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PDB: 116 件

1QIU
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A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for biological fibres
分子名称: ADENOVIRUS FIBRE
著者van Raaij, M.J, Lavigne, G, Mitraki, A, Cusack, S.
登録日1999-06-16
公開日1999-10-29
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein.
Nature, 401, 1999
8P8E
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Crystal structure of endolysin gp46 from Pseudomonas aeruginosa bacteriophage vB_PaeM_KTN6
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, Glycoside hydrolase family protein
著者van Raaij, M.J, Sanz-Gaitero, M.
登録日2023-06-01
公開日2024-05-08
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (1.391 Å)
主引用文献Structural and Biochemical Characterization of a New Phage-Encoded Muramidase, KTN6 Gp46.
Phage (New Rochelle), 5, 2024
5LYE
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Re-refined structure of the bacteriophage T4 short tail fibre PDB entry 1H6W containing 71 additionally identified residues
分子名称: CHLORIDE ION, Gp12, SULFATE ION
著者van Raaij, M.J, Taylor, N.M.I, Leiman, P.G.
登録日2016-09-27
公開日2018-01-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Contractile injection systems of bacteriophages and related systems.
Mol. Microbiol., 108, 2018
1COW
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BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B
分子名称: ADENOSINE-5'-DIPHOSPHATE, AUROVERTIN B, BOVINE MITOCHONDRIAL F1-ATPASE, ...
著者van Raaij, M.J, Abrahams, J.P, Leslie, A.G.W, Walker, J.E.
登録日1996-05-08
公開日1996-08-17
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The structure of bovine F1-ATPase complexed with the antibiotic inhibitor aurovertin B.
Proc.Natl.Acad.Sci.USA, 93, 1996
1F5W
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DIMERIC STRUCTURE OF THE COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR D1 DOMAIN
分子名称: COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR, SULFATE ION
著者van Raaij, M.J, Chouin, E, van der Zandt, H, Bergelson, J.M, Cusack, S.
登録日2000-06-18
公開日2000-11-08
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution.
Structure Fold.Des., 8, 2000
1EAJ
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DIMERIC STRUCTURE OF THE COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR D1 DOMAIN AT 1.35 ANGSTROM RESOLUTION
分子名称: COXSACKIE VIRUS AND ADENOVIRUS RECEPTOR, SULFATE ION
著者van Raaij, M.J, Cusack, S.
登録日2001-07-12
公開日2001-07-13
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Dimeric structure of the coxsackievirus and adenovirus receptor D1 domain at 1.7 A resolution.
Structure, 8, 2000
1QHV
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HUMAN ADENOVIRUS SEROTYPE 2 FIBRE HEAD
分子名称: PROTEIN (ADENOVIRUS FIBRE), SULFATE ION
著者Van Raaij, M.J, Louis, N, Chroboczek, J, Cusack, S.
登録日1999-05-28
公開日1999-09-29
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Structure of the human adenovirus serotype 2 fiber head domain at 1.5 A resolution.
Virology, 262, 1999
4UW7
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Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber without its intra-molecular chaperone domain
分子名称: GLYCEROL, L-SHAPED TAIL FIBER PROTEIN
著者Garcia-Doval, C, Luque, D, Caston, J.R, Otero, J.M, Llamas-Saiz, A.L, Boulanger, P, van Raaij, M.J.
登録日2014-08-08
公開日2015-08-05
最終更新日2018-01-17
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone.
Viruses, 7, 2015
4UXE
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Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, P21 selenomethionine crystal
分子名称: GLYCEROL, LARGE TAIL FIBER PROTEIN P34
著者Granell, M, Alvira, S, Garcia-Doval, C, Singh, A.K, van Raaij, M.J.
登録日2014-08-22
公開日2015-08-19
最終更新日2017-07-19
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.
Viruses, 9, 2017
4V0S
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Crystal structure of Mycobacterium tuberculosis Type II Dehydroquinase D88N mutant inhibited by a 3-dehydroquinic acid derivative
分子名称: (1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3,4-DIHYDROXY-2-[(2,3,4,5,6-PENTAFLUOROPHENYL)METHYL]BENZOIC ACID, 3-DEHYDROQUINATE DEHYDRATASE, ...
著者Otero, J.M, Llamas-Saiz, A.L, Santiago, C, Lamb, H, Hawkins, A.R, Maneiro, M, Peon, A, Gonzalez-Bello, C, van Raaij, M.J.
登録日2014-09-18
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Investigation of the Dehydratation Mechanism Catalyzed by the Type II Dehydroquinase
To be Published
7QXC
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Recognition of Staphylococcus aureus wall teichoic acid analogue SA533 (compound 1) by Fab4461
分子名称: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid, DI(HYDROXYETHYL)ETHER, Fab 4461 heavy chain, ...
著者Soriano-Maldonado, P, van Raaij, M.J.
登録日2022-01-26
公開日2022-08-31
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.452 Å)
主引用文献Antibody Recognition of Different Staphylococcus aureus Wall Teichoic Acid Glycoforms.
Acs Cent.Sci., 8, 2022
7QXE
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Recognition of Staphylococcus aureus wall teichoic acid analogue TB87 (compound 3) by Fab4497
分子名称: Antibody 4497 light chain, Antibody Fab 4497 heavy chain, CHLORIDE ION, ...
著者Soriano-Maldonado, P, van Raaij, M.J.
登録日2022-01-26
公開日2022-08-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Antibody Recognition of Different Staphylococcus aureus Wall Teichoic Acid Glycoforms.
Acs Cent.Sci., 8, 2022
7QXD
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Recognition of Staphylococcus aureus wall teichoic acid analogue SA475 (compound 2) by Fab4497
分子名称: Antibody Fab 4497 heavy chain, Antibody Fab 4497 light chain, DI(HYDROXYETHYL)ETHER, ...
著者Soriano-Maldonado, P, van Raaij, M.J.
登録日2022-01-26
公開日2022-08-31
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Antibody Recognition of Different Staphylococcus aureus Wall Teichoic Acid Glycoforms.
Acs Cent.Sci., 8, 2022
4UXG
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Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, R32 native crystal
分子名称: LARGE TAIL FIBER PROTEIN P34
著者Granell, M, Alvira, S, Garcia-Doval, C, Singh, A.K, van Raaij, M.J.
登録日2014-08-22
公開日2015-09-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.
Viruses, 9, 2017
4UXF
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Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, P21 native crystal
分子名称: GLYCEROL, LARGE TAIL FIBER PROTEIN P34
著者Granell, M, Alvira, S, Garcia-Doval, C, Singh, A.K, van Raaij, M.J.
登録日2014-08-22
公開日2015-12-16
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.
Viruses, 9, 2017
7Q4T
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Structure of the Pseudomonas aeruginosa bacteriophage JG004 endolysin Pae87 bound to a peptidoglycan fragment.
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid, ALA-DGL, ...
著者Seoane-Blanco, M, van Raaij, M.J.
登録日2021-11-02
公開日2022-02-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.27 Å)
主引用文献Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain.
Acta Crystallogr D Struct Biol, 78, 2022
7Q4S
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Structure of the Pseudomonas aeruginosa bacteriophage JG004 endolysin Pae87, apo form.
分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Endolysin, TETRAETHYLENE GLYCOL
著者Seoane-Blanco, M, van Raaij, M.J.
登録日2021-11-02
公開日2022-02-23
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Monomodular Pseudomonas aeruginosa phage JG004 lysozyme (Pae87) contains a bacterial surface-active antimicrobial peptide-like region and a possible substrate-binding subdomain.
Acta Crystallogr D Struct Biol, 78, 2022
4UMI
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Crystal structure of the fiber head domain of the Atadenovirus snake adenovirus 1, native, F23 crystal form
分子名称: FIBER PROTEIN
著者Singh, A.K, van Raaij, M.J.
登録日2014-05-17
公開日2014-12-17
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Crystal structure of the fibre head domain of the Atadenovirus Snake Adenovirus 1.
PLoS ONE, 9, 2014
4UW8
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Structure of the carboxy-terminal domain of the bacteriophage T5 L- shaped tail fiber with its intra-molecular chaperone domain
分子名称: CITRATE ANION, L-SHAPED TAIL FIBER PROTEIN
著者Garcia-Doval, C, Luque, D, Caston, J.R, Otero, J.M, Llamas-Saiz, A.L, Boulanger, P, van Raaij, M.J.
登録日2014-08-08
公開日2015-08-05
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.52 Å)
主引用文献Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone.
Viruses, 7, 2015
5AQ5
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Structure of the Carboxy-Terminal Domain of the Bacteriophage T5 L- Shaped Tail Fibre
分子名称: L-SHAPED TAIL FIBER PROTEIN PB8
著者Garcia-Doval, C, Granell, M, van Raaij, M.J.
登録日2015-09-19
公開日2015-12-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Receptor-Binding Carboxy-Terminal Domain of the Bacteriophage T5 L-Shaped Tail Fibre with and without Its Intra-Molecular Chaperone.
Viruses, 7, 2015
1V1I
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Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a long linker
分子名称: FIBRITIN, FIBER PROTEIN
著者Papanikolopoulou, K, Teixeira, S, Belrhali, H, Forsyth, V.T, Mitraki, A, van Raaij, M.J.
登録日2004-04-16
公開日2004-07-30
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Adenovirus Fibre Shaft Sequences Fold Into the Native Triple Beta-Spiral Fold When N-Terminally Fused to the Bacteriophage T4 Fibritin Foldon Trimerisation Motif
J.Mol.Biol., 342, 2004
1V1H
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Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a short linker
分子名称: FIBRITIN, FIBER PROTEIN
著者Papanikolopoulou, K, Teixeira, S, Belrhali, H, Forsyth, V.T, Mitraki, A, van Raaij, M.J.
登録日2004-04-16
公開日2004-07-30
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Adenovirus Fibre Shaft Sequences Fold Into the Native Triple Beta-Spiral Fold When N-Terminally Fused to the Bacteriophage T4 Fibritin Foldon Trimerisation Motif
J.Mol.Biol., 342, 2004
4UE0
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Structure of the bovine atadenovirus type 4 fibre head protein
分子名称: CARBONATE ION, FIBER, THIOCYANATE ION
著者Nguyen, T.H, van Raaij, M.J.
登録日2014-12-14
公開日2015-06-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus.
Virol. J., 12, 2015
4UIO
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Structure of the Salmonella typhi Type I Dehydroquinase covalently inhibited by a 3-dehydroquinic acid derivative
分子名称: (1~{R},3~{R},4~{S},5~{R})-3-methyl-1,3,4,5-tetrakis(oxidanyl)cyclohexane-1-carboxylic acid, 3-DEHYDROQUINATE DEHYDRATASE, CHLORIDE ION, ...
著者Otero, J.M, Llamas-Saiz, A.L, Tizon, L, Lence, E, Thompson, P, Hawkins, A.R, Gonzalez-Bello, C, van Raaij, M.J.
登録日2015-03-30
公開日2015-07-15
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Chemical Modification of a Dehydratase Enzyme Involved in Bacterial Virulence by an Ammonium Derivative: Evidence of its Active Site Covalent Adduct.
J.Am.Chem.Soc., 137, 2015
1EFR
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BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
分子名称: ADENOSINE-5'-DIPHOSPHATE, BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA, BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA, ...
著者Abrahams, J.P, Buchanan, S.K, Van Raaij, M.J, Fearnley, I.M, Leslie, A.G.W, Walker, J.E.
登録日1996-05-24
公開日1997-02-12
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The Structure of Bovine F1-ATPase Complexed with the Peptide Antibiotic Efrapeptin.
Proc.Natl.Acad.Sci.USA, 93, 1996

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