Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 250 件

7FB3
DownloadVisualize
BU of 7fb3 by Molmil
SARS-CoV-2 spike protein in one-RBD weak state after CTSL-treatment
分子名称: Spike glycoprotein
著者Zhu, Y, Tai, L.H, Sun, F.
登録日2021-07-08
公開日2022-07-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Novel sites for Cathepsin L cleavage in SARS-CoV-2 spike guide treatment strategies
To Be Published
7FB0
DownloadVisualize
BU of 7fb0 by Molmil
SARS-CoV-2 spike protein in closed state
分子名称: Spike glycoprotein
著者Zhu, Y, Tai, L.H, Sun, F.
登録日2021-07-08
公開日2022-07-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Novel sites for Cathepsin L cleavage in SARS-CoV-2 spike guide treatment strategies
To Be Published
7FB4
DownloadVisualize
BU of 7fb4 by Molmil
SARS-CoV-2 spike protein in two-RBD weak state after CTSL-treatment
分子名称: Spike glycoprotein
著者Zhu, Y, Tai, L.H, Sun, F.
登録日2021-07-08
公開日2022-07-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Novel sites for Cathepsin L cleavage in SARS-CoV-2 spike guide treatment strategies
To Be Published
1G9I
DownloadVisualize
BU of 1g9i by Molmil
CRYSTAL STRUCTURE OF BETA-TRYSIN COMPLEX IN CYCLOHEXANE
分子名称: BOWMAN-BIRK TYPE TRYPSIN INHIBITOR, CALCIUM ION, SULFATE ION, ...
著者Zhu, G, Huang, Q, Zhu, Y, Li, Y, Chi, C, Tang, Y.
登録日2000-11-24
公開日2000-12-06
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献X-Ray study on an artificial mung bean inhibitor complex with bovine beta-trypsin in neat cyclohexane.
Biochim.Biophys.Acta, 1546, 2001
4F7H
DownloadVisualize
BU of 4f7h by Molmil
The crystal structure of kindlin-2 pleckstrin homology domain in free form
分子名称: Fermitin family homolog 2, S,R MESO-TARTARIC ACID
著者Liu, Y, Zhu, Y, Qin, J, Ye, S, Zhang, R.
登録日2012-05-16
公開日2012-06-13
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of kindlin-2 PH domain reveals a conformational transition for its membrane anchoring and regulation of integrin activation.
Protein Cell, 3, 2012
4FMD
DownloadVisualize
BU of 4fmd by Molmil
EspG-Rab1 complex structure at 3.05 A
分子名称: ALUMINUM FLUORIDE, DI(HYDROXYETHYL)ETHER, EspG protein, ...
著者Shao, F, Zhu, Y.
登録日2012-06-16
公開日2012-09-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Structurally Distinct Bacterial TBC-like GAPs Link Arf GTPase to Rab1 Inactivation to Counteract Host Defenses.
Cell(Cambridge,Mass.), 150, 2012
4FMC
DownloadVisualize
BU of 4fmc by Molmil
EspG-Rab1 complex
分子名称: ALUMINUM FLUORIDE, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Shao, F, Zhu, Y.
登録日2012-06-16
公開日2012-09-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structurally Distinct Bacterial TBC-like GAPs Link Arf GTPase to Rab1 Inactivation to Counteract Host Defenses.
Cell(Cambridge,Mass.), 150, 2012
4FME
DownloadVisualize
BU of 4fme by Molmil
EspG-Rab1-Arf6 complex
分子名称: ADP-ribosylation factor 6, ALUMINUM FLUORIDE, EspG protein, ...
著者Shao, F, Zhu, Y.
登録日2012-06-16
公開日2012-09-05
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (4.1 Å)
主引用文献Structurally Distinct Bacterial TBC-like GAPs Link Arf GTPase to Rab1 Inactivation to Counteract Host Defenses.
Cell(Cambridge,Mass.), 150, 2012
8WR2
DownloadVisualize
BU of 8wr2 by Molmil
Crystal Structure of Human Pyridoxal Kinase with bound Luteolin
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, DIMETHYL SULFOXIDE, ...
著者Fan, J, Zhu, Y.
登録日2023-10-12
公開日2024-03-20
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Discovery and characterization of natural product luteolin as an effective inhibitor of human pyridoxal kinase.
Bioorg.Chem., 143, 2024
7ZBT
DownloadVisualize
BU of 7zbt by Molmil
Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes
分子名称: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit
著者Ni, T, Zhu, Y, Yu, X, Sun, Y, Liu, L, Zhang, P.
登録日2022-03-24
公開日2022-07-20
最終更新日2023-01-18
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and assembly of cargo Rubisco in two native alpha-carboxysomes.
Nat Commun, 13, 2022
5XNB
DownloadVisualize
BU of 5xnb by Molmil
Crystal structure of the IcmS-IcmW-DotL complex of the Legionella type IVb secretion system
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DotL, IcmS protein, ...
著者Xu, J, Xu, D, Zhu, Y.
登録日2017-05-19
公開日2017-09-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.594 Å)
主引用文献Crystal Structure of The IcmS-IcmW Complex in the Legionella Type IVb Secretion System
To Be Published
7ZC1
DownloadVisualize
BU of 7zc1 by Molmil
Subtomogram averaging of Rubisco from Cyanobium carboxysome
分子名称: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase, small subunit
著者Ni, T, Zhu, Y, Seaton-Burn, W, Zhang, P.
登録日2022-03-25
公開日2022-07-06
最終更新日2023-01-18
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structure and assembly of cargo Rubisco in two native alpha-carboxysomes.
Nat Commun, 13, 2022
8HTD
DownloadVisualize
BU of 8htd by Molmil
Crystal structure of an effector from Chromobacterium violaceum in complex with ubiquitin
分子名称: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin
著者Tan, J, Wang, X, Zhou, Y, Zhu, Y.
登録日2022-12-21
公開日2023-11-22
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (1.848 Å)
主引用文献Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTE
DownloadVisualize
BU of 8hte by Molmil
Crystal structure of an effector mutant in complex with ubiquitin
分子名称: GLYCEROL, NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE, ...
著者Tan, J, Wang, X, Zhou, Y, Zhu, Y.
登録日2022-12-21
公開日2023-11-22
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.307 Å)
主引用文献Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTF
DownloadVisualize
BU of 8htf by Molmil
Crystal structure of an effector in complex with ubiquitin
分子名称: NAD(+)--protein-threonine ADP-ribosyltransferase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Ubiquitin-40S ribosomal protein S27a (Fragment)
著者Tan, J, Wang, X, Zhou, Y, Zhu, Y.
登録日2022-12-21
公開日2023-11-22
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.151 Å)
主引用文献Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
8HTC
DownloadVisualize
BU of 8htc by Molmil
Crystal structure of a SeMet-labeled effector from Chromobacterium violaceum in complex with Ubiquitin
分子名称: NAD(+)--protein-threonine ADP-ribosyltransferase, Ubiquitin-40S ribosomal protein S27a (Fragment)
著者Tan, J, Wang, X, Zhou, Y, Zhu, Y.
登録日2022-12-21
公開日2023-11-22
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Molecular basis of threonine ADP-ribosylation of ubiquitin by bacterial ARTs.
Nat.Chem.Biol., 20, 2024
4NFZ
DownloadVisualize
BU of 4nfz by Molmil
Crystal structure of polymerase subunit PA N-terminal endonuclease domain from bat-derived influenza virus H17N10
分子名称: MANGANESE (II) ION, Polymerase PA
著者Tefsen, B, Lu, G, Zhu, Y, Haywood, J, Zhao, L, Deng, T, Qi, J, Gao, G.F.
登録日2013-11-01
公開日2013-12-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The N-Terminal Domain of PA from Bat-Derived Influenza-Like Virus H17N10 Has Endonuclease Activity
J.Virol., 88, 2014
8VQM
DownloadVisualize
BU of 8vqm by Molmil
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6R prime
分子名称: (S~1~S,3R)-N-{3,5-dichloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-3-(dimethylamino)pyrrolidine-1-sulfonimidoyl fluoride, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Lin, T.H, Zhu, Y, Wilson, I.A.
登録日2024-01-18
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Ultrapotent influenza hemagglutinin fusion inhibitors developed through SuFEx-enabled high-throughput medicinal chemistry.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VQN
DownloadVisualize
BU of 8vqn by Molmil
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6R
分子名称: (S~1~S,3R)-N-{3-chloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-3-(dimethylamino)pyrrolidine-1-sulfonimidoyl fluoride, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
著者Lin, T.H, Zhu, Y, Wilson, I.A.
登録日2024-01-18
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献Ultrapotent influenza hemagglutinin fusion inhibitors developed through SuFEx-enabled high-throughput medicinal chemistry.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VQQ
DownloadVisualize
BU of 8vqq by Molmil
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6S
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, Hemagglutinin HA2 chain, ...
著者Lin, T.H, Zhu, Y, Wilson, I.A.
登録日2024-01-19
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Ultrapotent influenza hemagglutinin fusion inhibitors developed through SuFEx-enabled high-throughput medicinal chemistry.
Proc.Natl.Acad.Sci.USA, 121, 2024
8VQL
DownloadVisualize
BU of 8vql by Molmil
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with small molecule 6S prime
分子名称: (S~1~S,3S)-N-{3,5-dichloro-4-[(2S)-2-phenylmorpholine-4-carbonyl]phenyl}-3-(dimethylamino)pyrrolidine-1-sulfonimidoyl fluoride, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Lin, T.H, Zhu, Y, Wilson, I.A.
登録日2024-01-18
公開日2024-06-05
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Ultrapotent influenza hemagglutinin fusion inhibitors developed through SuFEx-enabled high-throughput medicinal chemistry.
Proc.Natl.Acad.Sci.USA, 121, 2024
5XBL
DownloadVisualize
BU of 5xbl by Molmil
Structure of nuclease in complex with associated protein
分子名称: Associated protein, CRISPR-associated endonuclease Cas9/Csn1, RNA (98-MER)
著者Dong, D, Guo, M, Wang, S, Zhu, Y, Huang, Z.
登録日2017-03-20
公開日2017-06-14
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (3.052 Å)
主引用文献Structural basis of CRISPR-SpyCas9 inhibition by an anti-CRISPR protein
Nature, 546, 2017
4UTF
DownloadVisualize
BU of 4utf by Molmil
Structure of the GH99 endo-alpha-mannosidase from Bacteroides xylanisolvens in complex with mannose-alpha-1,3-isofagomine and alpha- 1,2-mannobiose
分子名称: 1,2-ETHANEDIOL, 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE, GLYCOSYL HYDROLASE FAMILY 71, ...
著者Cuskin, F, Lowe, E.C, Temple, M.J, Zhu, Y, Pudlo, N.A, Cameron, E.A, Urs, K, Thompson, A.J, Cartmell, A, Rogowski, A, Tolbert, T, Piens, K, Bracke, D, Vervecken, W, Hakki, Z, Speciale, G, Munoz-Munoz, J.L, Pena, M.J, McLean, R, Suits, M.D, Boraston, A.B, Atherly, T, Ziemer, C.J, Williams, S.J, Davies, G.J, Abbott, D.W, Martens, E.C, Gilbert, H.J.
登録日2014-07-21
公開日2014-12-24
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Human Gut Bacteroidetes Can Utilize Yeast Mannan Through a Selfish Mechanism.
Nature, 517, 2015
6UI4
DownloadVisualize
BU of 6ui4 by Molmil
Crystal structure of phenamacril-bound F. graminearum myosin I
分子名称: Calmodulin, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Zhou, Y, Zhou, X.E, Gong, Y, Zhu, Y, Xu, H.E, Zhou, M, Melcher, K, Zhang, F.
登録日2019-09-30
公開日2020-03-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural basis of Fusarium myosin I inhibition by phenamacril.
Plos Pathog., 16, 2020
4EAY
DownloadVisualize
BU of 4eay by Molmil
Crystal structures of mannonate dehydratase from Escherichia coli strain K12 complexed with D-mannonate
分子名称: CHLORIDE ION, D-MANNONIC ACID, MANGANESE (II) ION, ...
著者Qiu, X, Zhu, Y, Yuan, Y, Zhang, Y, Liu, H, Gao, Y, Teng, M, Niu, L.
登録日2012-03-23
公開日2013-03-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural insights into decreased enzymatic activity induced by an insert sequence in mannonate dehydratase from Gram negative bacterium.
J.Struct.Biol., 180, 2012

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon