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9B0S
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BU of 9b0s by Molmil
In situ human top-top di-ribosome structure (Composite map)
Descriptor: 18S rRNA [Homo sapiens], 28S rRNA [Homo sapiens], 40S ribosomal protein S10, ...
Authors:Wei, Z, Yong, X.
Deposit date:2024-03-12
Release date:2025-03-19
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:In situ human top-back di-ribosome structure
To Be Published
6KGX
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BU of 6kgx by Molmil
Structure of the phycobilisome from the red alga Porphyridium purpureum
Descriptor: Allophycocyanin alpha subunit, Allophycocyanin beta 18 subunit, Allophycocyanin beta subunit, ...
Authors:Sui, S.F, Ma, J.F, You, X, Sun, S.
Deposit date:2019-07-12
Release date:2019-12-11
Last modified:2025-04-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of energy transfer in Porphyridium purpureum phycobilisome.
Nature, 579, 2020
8IYJ
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BU of 8iyj by Molmil
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Descriptor: Cilia and flagella-associated protein 77, Cilia- and flagella-associated protein 107, Cilia- and flagella-associated protein 141, ...
Authors:Zhou, L.N, Gui, M, Wu, J.P.
Deposit date:2023-04-05
Release date:2023-07-05
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structures of sperm flagellar doublet microtubules expand the genetic spectrum of male infertility.
Cell, 186, 2023
4PV2
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BU of 4pv2 by Molmil
Crystal structure of potassium-dependent plant-type L-asparaginase from Phaseolus vulgaris in complex with K+ and Na+ cations
Descriptor: L-ASPARAGINASE ALPHA SUBUNIT, L-ASPARAGINASE BETA SUBUNIT, NITRATE ION, ...
Authors:Bejger, M, Gilski, M, Imiolczyk, B, Clavel, D, Jaskolski, M.
Deposit date:2014-03-14
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Na+/K+ exchange switches the catalytic apparatus of potassium-dependent plant L-asparaginase
Acta Crystallogr.,Sect.D, 70, 2014
9CPB
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BU of 9cpb by Molmil
Atomic model of bovine Fallopian tube cilia doublet microtubule (48-nm periodicity)
Descriptor: Armadillo repeat containing 4, CFAP141, CFAP276, ...
Authors:Sun, C, Zeng, J, Zhang, R.
Deposit date:2024-07-18
Release date:2024-10-30
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structural diversity of axonemes across mammalian motile cilia.
Nature, 637, 2025
9CPC
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BU of 9cpc by Molmil
Atomic model of porcine brain ventricles cilia doublet microtubule (48-nm periodicity)
Descriptor: Armadillo repeat-containing protein 4 isoform 1, CFAP107/C1orf158, Chromosome 1 C15orf65 homolog, ...
Authors:Sun, C, Zeng, J, Zhang, R.
Deposit date:2024-07-18
Release date:2024-10-23
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Structural diversity of axonemes across mammalian motile cilia.
Nature, 637, 2025
4YPB
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BU of 4ypb by Molmil
Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schureck, M.A, Dunkle, J.A, Maehigashi, T, Dunham, C.M.
Deposit date:2015-03-12
Release date:2015-10-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Defining the mRNA recognition signature of a bacterial toxin protein.
Proc.Natl.Acad.Sci.USA, 112, 2015
7QIZ
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BU of 7qiz by Molmil
Specific features and methylation sites of a plant 80S ribosome
Descriptor: 1,4-DIAMINOBUTANE, 18S, 25S rRNA, ...
Authors:Cottilli, P, Itoh, Y, Amunts, A.
Deposit date:2021-12-16
Release date:2022-08-03
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:Cryo-EM structure and rRNA modification sites of a plant ribosome.
Plant Commun., 3, 2022
5FCJ
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BU of 5fcj by Molmil
Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M.
Deposit date:2015-12-15
Release date:2016-05-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol., 428, 2016
9O3I
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BU of 9o3i by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Syroegin, E.A, Aleksandrova, E.V, Kruglov, A.A, Paranjpe, M.N, Svetlov, M.S, Polikanov, Y.S.
Deposit date:2025-04-07
Release date:2025-06-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into context-specific inhibition of bacterial translation by macrolides.
Biorxiv, 2025
8QOI
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BU of 8qoi by Molmil
Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
Descriptor: 18S rRNA (1740-MER), 28S rRNA (3773-MER), 40S ribosomal protein S10, ...
Authors:Holvec, S, Barchet, C, Frechin, L, Hazemann, I, von Loeffelholz, O, Klaholz, B.P.
Deposit date:2023-09-29
Release date:2024-06-12
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (1.9 Å)
Cite:The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA.
Nat.Struct.Mol.Biol., 31, 2024
5FCI
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BU of 5fci by Molmil
Structure of the vacant uL3 W255C mutant 80S yeast ribosome
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Mailliot, J, Garreau de Loubresse, N, Yusupova, G, Dinman, J.D, Yusupov, M.
Deposit date:2015-12-15
Release date:2016-05-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency.
J.Mol.Biol., 428, 2016
8Q87
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BU of 8q87 by Molmil
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-18
Release date:2024-08-28
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Febs Lett., 598, 2024
8Q7Z
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BU of 8q7z by Molmil
Structure of the G. gallus 80S non-rotated ribosome
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Nurullina, L, Jenner, L, Yusupov, M.
Deposit date:2023-08-17
Release date:2024-08-28
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Febs Lett., 598, 2024
7PWO
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BU of 7pwo by Molmil
Cryo-EM structure of Giardia lamblia ribosome at 2.75 A resolution
Descriptor: 40S ribosomal protein S21, 40S ribosomal protein S26, 40S ribosomal protein S30, ...
Authors:Hiregange, D.G, Rivalta, A, Bose, T, Breiner-Goldstein, E, Samiya, S, Cimicata, G, Kulakova, L, Zimmerman, E, Bashan, A, Herzberg, O, Yonath, A.
Deposit date:2021-10-07
Release date:2022-04-20
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia.
Nucleic Acids Res., 50, 2022
8UVS
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BU of 8uvs by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution
Descriptor: (2R,4R,4aS,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)-4-({[2-(oxan-4-yl)ethyl]amino}methyl)octahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4a,7,9(10aH)-tetrol, 16S Ribosomal RNA, 23S Ribosomal RNA, ...
Authors:Killam, B.Y, Phelps, G.A, Lee, R.E, Polikanov, Y.S.
Deposit date:2023-11-03
Release date:2024-08-07
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Development of 2nd generation aminomethyl spectinomycins that overcome native efflux in Mycobacterium abscessus.
Proc.Natl.Acad.Sci.USA, 121, 2024
9G8M
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BU of 9g8m by Molmil
human 80S ribosome bound by a SKI2-exosome complex
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Koegel, A, Keidel, A, Loukeri, M.J, Kuhn, C.C, Langer, L.M, Schaefer, I.B, Conti, E.
Deposit date:2024-07-23
Release date:2024-10-23
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis of mRNA decay by the human exosome-ribosome supercomplex.
Nature, 635, 2024
8UVR
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BU of 8uvr by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution
Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Killam, B.Y, Phelps, G.A, Lee, R.E, Polikanov, Y.S.
Deposit date:2023-11-03
Release date:2024-08-07
Last modified:2025-03-19
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Development of 2nd generation aminomethyl spectinomycins that overcome native efflux in Mycobacterium abscessus.
Proc.Natl.Acad.Sci.USA, 121, 2024
9NLE
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BU of 9nle by Molmil
E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:ABCF PtIM positioning affects tRNA dynamics
To Be Published
9NLQ
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BU of 9nlq by Molmil
E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E.coli Initiation complex with YbiT-EQ2 (Hydrolytic-II)
To Be Published
9NJF
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BU of 9njf by Molmil
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-02-27
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
To Be Published
9NLB
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BU of 9nlb by Molmil
E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation
To Be Published
9NL7
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BU of 9nl7 by Molmil
E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-02
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation
To Be Published
9NLS
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BU of 9nls by Molmil
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
To Be Published
9NLF
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BU of 9nlf by Molmil
E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Singh, S, Hunt, J.F.
Deposit date:2025-03-03
Release date:2025-04-02
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation
To Be Published

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PDB entries from 2025-07-16

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