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1SG1
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BU of 1sg1 by Molmil
Crystal Structure of the Receptor-Ligand Complex between Nerve Growth Factor and the Common Neurotrophin Receptor p75
Descriptor: Beta-nerve growth factor, CHLORIDE ION, Tumor necrosis factor receptor superfamily member 16
Authors:He, X.L, Garcia, K.C.
Deposit date:2004-02-22
Release date:2004-06-01
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of nerve growth factor complexed with the shared neurotrophin receptor p75
Science, 304, 2004
1DGE
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BU of 1dge by Molmil
AN ALKALI METAL ION SIZE-DEPENDENT SWITCH IN THE ACTIVE SITE STRUCTURE OF DIALKYLGLYCINE DECARBOXYLASE
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DIALKYLGLYCINE DECARBOXYLASE, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Hohenester, E, Jansonius, J.N.
Deposit date:1994-06-29
Release date:1994-09-30
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An alkali metal ion size-dependent switch in the active site structure of dialkylglycine decarboxylase.
Biochemistry, 33, 1994
1Z4O
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BU of 1z4o by Molmil
Structure of beta-phosphoglucomutase with inhibitor bound alpha-galactose 1-phosphate
Descriptor: 1-O-phosphono-alpha-D-galactopyranose, Beta-phosphoglucomutase, MAGNESIUM ION
Authors:Tremblay, L.W, Zhang, G, Dai, J, Dunaway-Mariano, D, Allen, K.N.
Deposit date:2005-03-16
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chemical Confirmation of a Pentavalent Phosphorane in Complex with beta-Phosphoglucomutase
J.Am.Chem.Soc., 127, 2005
4H5N
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BU of 4h5n by Molmil
HSC70 NBD with PO4, Na, Cl
Descriptor: CHLORIDE ION, GLYCEROL, Heat shock cognate 71 kDa protein, ...
Authors:Stec, B.
Deposit date:2012-09-18
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:New crystal structures of HSC-70 ATP binding domain confirm the role of individual binding pockets and suggest a new method of inhibition.
Biochimie, 108, 2015
5I9W
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BU of 5i9w by Molmil
Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with ANP
Descriptor: 1,2-ETHANEDIOL, Ephrin type-A receptor 2, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:Kudlinzki, D, Linhard, V.L, Gande, S.L, Sreeramulu, S, Saxena, K, Heinzlmeir, S, Medard, G, Kuester, B, Schwalbe, H.
Deposit date:2016-02-21
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.359 Å)
Cite:Chemical Proteomics and Structural Biology Define EPHA2 Inhibition by Clinical Kinase Drugs.
ACS Chem. Biol., 11, 2016
3BXS
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BU of 3bxs by Molmil
Crystal Structures Of Highly Constrained Substrate And Hydrolysis Products Bound To HIV-1 Protease. Implications For Catalytic Mechanism
Descriptor: (9S,12S)-9-(1-methylethyl)-7,10-dioxo-2-oxa-8,11-diazabicyclo[12.2.2]octadeca-1(16),14,17-triene-12-carboxylic acid, Protease, SULFATE ION
Authors:Tyndall, J.D, Pattenden, L.K, Reid, R.C, Hu, S.H, Alewood, D, Alewood, P.F, Walsh, T, Fairlie, D.P, Martin, J.L.
Deposit date:2008-01-14
Release date:2008-03-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of Highly Constrained Substrate and Hydrolysis Products Bound to HIV-1 Protease. Implications for the Catalytic Mechanism
Biochemistry, 47, 2008
4H5W
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HSC70 NBD with betaine
Descriptor: ACETATE ION, Heat shock cognate 71 kDa protein, MAGNESIUM ION, ...
Authors:Stec, B.
Deposit date:2012-09-19
Release date:2014-03-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:New crystal structures of HSC-70 ATP binding domain confirm the role of individual binding pockets and suggest a new method of inhibition.
Biochimie, 108, 2015
2RJ9
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BU of 2rj9 by Molmil
B-specific alpha-1,3-galactosyltransferase (GTB) + UDP+ Amino-deoxy-acceptor
Descriptor: Glycoprotein-fucosylgalactoside alpha-galactosyltransferase, MANGANESE (II) ION, URIDINE-5'-DIPHOSPHATE, ...
Authors:Evans, S.V, Alfaro, J.A.
Deposit date:2007-10-14
Release date:2008-02-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:ABO(H) blood group A and B glycosyltransferases recognize substrate via specific conformational changes.
J.Biol.Chem., 283, 2008
2NPZ
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BU of 2npz by Molmil
Crystal structure of junctioned hairpin ribozyme incorporating synthetic propyl linker
Descriptor: 5'-R(*CP*GP*GP*UP*GP*AP*GP*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3', ...
Authors:MacElrevey, C, Krucinska, J, Wedekind, J.E.
Deposit date:2006-10-30
Release date:2007-08-14
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:A posteriori design of crystal contacts to improve the X-ray diffraction properties of a small RNA enzyme.
Acta Crystallogr.,Sect.D, 63, 2007
1CA9
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BU of 1ca9 by Molmil
STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A PEPTIDE FROM TNF-R2
Descriptor: PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2), PROTEIN (TNF-R2)
Authors:Park, Y.C, Burkitt, V, Villa, A.R, Tong, L, Wu, H.
Deposit date:1999-02-25
Release date:1999-04-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for self-association and receptor recognition of human TRAF2.
Nature, 398, 1999
2CII
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BU of 2cii by Molmil
The crystal structure of H-2Db complexed with a partial peptide epitope suggests an MHC Class I assembly-intermediate
Descriptor: BETA-2-MICROGLOBULIN, GLYCEROL, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN D-B ALPHA CHAIN, ...
Authors:Glithero, A, Tormo, J, Doering, K, Kojima, M, Jones, E.Y, Elliott, T.
Deposit date:2006-03-21
Release date:2006-03-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:The crystal structure of H-2D(b) complexed with a partial peptide epitope suggests a major histocompatibility complex class I assembly intermediate.
J. Biol. Chem., 281, 2006
1CCA
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BU of 1cca by Molmil
THE ASP-HIS-FE TRIAD OF CYTOCHROME C PEROXIDASE CONTROLS THE REDUCTION POTENTIAL, ELECTRONIC STRUCTURE, AND COUPLING OF THE TRYPTOPHAN FREE-RADICAL TO THE HEME
Descriptor: CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Goodin, D.B, Mcree, D.E.
Deposit date:1993-01-04
Release date:1993-10-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Asp-His-Fe triad of cytochrome c peroxidase controls the reduction potential, electronic structure, and coupling of the tryptophan free radical to the heme.
Biochemistry, 32, 1993
1PLU
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BU of 1plu by Molmil
PECTATE LYASE C FROM ERWINIA CHRYSANTHEMI WITH 1 LU+3 ION IN THE PUTATIVE CALCIUM BINDING SITE
Descriptor: LUTETIUM (III) ION, PROTEIN (PECTATE LYASE C)
Authors:Yoder, M.D, Jurnak, F.A.
Deposit date:1999-06-04
Release date:1999-07-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Refined Three-Dimensional Structure of Pectate Lyase C from Erwinia chrysanthemi at 2.2 Angstrom Resolution (Implications for an Enzymatic Mechanism).
Plant Physiol., 107, 1995
1SVG
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BU of 1svg by Molmil
Crystal Structure of Protein Kinase A in Complex with Azepane Derivative 4
Descriptor: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR, ALPHA FORM, N-{(3R,4R)-4-[4-(2-FLUORO-6-HYDROXY-3-METHOXY-BENZOYL)-BENZOYLAMINO]-AZEPAN-3-YL}ISONICOTINAMIDE, ...
Authors:Breitenlechner, C.B, Wegge, T, Berillon, L, Graul, K, Marzenell, K, Friebe, W.-G, Thomas, U, Schumacher, R, Huber, R, Engh, R.A, Masjost, B.
Deposit date:2004-03-29
Release date:2005-03-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Structure-based optimization of novel azepane derivatives as PKB inhibitors
J.Med.Chem., 47, 2004
5VMD
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BU of 5vmd by Molmil
Crystal structure of UBR-box from UBR6 in a domain-swapping conformation
Descriptor: 1,2-ETHANEDIOL, F-box only protein 11, ZINC ION
Authors:Munoz-Escobar, J, Kozlov, G, Gehring, K.
Deposit date:2017-04-27
Release date:2017-07-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Crystal structure of the UBR-box from UBR6/FBXO11 reveals domain swapping mediated by zinc binding.
Protein Sci., 26, 2017
3MYN
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BU of 3myn by Molmil
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
Descriptor: CYANIDE ION, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Bowden, E.F, de Serrano, V.S, D'Antonio, E.L, Franzen, S.
Deposit date:2010-05-10
Release date:2011-04-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.194 Å)
Cite:Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.
Biochemistry, 50, 2011
4L4C
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BU of 4l4c by Molmil
Structure of L358P/K178G mutant of P450cam bound to camphor
Descriptor: CAMPHOR, Camphor 5-monooxygenase, POTASSIUM ION, ...
Authors:Batabyal, D, Li, H, Poulos, T.L.
Deposit date:2013-06-07
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Synergistic Effects of Mutations in Cytochrome P450cam Designed To Mimic CYP101D1.
Biochemistry, 52, 2013
3MYM
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BU of 3mym by Molmil
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
Descriptor: CYANIDE ION, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:de Serrano, V.S, D'Antonio, E.L, Franzen, S, Bowden, E.F.
Deposit date:2010-05-10
Release date:2011-04-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.
Biochemistry, 50, 2011
5ONR
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BU of 5onr by Molmil
Alzheimer's Amyloid-Beta Peptide Fragment 1-40 in Complex with Thermolysin
Descriptor: Amyloid-beta A4 protein, CALCIUM ION, DIMETHYL SULFOXIDE, ...
Authors:Leite, J.P, Gales, L.
Deposit date:2017-08-04
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Alzheimer's A beta1-40peptide degradation by thermolysin: evidence of inhibition by a C-terminal A beta product.
FEBS Lett., 593, 2019
7FF0
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BU of 7ff0 by Molmil
Pseudomonas aeruginosa Virulence Factor Regulator with cAMP ligand and auranofin
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, GOLD ION, SULFATE ION, ...
Authors:Chew, B.L.A, Luo, D.
Deposit date:2021-07-22
Release date:2022-07-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for the inhibitory mechanism of auranofin and gold(I) analogues against Pseudomonas aeruginosa global virulence factor regulator Vfr.
Comput Struct Biotechnol J, 21, 2023
4L4D
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BU of 4l4d by Molmil
Structure of cyanide and camphor bound P450cam mutant L358A
Descriptor: CAMPHOR, CYANIDE ION, Camphor 5-monooxygenase, ...
Authors:Batabyal, D, Li, H, Poulos, T.L.
Deposit date:2013-06-07
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Synergistic Effects of Mutations in Cytochrome P450cam Designed To Mimic CYP101D1.
Biochemistry, 52, 2013
1OG2
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Structure of human cytochrome P450 CYP2C9
Descriptor: CYTOCHROME P450 2C9, HEME C
Authors:Williams, P.A, Cosme, J, Ward, A, Angove, H.C, Matak Vinkovic, D, Jhoti, H.
Deposit date:2003-04-23
Release date:2003-07-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Human Cytochrome P450 2C9 with Bound Warfarin
Nature, 424, 2003
4N17
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BU of 4n17 by Molmil
Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, With bound beta-D-galacturonate
Descriptor: CALCIUM ION, CHLORIDE ION, TRAP dicarboxylate transporter, ...
Authors:Vetting, M.W, Toro, R, Bhosle, R, Al Obaidi, N.F, Zhao, S, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Imker, H.J, Jacobson, M.P, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2013-10-03
Release date:2013-10-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
3FP5
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BU of 3fp5 by Molmil
Crystal structure of ACBP from Moniliophthora perniciosa
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Acyl-CoA Binding Protein, ZINC ION
Authors:Monzani, P.S, Pereira, H.M, Melo, F.A, Meirelles, F.V, Oliva, G, Cascardo, J.C.M.
Deposit date:2009-01-04
Release date:2009-11-17
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:A new topology of ACBP from Moniliophthora perniciosa.
Biochim.Biophys.Acta, 1804, 2010
1OG5
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BU of 1og5 by Molmil
Structure of human cytochrome P450 CYP2C9
Descriptor: CYTOCHROME P450 2C9, HEME C, S-WARFARIN
Authors:Williams, P.A, Cosme, J, Ward, A, Angove, H.C, Matak Vinkovic, D, Jhoti, H.
Deposit date:2003-04-24
Release date:2003-07-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal Structure of Human Cytochrome P450 2C9 with Bound Warfarin
Nature, 424, 2003

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