Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1658 件
1RBQ
DownloadVisualize
BU of 1rbq by Molmil
Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
分子名称: N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID, PHOSPHATE ION, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.104 Å)
主引用文献Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
To be Published
1RC1
DownloadVisualize
BU of 1rc1 by Molmil
Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
分子名称: N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID, PHOSPHATE ION, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Human GAR Tfase complex structure
To be Published
1TZ3
DownloadVisualize
BU of 1tz3 by Molmil
crystal structure of aminoimidazole riboside kinase complexed with aminoimidazole riboside
分子名称: 5-AMINOIMIDAZOLE RIBONUCLEOSIDE, POTASSIUM ION, putative sugar kinase
著者Zhang, Y, Dougherty, M, Downs, D.M, Ealick, S.E.
登録日2004-07-09
公開日2004-10-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of an Aminoimidazole Riboside Kinase from Salmonella enterica; Implications for the Evolution of the Ribokinase Superfamily
STRUCTURE, 12, 2004
7ST4
DownloadVisualize
BU of 7st4 by Molmil
Calcium-saturated jGCaMP8.410.80
分子名称: CALCIUM ION, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Zhang, Y, Looger, L.L.
登録日2021-11-11
公開日2022-11-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Fast and sensitive GCaMP calcium indicators for imaging neural populations
Nature, 615, 2023
1U7D
DownloadVisualize
BU of 1u7d by Molmil
crystal structure of apo M. jannashii tyrosyl-tRNA synthetase
分子名称: Tyrosyl-tRNA synthetase
著者Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A.
登録日2004-08-03
公開日2005-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.
Protein Sci., 14, 2005
1TYY
DownloadVisualize
BU of 1tyy by Molmil
Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
分子名称: POTASSIUM ION, putative sugar kinase
著者Zhang, Y, Dougherty, M, Downs, D.M, Ealick, S.E.
登録日2004-07-08
公開日2004-10-07
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal Structure of an Aminoimidazole Riboside Kinase from Salmonella enterica; Implications for the Evolution of the Ribokinase Superfamily
STRUCTURE, 12, 2004
1RC0
DownloadVisualize
BU of 1rc0 by Molmil
Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
分子名称: N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Human GAR Tfase complex structure
To be Published
1RBM
DownloadVisualize
BU of 1rbm by Molmil
Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
分子名称: N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID, PHOSPHATE ION, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Human GAR Tfase complex structure
To be Published
1RBY
DownloadVisualize
BU of 1rby by Molmil
Human GAR Tfase complex structure with 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid and substrate beta-GAR
分子名称: GLYCINAMIDE RIBONUCLEOTIDE, N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Human GAR Tfase complex structure
To be Published
1TZ6
DownloadVisualize
BU of 1tz6 by Molmil
Crystal structure of aminoimidazole riboside kinase from Salmonella enterica complexed with aminoimidazole riboside and ATP analog
分子名称: 5-AMINOIMIDAZOLE RIBONUCLEOSIDE, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Dougherty, M, Downs, D.M, Ealick, S.E.
登録日2004-07-09
公開日2004-10-12
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal Structure of an Aminoimidazole Riboside Kinase from Salmonella enterica; Implications for the Evolution of the Ribokinase Superfamily
STRUCTURE, 12, 2004
1U7X
DownloadVisualize
BU of 1u7x by Molmil
crystal structure of a mutant M. jannashii tyrosyl-tRNA synthetase specific for O-methyl-tyrosine
分子名称: POTASSIUM ION, Tyrosyl-tRNA synthetase
著者Zhang, Y, Wang, L, Schultz, P.G, Wilson, I.A.
登録日2004-08-04
公開日2005-05-24
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.
Protein Sci., 14, 2005
1RBZ
DownloadVisualize
BU of 1rbz by Molmil
Human GAR Tfase complex structure with polyglutamated 10-(trifluoroacetyl)-5,10-dideazaacyclic-5,6,7,8-tetrahydrofolic acid
分子名称: N-{4-4-(2,4-DIAMINO-6-OXO-1,6-DIHYDRO-PYRIMIDIN-5-YL)-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXY-ETHYL)-BUT-2-YL-BENZOYL}-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GAMMA-GLUTAMYL-GLUTAMIC ACID, PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
著者Zhang, Y, Desharnais, J, Boger, D.L, Wilson, I.A.
登録日2003-11-03
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Human GAR Tfase complex structure
To be Published
5GSN
DownloadVisualize
BU of 5gsn by Molmil
Tmm in complex with methimazole
分子名称: 1-METHYL-1,3-DIHYDRO-2H-IMIDAZOLE-2-THIONE, FLAVIN-ADENINE DINUCLEOTIDE, Flavin-containing monooxygenase, ...
著者Zhang, Y.Z, Li, C.Y.
登録日2016-08-16
公開日2017-01-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.203 Å)
主引用文献Structural mechanism for bacterial oxidation of oceanic trimethylamine into trimethylamine N-oxide
Mol. Microbiol., 103, 2017
5LS6
DownloadVisualize
BU of 5ls6 by Molmil
Structure of Human Polycomb Repressive Complex 2 (PRC2) with inhibitor
分子名称: 1-[(1~{R})-1-[1-[2,2-bis(fluoranyl)propyl]piperidin-4-yl]ethyl]-~{N}-[(4-methoxy-6-methyl-2-oxidanylidene-3~{H}-pyridin-3-yl)methyl]-2-methyl-indole-3-carboxamide, Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2, Jarid2 K116me3, ...
著者Zhang, Y, Justin, N, Chen, S, Wilson, J, Gamblin, S.
登録日2016-08-22
公開日2017-02-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.47 Å)
主引用文献Identification of (R)-N-((4-Methoxy-6-methyl-2-oxo-1,2-dihydropyridin-3-yl)methyl)-2-methyl-1-(1-(1-(2,2,2-trifluoroethyl)piperidin-4-yl)ethyl)-1H-indole-3-carboxamide (CPI-1205), a Potent and Selective Inhibitor of Histone Methyltransferase EZH2, Suitable for Phase I Clinical Trials for B-Cell Lymphomas.
J. Med. Chem., 59, 2016
1T8Y
DownloadVisualize
BU of 1t8y by Molmil
Crystal Structure of E.coli AMP Nucleosidase complexed with phosphate
分子名称: AMP nucleosidase, PHOSPHATE ION
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
1T8R
DownloadVisualize
BU of 1t8r by Molmil
Crystal Structure of E. coli AMP Nucleosidase
分子名称: AMP nucleosidase
著者Zhang, Y, Cottet, S.E, Ealick, S.E.
登録日2004-05-13
公開日2004-08-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of Escherichia coli AMP Nucleosidase Reveals Similarity to Nucleoside Phosphorylases
STRUCTURE, 12, 2004
3PEF
DownloadVisualize
BU of 3pef by Molmil
Crystal structure of gamma-hydroxybutyrate dehydrogenase from Geobacter metallireducens in complex with NADP+
分子名称: 1,2-ETHANEDIOL, 6-phosphogluconate dehydrogenase, NAD-binding, ...
著者Zhang, Y, Garavito, R.M.
登録日2010-10-26
公開日2011-12-07
最終更新日2016-06-01
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Structural characterization of a beta-hydroxyacid dehydrogenase from Geobacter sulfurreducens and Geobacter metallireducens with succinic semialdehyde reductase activity.
Biochimie, 104, 2014
9ATN
DownloadVisualize
BU of 9atn by Molmil
NMR structure of the MLL4 PHD2/3 fingers in complex with ASXL2
分子名称: Histone-lysine N-methyltransferase 2D, Polycomb group protein ASXL2, ZINC ION
著者Zhang, Y, Zandian, M, Kutateladze, T.
登録日2024-02-27
公開日2024-06-19
実験手法SOLUTION NMR
主引用文献ASXLs binding to the PHD2/3 fingers of MLL4 provides a mechanism for the recruitment of BAP1 to active enhancers.
Nat Commun, 15, 2024
6B4S
DownloadVisualize
BU of 6b4s by Molmil
Crystal Structure of Brazil nut (Bertholletia excelsa) allergen Ber e 2
分子名称: 11S globulin
著者Zhang, Y.Z, Guo, F.
登録日2017-09-27
公開日2018-12-12
実験手法X-RAY DIFFRACTION (2.035 Å)
主引用文献Crystal Structure of Brazil nut (Bertholletia excelsa) allergen Ber e 2
to be published
3NTP
DownloadVisualize
BU of 3ntp by Molmil
Human Pin1 complexed with reduced amide inhibitor
分子名称: (2R)-2-(acetylamino)-3-[(2S)-2-{[2-(1H-indol-3-yl)ethyl]carbamoyl}pyrrolidin-1-yl]propyl dihydrogen phosphate, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
著者Zhang, Y.
登録日2010-07-05
公開日2012-01-04
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.762 Å)
主引用文献A reduced-amide inhibitor of Pin1 binds in a conformation resembling a twisted-amide transition state.
Biochemistry, 50, 2011
6B40
DownloadVisualize
BU of 6b40 by Molmil
BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry
分子名称: 31TIR intact strand, 31TIR pre-nicked strand of flanking DNA, 31TIR pre-nicked strand of signal DNA, ...
著者Zhang, Y, Cheng, T.C, Xiong, Y, Schatz, D.G.
登録日2017-09-25
公開日2019-03-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Transposon molecular domestication and the evolution of the RAG recombinase.
Nature, 569, 2019
4OIN
DownloadVisualize
BU of 4oin by Molmil
Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077
分子名称: (2Z)-2-methylbut-2-enoic acid, 5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', ...
著者Zhang, Y, Ebright, R.H, Arnold, E.
登録日2014-01-20
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
4OIO
DownloadVisualize
BU of 4oio by Molmil
Crystal structure of Thermus thermophilus pre-insertion substrate complex for de novo transcription initiation
分子名称: 5'-D(*CP*CP*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*G)-3', 5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G)-3', 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ...
著者Zhang, Y, Ebright, R.H, Arnold, E.
登録日2014-01-20
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献GE23077 binds to the RNA polymerase 'i' and 'i+1' sites and prevents the binding of initiating nucleotides.
Elife, 3, 2014
2ABS
DownloadVisualize
BU of 2abs by Molmil
Crystal structure of T. gondii adenosine kinase complexed with AMP-PCP
分子名称: CHLORIDE ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, SODIUM ION, ...
著者Zhang, Y, el Kouni, M.H, Ealick, S.E.
登録日2005-07-16
公開日2006-01-24
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Structure of Toxoplasma gondii adenosine kinase in complex with an ATP analog at 1.1 angstroms resolution.
Acta Crystallogr.,Sect.D, 62, 2006
2A9Y
DownloadVisualize
BU of 2a9y by Molmil
Crystal structure of T. gondii adenosine kinase complexed with N6-dimethyladenosine
分子名称: 6N-DIMETHYLADENOSINE, ACETATE ION, CHLORIDE ION, ...
著者Zhang, Y, el Kouni, M.H, Ealick, S.E.
登録日2005-07-12
公開日2006-07-11
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Substrate analogs induce an intermediate conformational change in Toxoplasma gondii adenosine kinase
Acta Crystallogr.,Sect.D, 63, 2007

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon