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PDB: 309 results

7VOP
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Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit
Descriptor: GATOR complex protein SEC13, IL4I1 protein, MGC154553 protein, ...
Authors:Tai, L, Zhu, Y, Sun, F.
Deposit date:2021-10-14
Release date:2022-02-02
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (8.7 Å)
Cite:8 angstrom structure of the outer rings of the Xenopus laevis nuclear pore complex obtained by cryo-EM and AI.
Protein Cell, 13, 2022
7VCI
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BU of 7vci by Molmil
Structure of Xenopus laevis NPC nuclear ring asymmetric unit
Descriptor: GATOR complex protein SEC13, MGC154553 protein, MGC83295 protein, ...
Authors:Tai, L, Zhu, Y, Sun, F.
Deposit date:2021-09-03
Release date:2022-02-02
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (8.1 Å)
Cite:8 angstrom structure of the outer rings of the Xenopus laevis nuclear pore complex obtained by cryo-EM and AI.
Protein Cell, 13, 2022
7WLY
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BU of 7wly by Molmil
Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down- and 2 up RBDs)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, ...
Authors:Wang, X, Zhu, Y.
Deposit date:2022-01-14
Release date:2022-05-25
Last modified:2022-06-22
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:35B5 antibody potently neutralizes SARS-CoV-2 Omicron by disrupting the N-glycan switch via a conserved spike epitope.
Cell Host Microbe, 30, 2022
7WLZ
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Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down-, 1 up- and 1 invisible RBDs)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of 35B5 Fab, Light chain of 35B5 Fab, ...
Authors:Wang, X, Zhu, Y.
Deposit date:2022-01-14
Release date:2022-05-25
Last modified:2022-06-22
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:35B5 antibody potently neutralizes SARS-CoV-2 Omicron by disrupting the N-glycan switch via a conserved spike epitope.
Cell Host Microbe, 30, 2022
6AEG
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BU of 6aeg by Molmil
Crystal structure of xCas9 in complex with sgRNA and target DNA (GAT PAM)
Descriptor: DNA (25-MER), DNA (5'-D(*AP*AP*AP*GP*AP*TP*TP*AP*TP*TP*G)-3'), DNA nuclease, ...
Authors:Guo, M, Ren, K, Zhu, Y, Huang, Z.
Deposit date:2018-08-04
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Structural insights into a high fidelity variant of SpCas9.
Cell Res., 29, 2019
6AEB
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BU of 6aeb by Molmil
Crystal structure of xCas9 in complex with sgRNA and target DNA (AAG PAM)
Descriptor: DNA (25-MER), DNA (5'-D(*AP*AP*AP*AP*AP*GP*TP*AP*TP*TP*G)-3'), DNA Nuclease, ...
Authors:Guo, M, Ren, K, Zhu, Y, Huang, Z.
Deposit date:2018-08-04
Release date:2019-03-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:Structural insights into a high fidelity variant of SpCas9.
Cell Res., 29, 2019
7ZBT
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BU of 7zbt by Molmil
Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes
Descriptor: Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small subunit
Authors:Ni, T, Zhu, Y, Yu, X, Sun, Y, Liu, L, Zhang, P.
Deposit date:2022-03-24
Release date:2022-07-20
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and assembly of cargo Rubisco in two native alpha-carboxysomes.
Nat Commun, 13, 2022
7Y04
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BU of 7y04 by Molmil
Hsp90-AhR-p23 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Aryl hydrocarbon receptor, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Wen, Z.L, Zhai, Y.J, Zhu, Y, Sun, F.
Deposit date:2022-06-03
Release date:2023-01-04
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of the cytosolic AhR complex.
Structure, 31, 2023
5XBL
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BU of 5xbl by Molmil
Structure of nuclease in complex with associated protein
Descriptor: Associated protein, CRISPR-associated endonuclease Cas9/Csn1, RNA (98-MER)
Authors:Dong, D, Guo, M, Wang, S, Zhu, Y, Huang, Z.
Deposit date:2017-03-20
Release date:2017-06-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3.052 Å)
Cite:Structural basis of CRISPR-SpyCas9 inhibition by an anti-CRISPR protein
Nature, 546, 2017
5XLX
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BU of 5xlx by Molmil
Crystal structure of the C-terminal domain of CheR1 containing SAH
Descriptor: Chemotaxis protein methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Yuan, Z, Zhu, Y, Gu, L.
Deposit date:2017-05-12
Release date:2017-08-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Structural basis for the regulation of chemotaxis by MapZ in the presence of c-di-GMP
Acta Crystallogr D Struct Biol, 73, 2017
5XLY
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BU of 5xly by Molmil
Crystal structure of CheR1 in complex with c-di-GMP-bound MapZ
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Chemotaxis protein methyltransferase 1, Cyclic diguanosine monophosphate-binding protein PA4608
Authors:Yuan, Z, Zhu, Y, Gu, L.
Deposit date:2017-05-12
Release date:2017-08-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.763 Å)
Cite:Structural basis for the regulation of chemotaxis by MapZ in the presence of c-di-GMP
Acta Crystallogr D Struct Biol, 73, 2017
5XN7
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BU of 5xn7 by Molmil
Crystal structure of the effector domain RID of Vibrio vulnificus MARTX toxin
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Yin, L, Zhu, Y.
Deposit date:2017-05-18
Release date:2017-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a MARTX toxin effector domain
To Be Published
5WTI
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BU of 5wti by Molmil
Crystal structure of the CRISPR-associated protein in complex with crRNA and DNA
Descriptor: CRISPR-associated protein, DNA (28-MER), DNA (5'-D(P*GP*TP*GP*TP*GP*GP*AP*TP*TP*CP*CP*G)-3'), ...
Authors:Wu, D, Guan, X, Zhu, Y, Huang, Z.
Deposit date:2016-12-13
Release date:2017-11-01
Method:X-RAY DIFFRACTION (2.682 Å)
Cite:Structural basis of stringent PAM recognition by CRISPR-C2c1 in complex with sgRNA
Cell Res., 27, 2017
5Y8E
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BU of 5y8e by Molmil
Crystal Structure of a prokaryotic SEFIR domain
Descriptor: Sefir domain protein
Authors:Zhang, R, Ye, S, Zhu, Y, Yang, H.
Deposit date:2017-08-21
Release date:2018-04-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:Structure of a prokaryotic SEFIR domain reveals two novel SEFIR-SEFIR interaction modes.
J. Struct. Biol., 203, 2018
5YHU
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BU of 5yhu by Molmil
Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
Descriptor: Myelin regulatory factor
Authors:Chen, B, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2017-09-30
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
5Y8F
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BU of 5y8f by Molmil
Crystal Structure of a prokaryotic SEFIR domain
Descriptor: Sefir domain protein
Authors:Zhang, R, Ye, S, Zhu, Y, Yang, H.
Deposit date:2017-08-21
Release date:2018-04-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a prokaryotic SEFIR domain reveals two novel SEFIR-SEFIR interaction modes.
J. Struct. Biol., 203, 2018
6JJ7
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BU of 6jj7 by Molmil
Crystal structure of OsHXK6-Glc complex
Descriptor: Rice hexokinase 6, beta-D-glucopyranose
Authors:He, C, Wei, P, Chen, J, Wang, H, Wan, Y, Zhou, J, Zhu, Y, Huang, W, Yin, L.
Deposit date:2019-02-25
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of OsHXK6-Glc complex
To Be Published
6JJ4
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BU of 6jj4 by Molmil
Crystal structure of OsHXK6-apo form
Descriptor: Hexokinase-6
Authors:He, C, Wei, P, Chen, J, Wang, H, Wan, Y, Zhou, J, Zhu, Y, Huang, W, Yin, L.
Deposit date:2019-02-25
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of OsHXK6-apo
To Be Published
6JJ9
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BU of 6jj9 by Molmil
Crystal structure of OsHXK6-Glc-ATP-Mg2+ complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Hexokinase-6, MAGNESIUM ION, ...
Authors:He, C, Wei, P, Chen, J, Wang, H, Wan, Y, Zhou, J, Zhu, Y, Huang, W, Yin, L.
Deposit date:2019-02-25
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of OsHXK6-Glc-ATP-Mg2+ complex
To Be Published
6JXR
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BU of 6jxr by Molmil
Structure of human T cell receptor-CD3 complex
Descriptor: T cell receptor alpha variable 12-3,Possible J 11 gene segment,T cell receptor alpha constant, T cell receptor beta variable 6-5,M1-specific T cell receptor beta chain,T cell receptor beta constant 2, T-cell surface glycoprotein CD3 delta chain, ...
Authors:Dong, D, Zheng, L, Lin, J, Zhu, Y, Li, N, Zhang, B, Xie, S, Zheng, J, Wang, Y, Gao, N, Huang, Z.
Deposit date:2019-04-24
Release date:2019-09-11
Last modified:2020-09-16
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structural basis of assembly of the human T cell receptor-CD3 complex.
Nature, 573, 2019
6K2U
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BU of 6k2u by Molmil
Crystal structure of Thr66 ADP-ribosylated ubiquitin
Descriptor: ADENOSINE-5-DIPHOSPHORIBOSE, MAGNESIUM ION, Polyubiquitin-C, ...
Authors:Wang, X, Zhou, Y, Zhu, Y.
Deposit date:2019-05-15
Release date:2020-03-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.554 Å)
Cite:Threonine ADP-Ribosylation of Ubiquitin by a Bacterial Effector Family Blocks Host Ubiquitination.
Mol.Cell, 78, 2020
6A0A
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BU of 6a0a by Molmil
Structure of a triple-helix region of human collagen type III
Descriptor: collagen type III peptide
Authors:Yang, X, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2018-06-05
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Characterization by high-resolution crystal structure analysis of a triple-helix region of human collagen type III with potent cell adhesion activity.
Biochem. Biophys. Res. Commun., 508, 2019
6A0C
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BU of 6a0c by Molmil
Structure of a triple-helix region of human collagen type III
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, collagen type III peptide
Authors:Yang, X, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2018-06-05
Release date:2018-12-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Characterization by high-resolution crystal structure analysis of a triple-helix region of human collagen type III with potent cell adhesion activity.
Biochem. Biophys. Res. Commun., 508, 2019
5ZHU
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BU of 5zhu by Molmil
Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor
Descriptor: Myelin regulatory factor
Authors:Chen, B, Zhu, Y, Ye, S, Zhang, R.
Deposit date:2018-03-13
Release date:2018-05-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode.
J. Struct. Biol., 203, 2018
6JJ8
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BU of 6jj8 by Molmil
Crystal structure of OsHXK6-ATP-Mg2+ complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:He, C, Wei, P, Chen, J, Wang, H, Wan, Y, Zhou, J, Zhu, Y, Huang, W, Yin, L.
Deposit date:2019-02-25
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of OsHXK6-ATP-Mg2+ complex
To Be Published

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