Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 1282 件

6LN5
DownloadVisualize
BU of 6ln5 by Molmil
CryoEM structure of SERCA2b T1032stop in E1-2Ca2+-AMPPCP (class1)
分子名称: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-28
公開日2020-08-26
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LN9
DownloadVisualize
BU of 6ln9 by Molmil
CryoEM structure of SERCA2b T1032stop in E2-BeF3- state (class2)
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-28
公開日2020-08-26
最終更新日2020-09-16
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LN7
DownloadVisualize
BU of 6ln7 by Molmil
CryoEM structure of SERCA2b T1032stop in E1-2Ca2+-AMPPCP (class3)
分子名称: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-28
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LN8
DownloadVisualize
BU of 6ln8 by Molmil
CryoEM structure of SERCA2b T1032stop in E2-BeF3- state (class1)
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-28
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LLE
DownloadVisualize
BU of 6lle by Molmil
CryoEM structure of SERCA2b WT in E1-2Ca2+-AMPPCP state.
分子名称: CALCIUM ION, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-23
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
6LLY
DownloadVisualize
BU of 6lly by Molmil
CryoEM structure of SERCA2b WT in E2-BeF3- state
分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 2
著者Zhang, Y, Tsutsumi, A, Watanabe, S, Inaba, K.
登録日2019-12-24
公開日2020-08-26
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Cryo-EM structures of SERCA2b reveal the mechanism of regulation by the luminal extension tail.
Sci Adv, 6, 2020
7TXL
DownloadVisualize
BU of 7txl by Molmil
Crystal structure of EgtU solute binding domain from Streptococcus pneumoniae D39 in complex with L-ergothioneine
分子名称: 1,2-ETHANEDIOL, Choline transporter (Glycine betaine transport system permease protein), trimethyl-[(2S)-1-oxidanyl-1-oxidanylidene-3-(2-sulfanylidene-1,3-dihydroimidazol-4-yl)propan-2-yl]azanium
著者Zhang, Y, Gonzalez-Gutierrez, G, Giedroc, D.P.
登録日2022-02-09
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.44 Å)
主引用文献Discovery and structure of a widespread bacterial ABC transporter specific for ergothioneine.
Nat Commun, 13, 2022
7TXK
DownloadVisualize
BU of 7txk by Molmil
Crystal structure of EgtU solute binding domain from Streptococcus pneumoniae D39 in complex with L-ergothioneine
分子名称: 1,2-ETHANEDIOL, Choline transporter (Glycine betaine transport system permease protein), SULFATE ION, ...
著者Zhang, Y, Gonzalez-Gutierrez, G, Giedroc, D.P.
登録日2022-02-09
公開日2022-12-21
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Discovery and structure of a widespread bacterial ABC transporter specific for ergothioneine.
Nat Commun, 13, 2022
7KHK
DownloadVisualize
BU of 7khk by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX9486 (bezuclastinib) in the DFG-in state
分子名称: 4,5-dimethyl-N-(2-phenyl-1H-pyrrolo[2,3-b]pyridin-5-yl)-1H-pyrazole-3-carboxamide, Mast/stem cell growth factor receptor Kit
著者Zhang, Y.
登録日2020-10-21
公開日2021-07-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
7KHJ
DownloadVisualize
BU of 7khj by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX8512 in the DFG-in state
分子名称: 2-phenyl-5-(1H-pyrazol-4-yl)-1H-pyrrolo[2,3-b]pyridine, Mast/stem cell growth factor receptor Kit
著者Zhang, Y.
登録日2020-10-21
公開日2021-07-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
7KHG
DownloadVisualize
BU of 7khg by Molmil
Crystal structure of KIT kinase domain with a small molecule inhibitor, PLX3397
分子名称: 5-[(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)methyl]-N-{[6-(trifluoromethyl)pyridin-3-yl]methyl}pyridin-2-amine, Mast/stem cell growth factor receptor Kit
著者Zhang, Y.
登録日2020-10-21
公開日2021-07-07
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Association of Combination of Conformation-Specific KIT Inhibitors With Clinical Benefit in Patients With Refractory Gastrointestinal Stromal Tumors: A Phase 1b/2a Nonrandomized Clinical Trial.
Jama Oncol, 7, 2021
8J0T
DownloadVisualize
BU of 8j0t by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in the apo-form
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-04-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8JR0
DownloadVisualize
BU of 8jr0 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in complex with TBAJ-587
分子名称: (1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-06-15
公開日2024-05-01
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8J57
DownloadVisualize
BU of 8j57 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with bedaquiline(BDQ)
分子名称: ATP synthase subunit a, ATP synthase subunit c, Bedaquiline
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-04-21
公開日2024-05-01
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8J58
DownloadVisualize
BU of 8j58 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in the apo-form
分子名称: ATP synthase subunit a, ATP synthase subunit c
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-04-21
公開日2024-05-01
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8JR1
DownloadVisualize
BU of 8jr1 by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase Fo in complex with TBAJ-587
分子名称: (1~{S},2~{S})-1-(6-bromanyl-2-methoxy-quinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2-fluoranyl-3-methoxy-phenyl)butan-2-ol, ATP synthase subunit a, ATP synthase subunit c
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-06-15
公開日2024-05-01
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8J0S
DownloadVisualize
BU of 8j0s by Molmil
Cryo-EM structure of Mycobacterium tuberculosis ATP synthase in complex with bedaquiline(BDQ)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ...
著者Zhang, Y, Lai, Y, Liu, F, Rao, Z, Gong, H.
登録日2023-04-11
公開日2024-05-22
実験手法ELECTRON MICROSCOPY (2.58 Å)
主引用文献Structure of Mycobacterium tuberculosis ATP synthase
To Be Published
8JY0
DownloadVisualize
BU of 8jy0 by Molmil
Crystal structure of RhoBAST complexed with TMR-DN
分子名称: 2,4-dinitroaniline, 5-aminocarbonyl-2-[3-(dimethylamino)-6-dimethylazaniumylidene-xanthen-9-yl]benzoate, GUANOSINE-5'-DIPHOSPHATE, ...
著者Zhang, Y, Xiao, Y, Xu, Z, Fang, X.
登録日2023-07-02
公開日2024-05-29
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural mechanisms for binding and activation of a contact-quenched fluorophore by RhoBAST.
Nat Commun, 15, 2024
7WHM
DownloadVisualize
BU of 7whm by Molmil
Closed spike of Bombyx mori cytoplasmic polyhedrosis virus
分子名称: PPPDE domain-containing protein
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WHN
DownloadVisualize
BU of 7whn by Molmil
Opened spike of Bombyx mori cytoplasmic polyhedrosis virus
分子名称: PPPDE domain-containing protein
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
7WHP
DownloadVisualize
BU of 7whp by Molmil
Pentameric turret of Bombyx mori cytoplasmic polyhedrosis virus after spike detaches.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, S-ADENOSYLMETHIONINE, Structural protein VP3
著者Zhang, Y, Cui, Y, Sun, J, Zhou, Z.H.
登録日2021-12-31
公開日2022-02-02
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Multiple conformations of trimeric spikes visualized on a non-enveloped virus.
Nat Commun, 13, 2022
3UUX
DownloadVisualize
BU of 3uux by Molmil
Crystal structure of yeast Fis1 in complex with Mdv1 fragment containing N-terminal extension and coiled coil domains
分子名称: Mitochondria fission 1 protein, Mitochondrial division protein 1
著者Zhang, Y, Chan, N.C, Gristick, H, Chan, D.C.
登録日2011-11-28
公開日2012-02-08
最終更新日2012-04-25
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Crystal structure of mitochondrial fission complex reveals scaffolding function for mitochondrial division 1 (mdv1) coiled coil.
J.Biol.Chem., 287, 2012
3V7T
DownloadVisualize
BU of 3v7t by Molmil
Crystal Structure of Human Beta-Tryptase Complexed with a Synthetic Inhibitor with a Tropanylamide Scaffold
分子名称: CARBONATE ION, TPSB2 protein, {(3-exo)-3-[5-(aminomethyl)-2-fluorophenyl]-8-azabicyclo[3.2.1]oct-8-yl}(4-bromo-3-methyl-5-propoxythiophen-2-yl)methanone
著者Zhang, Y, Colonna, C, Michot, N.
登録日2011-12-22
公開日2012-03-14
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献A beta-tryptase inhibitor with a tropanylamide scaffold to improve in vitro stability and to lower hERG channel binding affinity
Bioorg.Med.Chem.Lett., 22, 2012
7DDY
DownloadVisualize
BU of 7ddy by Molmil
Crystal structure of an acetyl xylan esterase AlAXEase
分子名称: G-D-S-L family lipolytic protein
著者Zhang, Y, Li, P.Y, Zhang, Y.Z.
登録日2020-10-30
公開日2021-06-02
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.505 Å)
主引用文献Active site architecture of an acetyl xylan esterase indicates a novel cold adaptation strategy.
J.Biol.Chem., 297, 2021
7VP1
DownloadVisualize
BU of 7vp1 by Molmil
Structure of a transcription factor and DNA complex
分子名称: DNA (5'-D(*AP*TP*GP*TP*GP*GP*TP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*GP*GP*AP*CP*CP*AP*CP*A)-3'), Transcription factor TCP10
著者Zhang, Y, Xu, Y.P, Wang, B, Su, X.D.
登録日2021-10-15
公開日2022-10-19
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献Structural basis for DNA recognition by TCP transcription factors
To Be Published

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon