5K8J
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![BU of 5k8j by Molmil](/molmil-images/mine/5k8j) | Structure of Caulobacter crescentus VapBC1 (apo form) | Descriptor: | GLYCEROL, Ribonuclease VapC, VapB family protein | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | Deposit date: | 2016-05-30 | Release date: | 2016-12-28 | Last modified: | 2018-01-17 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
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6SD6
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![BU of 6sd6 by Molmil](/molmil-images/mine/6sd6) | Structure of VapBC from Shigella sonnei | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | Authors: | Lea, S.M, Hollingshead, S. | Deposit date: | 2019-07-26 | Release date: | 2020-08-26 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.61 Å) | Cite: | Polymorphisms in the VapBC toxin:antitoxin system mediate high frequency plasmid loss in Shigella sonnei To Be Published
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5SV2
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![BU of 5sv2 by Molmil](/molmil-images/mine/5sv2) | Toxin VapC21 from Mycobacterium tuberculosis | Descriptor: | Ribonuclease VapC21 | Authors: | Valadares, N.F. | Deposit date: | 2016-08-04 | Release date: | 2016-09-14 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.31 Å) | Cite: | Crystal structure of VapC21 from Mycobacterium tuberculosis at 1.31 angstrom resolution. Biochem.Biophys.Res.Commun., 478, 2016
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7VWO
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![BU of 7vwo by Molmil](/molmil-images/mine/7vwo) | |
1Y82
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![BU of 1y82 by Molmil](/molmil-images/mine/1y82) | Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus | Descriptor: | UNKNOWN ATOM OR ION, hypothetical protein | Authors: | Horanyi, P, Tempel, W, Habel, J, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Florence, Q, Zhou, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG) | Deposit date: | 2004-12-10 | Release date: | 2005-01-25 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Conserved hypothetical protein Pfu-367848-001 from Pyrococcus furiosus To be published
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3TND
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![BU of 3tnd by Molmil](/molmil-images/mine/3tnd) | Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex | Descriptor: | Antitoxin VapB, SODIUM ION, SULFATE ION, ... | Authors: | Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. | Deposit date: | 2011-09-01 | Release date: | 2011-11-02 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. J.Mol.Biol., 414, 2011
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6IFM
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![BU of 6ifm by Molmil](/molmil-images/mine/6ifm) | Crystal structure of DNA bound VapBC from Salmonella typhimurium | Descriptor: | Antitoxin VapB, DNA backward (27-MER), DNA forward (27-MER), ... | Authors: | Park, D.W, Lee, B.J. | Deposit date: | 2018-09-20 | Release date: | 2020-01-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.804 Å) | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J., 34, 2020
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5L6L
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![BU of 5l6l by Molmil](/molmil-images/mine/5l6l) | Structure of Caulobacter crescentus VapBC1 bound to operator DNA | Descriptor: | DNA (27-MER), Ribonuclease VapC, VapB family protein | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | Deposit date: | 2016-05-30 | Release date: | 2016-12-28 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
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5L6M
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![BU of 5l6m by Molmil](/molmil-images/mine/5l6m) | Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form) | Descriptor: | GLYCEROL, MALONATE ION, Ribonuclease VapC, ... | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | Deposit date: | 2016-05-30 | Release date: | 2016-12-28 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic Acids Res., 45, 2017
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6IFC
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![BU of 6ifc by Molmil](/molmil-images/mine/6ifc) | Crystal structure of VapBC from Salmonella typhimurium | Descriptor: | Antitoxin VapB, CALCIUM ION, tRNA(fMet)-specific endonuclease VapC | Authors: | Park, D.W, Lee, B.J. | Deposit date: | 2018-09-19 | Release date: | 2020-01-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.99 Å) | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J., 34, 2020
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3IX7
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![BU of 3ix7 by Molmil](/molmil-images/mine/3ix7) | |
3I8O
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![BU of 3i8o by Molmil](/molmil-images/mine/3i8o) | A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. | Descriptor: | ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | Authors: | Tan, K, Chhor, G, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | Deposit date: | 2009-07-09 | Release date: | 2009-07-21 | Last modified: | 2019-07-24 | Method: | X-RAY DIFFRACTION (2.638 Å) | Cite: | A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. To be Published
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2H1C
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![BU of 2h1c by Molmil](/molmil-images/mine/2h1c) | Crystal Structure of FitAcB from Neisseria gonorrhoeae | Descriptor: | ACETATE ION, MAGNESIUM ION, SULFATE ION, ... | Authors: | Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. | Deposit date: | 2006-05-16 | Release date: | 2006-09-26 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs. J.Biol.Chem., 281, 2006
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2FE1
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![BU of 2fe1 by Molmil](/molmil-images/mine/2fe1) | Crystal Structure of PAE0151 from Pyrobaculum aerophilum | Descriptor: | CALCIUM ION, CHLORIDE ION, MANGANESE (II) ION, ... | Authors: | Bunker, R.D, Baker, E.N, Arcus, V.L. | Deposit date: | 2005-12-15 | Release date: | 2005-12-27 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon. Proteins, 72, 2008
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5WZF
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![BU of 5wzf by Molmil](/molmil-images/mine/5wzf) | |
5WZ4
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![BU of 5wz4 by Molmil](/molmil-images/mine/5wz4) | |
1V8P
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![BU of 1v8p by Molmil](/molmil-images/mine/1v8p) | Crystal structure of PAE2754 from Pyrobaculum aerophilum | Descriptor: | CHLORIDE ION, hypothetical protein PAE2754 | Authors: | Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. | Deposit date: | 2004-01-12 | Release date: | 2004-02-10 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.52 Å) | Cite: | Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease J.Biol.Chem., 279, 2004
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1V8O
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![BU of 1v8o by Molmil](/molmil-images/mine/1v8o) | Crystal Structure of PAE2754 from Pyrobaculum aerophilum | Descriptor: | CHLORIDE ION, hypothetical protein PAE2754 | Authors: | Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. | Deposit date: | 2004-01-12 | Release date: | 2004-02-10 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease J.Biol.Chem., 279, 2004
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1W8I
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![BU of 1w8i by Molmil](/molmil-images/mine/1w8i) | The Structure of gene product af1683 from Archaeoglobus fulgidus. | Descriptor: | PUTATIVE VAPC RIBONUCLEASE AF_1683 | Authors: | Midwest Center for Structural Genomics (MCSG), Cuff, M.E, Zhang, R, Ginell, S.L, Xu, X, Savchenko, A, Edwards, A, Joachimiak, A. | Deposit date: | 2004-09-22 | Release date: | 2004-11-16 | Last modified: | 2017-06-28 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | The Structure of Gene Product Af1683 from Archaeoglobus Fulgidus To be Published
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5ECD
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![BU of 5ecd by Molmil](/molmil-images/mine/5ecd) | Structure of the Shigella flexneri VapC mutant D98N crystal form 1 | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, tRNA(fMet)-specific endonuclease VapC | Authors: | Xu, K. | Deposit date: | 2015-10-20 | Release date: | 2016-02-17 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Structural analysis of the active site architecture of the VapC toxin from Shigella flexneri. Proteins, 84, 2016
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5ECW
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![BU of 5ecw by Molmil](/molmil-images/mine/5ecw) | |
5ED0
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![BU of 5ed0 by Molmil](/molmil-images/mine/5ed0) | |
5ECY
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![BU of 5ecy by Molmil](/molmil-images/mine/5ecy) | |
6A7V
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![BU of 6a7v by Molmil](/molmil-images/mine/6a7v) | Crystal structure of Mycobacterium tuberculosis VapBC11 toxin-antitoxin complex | Descriptor: | Antitoxin VapB11, PENTAETHYLENE GLYCOL, Ribonuclease VapC11, ... | Authors: | Deep, A, Thakur, K.G. | Deposit date: | 2018-07-04 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.67 Å) | Cite: | Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation. Nucleic Acids Res., 46, 2018
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4CHG
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![BU of 4chg by Molmil](/molmil-images/mine/4chg) | Crystal structure of VapBC15 complex from Mycobacterium tuberculosis | Descriptor: | ANTITOXIN VAPB15, MAGNESIUM ION, MANGANESE (II) ION, ... | Authors: | Das, U, Pogenberg, V, Tiruttani Subhramanyam, U.K, Wilmanns, M, Srinivasan, A, Gourinath, S. | Deposit date: | 2013-12-02 | Release date: | 2014-11-12 | Last modified: | 2018-03-07 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Crystal Structure of the Vapbc-15 Complex from Mycobacterium Tuberculosis Reveals a Two-Metal Ion Dependent Pin-Domain Ribonuclease And a Variable Mode of Toxin-Antitoxin Assembly. J.Struct.Biol., 188, 2014
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