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PDB: 289 results

2MRE
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BU of 2mre by Molmil
NMR structure of the Rad18-UBZ/ubiquitin complex
Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-C, ZINC ION
Authors:Rizzo, A.A, Salerno, P.E, Bezsonova, I, Korzhnev, D.M.
Deposit date:2014-07-03
Release date:2014-10-22
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:NMR Structure of the Human Rad18 Zinc Finger in Complex with Ubiquitin Defines a Class of UBZ Domains in Proteins Linked to the DNA Damage Response.
Biochemistry, 53, 2014
2MOR
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BU of 2mor by Molmil
A tensor-free method for the structural and dynamical refinement of proteins using residual dipolar couplings
Descriptor: Ubiquitin
Authors:Camilloni, C, Vendruscolo, M.
Deposit date:2014-04-29
Release date:2014-06-25
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A Tensor-Free Method for the Structural and Dynamical Refinement of Proteins using Residual Dipolar Couplings.
J.Phys.Chem.B, 119, 2015
2K25
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BU of 2k25 by Molmil
Automated NMR Structure of the UBB by FAPSY
Descriptor: UBB
Authors:Lee, W, Jung, J, Lee, W.
Deposit date:2008-03-24
Release date:2008-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The Automated Suite for Protein Structure by NMR Spectroscopy
To be Published
2JZZ
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BU of 2jzz by Molmil
Solid-State NMR Structure of Microcrystalline Ubiquitin
Descriptor: Ubiquitin
Authors:Manolikas, T, Herrmann, T, Meier, B.H.
Deposit date:2008-01-22
Release date:2008-03-25
Last modified:2024-05-08
Method:SOLID-STATE NMR
Cite:Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.
J.Am.Chem.Soc., 130, 2008
1C3T
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BU of 1c3t by Molmil
ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURAL SPECIFICITY
Descriptor: PROTEIN (1D8 UBIQUITIN)
Authors:Lazar, G.A, Johnson, E.C, Desjarlais, J.R, Handel, T.M.
Deposit date:1999-07-28
Release date:1999-08-20
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Rotamer strain as a determinant of protein structural specificity.
Protein Sci., 8, 1999
2NR2
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BU of 2nr2 by Molmil
The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native states ensembles of proteins
Descriptor: Ubiquitin
Authors:Richter, B, Gsponer, J, Varnai, P, Salvatella, X, Vendruscolo, M.
Deposit date:2006-11-01
Release date:2007-05-08
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins
J.Biomol.Nmr, 37, 2007
6N13
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BU of 6n13 by Molmil
UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin
Descriptor: E3 ubiquitin-protein ligase parkin, Ubiquitin-conjugating enzyme E2 L3, ZINC ION, ...
Authors:Condos, T.E.C, Dunkerley, K.M, Freeman, E.A, Barber, K.R, Aguirre, J.D, Chaugule, V.K, Xiao, Y, Konermann, L, Walden, H, Shaw, G.S.
Deposit date:2018-11-08
Release date:2018-11-28
Last modified:2020-01-08
Method:SOLUTION NMR
Cite:Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation.
EMBO J., 37, 2018
1FXT
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BU of 1fxt by Molmil
STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTER COMPLEX
Descriptor: UBIQUITIN, UBIQUITIN-CONJUGATING ENZYME E2-24 KDA
Authors:Hamilton, K.S, Shaw, G.S, Williams, R.S, Huzil, J.T, McKenna, S, Ptak, C, Glover, M, Ellison, M.J.
Deposit date:2000-09-26
Release date:2001-10-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail.
Structure, 9, 2001
2BGF
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BU of 2bgf by Molmil
NMR structure of Lys48-linked di-ubiquitin using chemical shift perturbation data together with RDCs and 15N-relaxation data
Descriptor: DI-UBIQUITIN
Authors:Van Dijk, A.D.J, Fushman, D, Bonvin, A.M.J.J.
Deposit date:2004-12-22
Release date:2005-08-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Various Strategies of Using Residual Dipolar Couplings in NMR-Driven Protein Docking: Application to Lys48-Linked Di-Ubiquitin and Validation Against 15N-Relaxation Data
Proteins: Struct., Funct., Bioinf., 60, 2005
1YX6
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BU of 1yx6 by Molmil
Solution Structure of S5a UIM-2/Ubiquitin Complex
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, Ubiquitin
Authors:Wang, Q, Young, P, Walters, K.J.
Deposit date:2005-02-19
Release date:2005-04-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of S5a Bound to Monoubiquitin Provides a Model for Polyubiquitin Recognition
J.Mol.Biol., 348, 2005
1GJZ
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BU of 1gjz by Molmil
Solution structure of a dimeric N-terminal fragment of human ubiquitin
Descriptor: UBIQUITIN
Authors:Bolton, D, Evans, P.A, Stott, K, Broadhurst, R.W.
Deposit date:2001-08-06
Release date:2001-12-13
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Properties of a Dimeric N-Terminal Fragment of Human Ubiquitin.
J.Mol.Biol., 314, 2001
2PE9
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BU of 2pe9 by Molmil
NMR Based Structure of the Open Conformation of LYS48-Linked Di-UBiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements
Descriptor: Ubiquitin
Authors:Ryabov, Y, Fushman, D.
Deposit date:2007-04-02
Release date:2007-07-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor.
J.Am.Chem.Soc., 129, 2007
1XQQ
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BU of 1xqq by Molmil
Simultaneous determination of protein structure and dynamics
Descriptor: ubiquitin
Authors:Lindorff-Larsen, K, Best, R.B, DePristo, M.A, Vendruscolo, M, Dobson, C.M.
Deposit date:2004-10-13
Release date:2005-02-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Simultaneous determination of protein structure and dynamics
Nature, 433, 2005
1D3Z
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BU of 1d3z by Molmil
UBIQUITIN NMR STRUCTURE
Descriptor: PROTEIN (UBIQUITIN)
Authors:Cornilescu, G, Marquardt, J.L, Ottiger, M, Bax, A.
Deposit date:1999-10-01
Release date:1999-10-14
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase
J.Am.Chem.Soc., 120, 1998
1YX5
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BU of 1yx5 by Molmil
Solution Structure of S5a UIM-1/Ubiquitin Complex
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, Ubiquitin
Authors:Wang, Q, Young, P, Walters, K.J.
Deposit date:2005-02-19
Release date:2005-04-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of S5a Bound to Monoubiquitin Provides a Model for Polyubiquitin Recognition
J.Mol.Biol., 348, 2005
2MWS
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BU of 2mws by Molmil
Structure of the complex of ubiquitin and the ubiquitin-like (UBL) domain of Ddi1
Descriptor: DNA damage-inducible protein 1, Ubiquitin
Authors:Fushman, D, Nowicka, U, Walker, O.
Deposit date:2014-11-23
Release date:2015-03-25
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:DNA-Damage-Inducible 1 Protein (Ddi1) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin.
Structure, 23, 2015
2K8C
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BU of 2k8c by Molmil
Solution structure of PLAA family ubiquitin binding domain (PFUC) trans isomer in complex with ubiquitin
Descriptor: Phospholipase A-2-activating protein, Ubiquitin
Authors:Fu, Q.S, Zhou, C.J, Gao, H.C, Lin, D.H, Hu, H.Y.
Deposit date:2008-09-04
Release date:2009-05-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for Ubiquitin Recognition by a Novel Domain from Human Phospholipase A2-activating Protein.
J.Biol.Chem., 284, 2009
2K6D
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BU of 2k6d by Molmil
CIN85 Sh3-C domain in complex with ubiquitin
Descriptor: SH3 domain-containing kinase-binding protein 1, Ubiquitin
Authors:Forman-Kay, J, Bezsonova, I.
Deposit date:2008-07-07
Release date:2008-08-19
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Interactions between the three CIN85 SH3 domains and ubiquitin: implications for CIN85 ubiquitination.
Biochemistry, 47, 2008
1Q5W
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BU of 1q5w by Molmil
Ubiquitin Recognition by Npl4 Zinc-Fingers
Descriptor: Ubiquitin, ZINC ION, homolog of yeast nuclear protein localization 4
Authors:Alam, S.L, Sun, J, Payne, M, Welch, B.D, Blake, B.K, Davis, D.R, Meyer, H.H, Emr, S.D, Sundquist, W.I.
Deposit date:2003-08-11
Release date:2004-03-30
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Ubiquitin interactions of NZF zinc fingers.
Embo J., 23, 2004
2KJH
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BU of 2kjh by Molmil
NMR based structural model of the UBCH8-UBIQUITIN complex
Descriptor: Ubiquitin, Ubiquitin/ISG15-conjugating enzyme E2 L6
Authors:Serniwka, S.A, Shaw, G.S.
Deposit date:2009-05-28
Release date:2009-12-08
Last modified:2021-10-13
Method:SOLUTION NMR
Cite:The structure of the UbcH8-ubiquitin complex shows a unique ubiquitin interaction site.
Biochemistry, 48, 2009
2PEA
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BU of 2pea by Molmil
NMR Based Structure of the Closed Conformation of LYS48-Linked Di-Ubiquitin Using Experimental Global Rotational Diffusion Tensor from NMR Relaxation Measurements
Descriptor: Ubiquitin
Authors:Ryabov, Y, Fushman, D.
Deposit date:2007-04-02
Release date:2007-07-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural assembly of multidomain proteins and protein complexes guided by the overall rotational diffusion tensor.
J.Am.Chem.Soc., 129, 2007
2KDF
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BU of 2kdf by Molmil
NMR structure of minor S5a (196-306):K48 linked diubiquitin species
Descriptor: 26S proteasome non-ATPase regulatory subunit 4, Ubiquitin
Authors:Zhang, N, Wang, Q, Ehlinger, A, Randles, L, Lary, J.W, Kang, Y, Haririnia, A, Cole, J.L, Fushman, D, Walters, K.J.
Deposit date:2009-01-06
Release date:2009-09-01
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13.
Mol.Cell, 35, 2009
1G6J
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BU of 1g6j by Molmil
STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSE MICELLES
Descriptor: UBIQUITIN
Authors:Babu, C.R, Flynn, P.F, Wand, A.J.
Deposit date:2000-11-06
Release date:2001-03-28
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Validation of protein structure from preparations of encapsulated proteins dissolved in low viscosity fluids.
J.Am.Chem.Soc., 123, 2001
2K8B
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BU of 2k8b by Molmil
Solution structure of PLAA family ubiquitin binding domain (PFUC) cis isomer in complex with ubiquitin
Descriptor: Phospholipase A-2-activating protein, Ubiquitin
Authors:Fu, Q.S, Zhou, C.J, Gao, H.C, Lin, D.H, Hu, H.Y.
Deposit date:2008-09-04
Release date:2009-05-05
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for Ubiquitin Recognition by a Novel Domain from Human Phospholipase A2-activating Protein.
J.Biol.Chem., 284, 2009
1ZGU
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BU of 1zgu by Molmil
Solution structure of the human Mms2-Ubiquitin complex
Descriptor: Ubiquitin, Ubiquitin-conjugating enzyme E2 variant 2
Authors:Lewis, M.J, Saltibus, L.F, Hau, D.D, Xiao, W, Spyracopoulos, L.
Deposit date:2005-04-22
Release date:2006-04-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2.
J.Biomol.Nmr, 34, 2006

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