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PDB: 437 results

6C8M
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BU of 6c8m by Molmil
RNA-activated 2-AIpG monomer, 1.5h soaking
Descriptor: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'), ...
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-25
Release date:2018-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8J
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BU of 6c8j by Molmil
RNA-activated 2-AIpG monomer complex, 15 min soaking
Descriptor: 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-24
Release date:2018-05-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8N
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BU of 6c8n by Molmil
RNA-activated 2-AIpG monomer complex, 2h soaking
Descriptor: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, 5'-O-[(R)-(2-amino-1H-imidazol-1-yl)(hydroxy)phosphoryl]guanosine, MAGNESIUM ION, ...
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-25
Release date:2018-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6CAB
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BU of 6cab by Molmil
RNA-dGMP complex with Sr ion
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3'), STRONTIUM ION
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-29
Release date:2018-05-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
6C8E
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BU of 6c8e by Molmil
RNA-imidazolium-bridged intermediate complex, 4h soaking
Descriptor: 2-amino-1-[(R)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-3-[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]-1H-imidazol-3-ium, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
Authors:Zhang, W, Szostak, J.W.
Deposit date:2018-01-24
Release date:2018-05-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystallographic observation of nonenzymatic RNA primer extension.
Elife, 7, 2018
2L32
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BU of 2l32 by Molmil
solution structure of ubiquitin-like small archaeal modifier protein in Haloferax volcanii
Descriptor: Small archaeal modifier protein 2
Authors:Zhang, W, Fan, K, Liao, S, Tu, X.
Deposit date:2010-09-01
Release date:2011-10-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:solution structure of ubiquitin-like small archaeal modifier protein in Haloferax volcanii
To be Published
2LJI
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BU of 2lji by Molmil
Structure of a protein from Haloferax volcanii
Descriptor: Small archaeal modifier protein 2
Authors:Zhang, W, Liao, S, Fan, K.
Deposit date:2011-09-14
Release date:2012-10-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure of a protein from Haloferax volcanii
To be Published
2MHA
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BU of 2mha by Molmil
CRYSTAL STRUCTURE OF THE MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I H-2KB MOLECULE CONTAINING A SINGLE VIRAL PEPTIDE: IMPLICATIONS FOR PEPTIDE BINDING AND T-CELL RECEPTOR RECOGNITION
Descriptor: BETA 2-MICROGLOBULIN, CLASS I HISTOCOMPATIBILITY ANTIGEN (H-2KB) (ALPHA CHAIN), VIRAL OCTAPEPTIDE ARG-GLY-TYR-VAL-TYR-GLN-GLY-LEU
Authors:Zhang, W, Young, A.C.M, Imarai, M, Nathenson, S.G, Sacchettini, J.C.
Deposit date:1993-07-21
Release date:1993-10-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the major histocompatibility complex class I H-2Kb molecule containing a single viral peptide: implications for peptide binding and T-cell receptor recognition.
Proc.Natl.Acad.Sci.USA, 89, 1992
6K0R
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BU of 6k0r by Molmil
Ruvbl1-Ruvbl2 with truncated domain II in complex with phosphorylated Cordycepin
Descriptor: 3'-DEOXYADENOSINE-5'-TRIPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Zhang, W, Chen, L, Li, W, Ju, D, Huang, N, Zhang, E.
Deposit date:2019-05-07
Release date:2020-05-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.502 Å)
Cite:Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals.
Sci Transl Med, 12, 2020
4DIX
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BU of 4dix by Molmil
Crystal structure of the Ig-PH domain of actin-binding protein SCAB1
Descriptor: MALONATE ION, Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
4DJG
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BU of 4djg by Molmil
Crystal structure of the coiled-coil 1 domain of actin-binding protein SCAB1
Descriptor: Plectin-related protein
Authors:Zhang, W, Ye, K.
Deposit date:2012-02-01
Release date:2012-02-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Plant actin-binding protein SCAB1 is dimeric actin cross-linker with atypical pleckstrin homology domain
J.Biol.Chem., 287, 2012
4F4N
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BU of 4f4n by Molmil
Crystal structure of 2-se-thymidine derivatized dna 8mer
Descriptor: 5'-D(*GP*TP*GP*(US3)P*AP*CP*AP*C)-3'
Authors:Zhang, W, Sheng, J, Huang, Z.
Deposit date:2012-05-10
Release date:2012-06-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal structure of 2-se-thymidine derivatized dna 8mer
TO BE PUBLISHED
4FP6
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BU of 4fp6 by Molmil
DNA octamer d(gtggccac) with 2'-se modification
Descriptor: CHLORIDE ION, DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3')
Authors:Zhang, W, Sheng, J, Huang, Z.
Deposit date:2012-06-21
Release date:2012-08-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:DNA octamer d(gtggccac) with 2'-se modification
TO BE PUBLISHED
4MH7
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BU of 4mh7 by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1896
Descriptor: CHLORIDE ION, MAGNESIUM ION, N-butyl-2-(butylamino)-4-[(trans-4-hydroxycyclohexyl)amino]-N-methylpyrimidine-5-carboxamide, ...
Authors:Zhang, W, McIver, A, Stashko, M.A, Deryckere, D, Branchford, B.R, Hunter, D, Kireev, D.B, Miley, M.J, Norris-Drouin, J, Stewart, W.M, Lee, M, Sather, S, Zhou, Y, DiPaola, J.A, Machius, M, Janzen, W.P, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
Deposit date:2013-08-29
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Discovery of Mer specific tyrosine kinase inhibitors for the treatment and prevention of thrombosis.
J.Med.Chem., 56, 2013
4MHA
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BU of 4mha by Molmil
Crystal structure of the catalytic domain of the proto-oncogene tyrosine-protein kinase MER in complex with inhibitor UNC1817
Descriptor: 2-(butylamino)-4-[(trans-4-hydroxycyclohexyl)amino]-N-(4-sulfamoylbenzyl)pyrimidine-5-carboxamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Zhang, W, Mciver, A, Stashko, M.A, Deryckere, D, Branchford, B.R, Hunter, D, Kireev, D.B, Miley, D.B.M, Norris-Drouin, J, Stewart, W.M, Lee, M, Sather, S, Zhou, Y, Dipaola, J.A, Machius, M, Janzen, W.P, Earp, H.S, Graham, D.K, Frye, S, Wang, X.
Deposit date:2013-08-29
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Discovery of Mer specific tyrosine kinase inhibitors for the treatment and prevention of thrombosis.
J.Med.Chem., 56, 2013
4IAA
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BU of 4iaa by Molmil
Crystal structure of Ser/Thr kinase Pim1 in complex with thioridazine
Descriptor: 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine, Serine/threonine-protein kinase pim-1
Authors:Zhang, W, Wan, X, Li, W, Xie, Y, Huang, N.
Deposit date:2012-12-06
Release date:2013-12-18
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Crystal structure of Ser/Thr kinase Pim1 in complex with thioridazine
To be Published
3FFM
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BU of 3ffm by Molmil
The crystal structure of human Gadd45g
Descriptor: Growth arrest and DNA-damage-inducible protein GADD45 gamma
Authors:Zhang, W.Z, Fu, S, Zeng, Z.H, Rao, Z.H.
Deposit date:2008-12-04
Release date:2010-01-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of human Gadd45g
To be Published
4I41
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BU of 4i41 by Molmil
Crystal Structure of human Ser/Thr kinase Pim1 in complex with mitoxantrone
Descriptor: 1,4-DIHYDROXY-5,8-BIS({2-[(2-HYDROXYETHYL)AMINO]ETHYL}AMINO)-9,10-ANTHRACENEDIONE, Serine/threonine-protein kinase pim-1
Authors:Zhang, W, Wan, X, Xie, Y, Huang, N.
Deposit date:2012-11-27
Release date:2013-12-11
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A new target for an old drug: identifying mitoxantrone as a nanomolar inhibitor of PIM1 kinase via kinome-wide selectivity modeling.
J. Med. Chem., 56, 2013
5TGP
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BU of 5tgp by Molmil
DNA 8mer containing two 2SeT modifications
Descriptor: DNA/RNA (5'-R(*G)-D(P*(2ST))-R(P*G)-D(P*(2ST))-R(P*AP*CP*AP*C)-3')
Authors:Zhang, W, Huang, Z.
Deposit date:2016-09-28
Release date:2017-10-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA 8mer containing two 2SeT modifications
To Be Published
4ACS
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BU of 4acs by Molmil
Crystal structure of mutant GST A2-2 with enhanced catalytic efficiency with azathioprine
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE A2
Authors:Zhang, W, Moden, O, Tars, K, Mannervik, B.
Deposit date:2011-12-19
Release date:2011-12-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based redesign of GST A2-2 for enhanced catalytic efficiency with azathioprine.
Chem.Biol., 19, 2012
5WCO
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BU of 5wco by Molmil
Matrix Protein (M1) of Infectious Salmon Anaemia Virus
Descriptor: NS2
Authors:Zhang, W, Zheng, W, Toh, Y, Betancourt, M.A, Tu, J, Fan, Y, Vakharia, V, Liu, J, McNew, J.A, Jin, M, Tao, Y.J.
Deposit date:2017-07-01
Release date:2017-08-16
Last modified:2019-12-11
Method:X-RAY DIFFRACTION (2.604 Å)
Cite:Crystal structure of an orthomyxovirus matrix protein reveals mechanisms for self-polymerization and membrane association.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
3J0B
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BU of 3j0b by Molmil
cryo-EM reconstruction of West Nile virus
Descriptor: envelope glycoprotein E
Authors:Zhang, W, Kaufmann, B, Chipman, P.R, Kuhn, R.J, Rossmann, M.G.
Deposit date:2011-06-15
Release date:2012-12-19
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (10.3 Å)
Cite:Membrane curvature in flaviviruses.
J.Struct.Biol., 183, 2013
4JTX
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BU of 4jtx by Molmil
Crystal structure of 2009 pandemic influenza virus hemagglutinin mutant D225E
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.997 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
4JUG
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BU of 4jug by Molmil
Crystal structure of 1918 pandemic influenza virus hemagglutinin mutant D225G
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhang, W, Shi, Y, Qi, J, Gao, F, Li, Q, Fan, Z, Yan, J, Gao, G.F.
Deposit date:2013-03-24
Release date:2013-05-01
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis of the receptor binding specificity switch of the hemagglutinins from both the 1918 and 2009 pandemic influenza A viruses by a D225G substitution
J.Virol., 87, 2013
5ZHY
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BU of 5zhy by Molmil
Structural characterization of the HCoV-229E fusion core
Descriptor: Spike glycoprotein
Authors:Zhang, W, Zheng, Q, Yan, M, Chen, X, Yang, H, Zhou, W, Rao, Z.
Deposit date:2018-03-13
Release date:2018-06-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.441 Å)
Cite:Structural characterization of the HCoV-229E fusion core.
Biochem. Biophys. Res. Commun., 497, 2018

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