, O, Garcia-Martin, C.
Deposit date:2024-03-11
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Mechanism of allosteric inhibition of RUVBL1-RUVBL2 by the small-molecule CB-6644
Cell Rep Phys Sci, 2024
9EMB
DownloadVisualize
BU of 9emb by Molmil
Structure of KefC Asp156Asn variant
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, ADENOSINE MONOPHOSPHATE, Glutathione-regulated potassium-efflux system protein KefC
Authors:Gulati, A, Kokane, S, Drew, D.
Deposit date:2024-03-07
Release date:2024-06-05
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Structure of KefC Asp156Asn variant
To Be Published
9EMA
DownloadVisualize
BU of 9ema by Molmil
RUVBL1/2 in complex with ATP and CB-6644 inhibitor
Descriptor: 5-chloranyl-2-ethoxy-4-fluoranyl-~{N}-[4-[[3-(methoxymethyl)-1-oxidanylidene-6,7-dihydro-5~{H}-pyrazolo[1,2-a][1,2]benzodiazepin-2-yl]amino]-2,2-dimethyl-4-oxidanylidene-butyl]benzamide, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Lopez-Perrote, A, Llorca, O, Garcia-Martin, C.
Deposit date:2024-03-07
Release date:2024-05-15
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Mechanism of allosteric inhibition of RUVBL1-RUVBL2 by the small-molecule CB-6644
Cell Rep Phys Sci, 2024
9EM1
DownloadVisualize
BU of 9em1 by Molmil
Human pyridoxal phosphatase in complex with 7,8-dihydroxyflavone and phosphate
Descriptor: 7,8-bis(oxidanyl)-2-phenyl-chromen-4-one, Chronophin, GLYCEROL, ...
Authors:Brenner, M, Gohla, A, Schindelin, H.
Deposit date:2024-03-07
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase.
Elife, 13, 2024
9DNA
DownloadVisualize
BU of 9dna by Molmil
CRYSTAL STRUCTURE ANALYSIS OF AN A-DNA FRAGMENT AT 1.8 ANGSTROMS RESOLUTION. D(GCCCGGGC)
Descriptor: DNA (5'-D(*GP*CP*CP*CP*GP*GP*GP*C)-3')
Authors:Heinemann, U.
Deposit date:1987-07-10
Release date:1988-01-16
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analysis of an A-DNA fragment at 1.8 A resolution: d(GCCCGGGC).
Nucleic Acids Res., 15, 1987
9CKV
DownloadVisualize
BU of 9ckv by Molmil
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Werther, R, Nguyen, A, Estrada Alamo, K.A, Wang, X, Campbell, M.G.
Deposit date:2024-07-09
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:De Novo Design of Integrin alpha5beta1 Modulating Proteins for Regenerative Medicine
To Be Published
9CK0
DownloadVisualize
BU of 9ck0 by Molmil
Cocrystal of PPARg LBD and NFKBIB / IKBB peptide with agonist GW1929
Descriptor: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, NF-kappa-B inhibitor beta, Peroxisome proliferator-activated receptor gamma
Authors:Nemetchek, M.D, McClelland, L.J, Hughes, T.S.
Deposit date:2024-07-08
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Cocrystal of PPARg LBD with NFKBIB / IKBB peptide containing N-anchor motif LxxLL and agonist GW1929
To Be Published
9CJA
DownloadVisualize
BU of 9cja by Molmil
Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure
Descriptor: ZINC ION, Zinc finger protein 711
Authors:Rua, A.J, Alexandrescu, A.T.
Deposit date:2024-07-05
Release date:2024-07-17
Method:SOLUTION NMR
Cite:Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure
To Be Published
9CGT
DownloadVisualize
BU of 9cgt by Molmil
STRUCTURE OF CYCLODEXTRIN GLYCOSYLTRANSFERASE COMPLEXED WITH A THIO-MALTOPENTAOSE
Descriptor: CALCIUM ION, PROTEIN (CYCLODEXTRIN-GLYCOSYLTRANSFERASE), alpha-D-glucopyranose-(1-4)-4-thio-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-4-thio-alpha-D-glucopyranose-(1-4)-1-thio-alpha-D-glucopyranose
Authors:Schmidt, A.K, Schulz, G.E.
Deposit date:1998-09-27
Release date:1998-10-14
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Substrate binding to a cyclodextrin glycosyltransferase and mutations increasing the gamma-cyclodextrin production.
Eur.J.Biochem., 255, 1998
9CGM
DownloadVisualize
BU of 9cgm by Molmil
The Structure of Spiroplasma Virus 4
Descriptor: Capsid protein VP1, DNA binding protein ORF8
Authors:Mietzsch, M, McKenna, R.
Deposit date:2024-06-30
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:The Structure of Spiroplasma Virus 4: Exploring the Capsid Diversity of the Microviridae
Viruses, 2024
9CEQ
DownloadVisualize
BU of 9ceq by Molmil
Lanthanide Binding Tag complex LBT3-NH2:La3+
Descriptor: LANTHANUM (III) ION, Lanthanide Binding Tag Peptide
Authors:Kt, S, Messinger, R.J, Favaro, D.C.
Deposit date:2024-06-27
Release date:2024-07-17
Method:SOLUTION NMR
Cite:Role of Water in the Selective Complexation of Rare Earth Elements by Lanthanide Binding Tag Peptides
To Be Published
9CE9
DownloadVisualize
BU of 9ce9 by Molmil
Solution NMR structure of the fungal loosenin PcaLOOL12 from Phanerochaete carnosa
Descriptor: RlpA-like protein double-psi beta-barrel domain-containing protein
Authors:Buchko, G.W, Master, E.R.
Deposit date:2024-06-26
Release date:2024-07-10
Last modified:2024-07-17
Method:SOLUTION NMR
Cite:Bio-SANS investigation of fungal loosenins reveal substrate dependent impacts of protein action on inter-fibril distance and packing order of cellulosic substrates
To Be Published
9CBE
DownloadVisualize
BU of 9cbe by Molmil
Structure of a type III antifreeze protein isoform HPLC12 re-refined using standard protocols
Descriptor: Type-3 ice-structuring protein HPLC 12
Authors:Wlodawer, A, Dauter, Z.
Deposit date:2024-06-19
Release date:2024-07-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:In some cases more complicated approaches to refinement of macromolecular structures are not necessary.
Iucrj, 11, 2024
9CA2
DownloadVisualize
BU of 9ca2 by Molmil
ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
Descriptor: CARBONIC ANHYDRASE II, MERCURY (II) ION, ZINC ION
Authors:Alexander, R.S, Christianson, D.W.
Deposit date:1991-07-09
Release date:1992-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Engineering the hydrophobic pocket of carbonic anhydrase II.
Biochemistry, 30, 1991
9CA1
DownloadVisualize
BU of 9ca1 by Molmil
Human TOP3B-TDRD3 core complex in DNA religation state
Descriptor: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ...
Authors:Yang, X, Chen, X, Yang, W, Pommier, Y.
Deposit date:2024-06-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics
To Be Published
9CA0
DownloadVisualize
BU of 9ca0 by Molmil
Human TOP3B-TDRD3 core complex in DNA pre-cleavage state
Descriptor: DNA (5'-D(*AP*TP*T)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*AP*A)-3'), DNA topoisomerase 3-beta-1, ...
Authors:Yang, X, Chen, X, Yang, W, Pommier, Y.
Deposit date:2024-06-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics
To Be Published
9C9Y
DownloadVisualize
BU of 9c9y by Molmil
Human TOP3B-TDRD3 core complex in DNA pre-cleavage state
Descriptor: DNA (5'-D(P*AP*CP*TP*AP*AP*AP*AP*T)-3'), DNA topoisomerase 3-beta-1, MANGANESE (II) ION, ...
Authors:Yang, X, Chen, X, Yang, W, Pommier, Y.
Deposit date:2024-06-16
Release date:2024-07-17
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Structural Insights into human Topoisomerase 3-beta DNA and RNA catalytic cycles and topo-gate dynamics
To Be Published
9C8S
DownloadVisualize
BU of 9c8s by Molmil
CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate
Descriptor: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine, Acetyl-coenzyme A synthetase
Authors:Xu, Z, Schnicker, N.J, Jezeski, A.J, Krysan, D.J.
Deposit date:2024-06-12
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:CryoEM structure of Cryptococcus neoformans H99 Acetyl-CoA Synthetase in complex with adenosine-5'-ethylphosphate
To Be Published
9C8R
DownloadVisualize
BU of 9c8r by Molmil
CryoEM structure of Apo Cryptococcus neoformans H99 Acetyl-CoA Synthetase
Descriptor: Acetyl-coenzyme A synthetase
Authors:Xu, Z, Schnicker, N.J, Jezeski, A.J, Krysan, D.J.
Deposit date:2024-06-12
Release date:2024-07-03
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:CryoEM structure of Apo Cryptococcus neoformans H99 Acetyl-CoA Synthetase
To Be Published
9C8J
DownloadVisualize
BU of 9c8j by Molmil
X-ray crystal structure of AmpC beta-lactamase with inhibitor
Descriptor: AmpC Beta-lactamase, N-(1-acetyl-2,3-dihydro-1H-indol-4-yl)-3-chloro-2-hydroxybenzene-1-sulfonamide
Authors:Liu, F, Shoichet, B.K.
Deposit date:2024-06-12
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase
To Be Published

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon