Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 873 results

6IMM
DownloadVisualize
BU of 6imm by Molmil
Cryo-EM structure of an alphavirus, Sindbis virus
Descriptor: Assembly protein E3, Octadecane, Spike glycoprotein E1, ...
Authors:Zhang, X, Ma, J, Chen, L.
Deposit date:2018-10-23
Release date:2019-03-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Implication for alphavirus host-cell entry and assembly indicated by a 3.5 angstrom resolution cryo-EM structure.
Nat Commun, 9, 2018
6J6A
DownloadVisualize
BU of 6j6a by Molmil
Crystal structure of TldE from Thermococcus kodakarensis
Descriptor: Zinc-dependent protease, TldD/PmbA family
Authors:Zhang, X, Liu, J.
Deposit date:2019-01-14
Release date:2020-01-15
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.353 Å)
Cite:Crystal structure of TldE from Thermococcus kodakarensis
To Be Published
6K5L
DownloadVisualize
BU of 6k5l by Molmil
The crystal structure of isocitrate dehydrogenase kinase/phosphatase wtih two Mn2+ from E. coli
Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, Isocitrate dehydrogenase kinase/phosphatase, ...
Authors:Zhang, X, Lei, Z, Zheng, J, Jia, Z.
Deposit date:2019-05-29
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Characterization of metal binding of bifunctional kinase/phosphatase AceK and implication in activity modulation.
Sci Rep, 9, 2019
5XJC
DownloadVisualize
BU of 5xjc by Molmil
Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Zhang, X, Yan, C, Hang, J, Finci, I.L, Lei, J, Shi, Y.
Deposit date:2017-04-30
Release date:2017-07-05
Last modified:2020-10-14
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:An Atomic Structure of the Human Spliceosome
Cell, 169, 2017
5ZH9
DownloadVisualize
BU of 5zh9 by Molmil
Crystal Structures of Mutant Endo-beta-1,4-xylanase II (Y88F)
Descriptor: Endo-1,4-beta-xylanase 2, IODIDE ION
Authors:Zhang, X, Wan, Q.
Deposit date:2018-03-12
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Crystal Structures of Mutant Endo-beta-1,4-xylanase II
To be published
5ZE3
DownloadVisualize
BU of 5ze3 by Molmil
Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Lysyl oxidase homolog 2, ...
Authors:Zhang, X, Liu, M.
Deposit date:2018-02-25
Release date:2018-04-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human lysyl oxidase-like 2 (hLOXL2) in a precursor state.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5Z94
DownloadVisualize
BU of 5z94 by Molmil
Crystal Structure of SIRT3 in complex with H3K4bhb peptide
Descriptor: CITRIC ACID, GLYCEROL, Gene for histone H3 (germline gene), ...
Authors:Zhang, X, Li, H.
Deposit date:2018-02-02
Release date:2019-02-06
Method:X-RAY DIFFRACTION (1.899 Å)
Cite:Crystal Structure of SIRT3 in complex with H3K4bhb peptide
To Be Published
5Z93
DownloadVisualize
BU of 5z93 by Molmil
Crystal Structure of SIRT3 in complex with H3K9bhb peptide
Descriptor: Gene for histone H3 (germline gene), NAD-dependent protein deacetylase sirtuin-3, mitochondrial, ...
Authors:Zhang, X, Li, H.
Deposit date:2018-02-02
Release date:2019-02-06
Method:X-RAY DIFFRACTION (1.945 Å)
Cite:Crystal Structure of SIRT3 in complex with H3K9bhb peptide
To Be Published
5ZF3
DownloadVisualize
BU of 5zf3 by Molmil
Crystal Structures of Endo-beta-1,4-xylanase II Complexed with Xylotriose
Descriptor: Endo-1,4-beta-xylanase 2, GLYCEROL, IODIDE ION, ...
Authors:Zhang, X, Wan, Q, Li, Z.
Deposit date:2018-03-02
Release date:2019-03-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal Structures of Endo-beta-1,4-xylanase II Complexed with Xylotriose
To be published
5ZH0
DownloadVisualize
BU of 5zh0 by Molmil
Crystal Structures of Endo-beta-1,4-xylanase II
Descriptor: Endo-1,4-beta-xylanase 2, GLYCEROL, IODIDE ION
Authors:Zhang, X, Wan, Q, Li, Z.
Deposit date:2018-03-10
Release date:2019-03-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal Structures of Endo-beta-1,4-xylanase II
To be published
7DY8
DownloadVisualize
BU of 7dy8 by Molmil
Thermotoga maritima ferritin mutant-FLAL
Descriptor: CALCIUM ION, FE (III) ION, Ferritin
Authors:Zhang, X, Zhao, G.
Deposit date:2021-01-20
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:Protein interface redesign facilitates the transformation of nanocage building blocks to 1D and 2D nanomaterials.
Nat Commun, 12, 2021
7DYA
DownloadVisualize
BU of 7dya by Molmil
Crystal structure of TmFtn with calcium ions
Descriptor: CALCIUM ION, FE (III) ION, Ferritin
Authors:Zhang, X, Zhao, G.
Deposit date:2021-01-20
Release date:2021-09-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.197 Å)
Cite:Protein interface redesign facilitates the transformation of nanocage building blocks to 1D and 2D nanomaterials.
Nat Commun, 12, 2021
7DV8
DownloadVisualize
BU of 7dv8 by Molmil
The crystal structure of rice immune receptor RGA5-HMA2.
Descriptor: Disease resistance protein RGA5
Authors:Zhang, X, Liu, J.F.
Deposit date:2021-01-12
Release date:2021-10-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.447 Å)
Cite:A designer rice NLR immune receptor confers resistance to the rice blast fungus carrying noncorresponding avirulence effectors.
Proc.Natl.Acad.Sci.USA, 118, 2021
7FFO
DownloadVisualize
BU of 7ffo by Molmil
Cryo-EM structure of VEEV VLP at the 5-fold axes
Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7FFQ
DownloadVisualize
BU of 7ffq by Molmil
Cryo-EM structure of VEEV VLP at the 2-fold axes
Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7FFE
DownloadVisualize
BU of 7ffe by Molmil
Cryo-EM structure of VEEV VLP
Descriptor: Capsid protein, Spike glycoprotein E1, Spike glycoprotein E2, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7FFL
DownloadVisualize
BU of 7ffl by Molmil
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 2-fold axes
Descriptor: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7FFF
DownloadVisualize
BU of 7fff by Molmil
Structure of Venezuelan equine encephalitis virus with the receptor LDLRAD3
Descriptor: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7FFN
DownloadVisualize
BU of 7ffn by Molmil
Cryo-EM structure of VEEV VLP-LDLRAD3-D1 complex at the 5-fold axes
Descriptor: CALCIUM ION, Capsid protein, Low-density lipoprotein receptor class A domain-containing protein 3, ...
Authors:Zhang, X, Xiang, Y, Ma, J, Ma, B, Huang, C.
Deposit date:2021-07-23
Release date:2021-10-20
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure of Venezuelan equine encephalitis virus with its receptor LDLRAD3.
Nature, 598, 2021
7YC8
DownloadVisualize
BU of 7yc8 by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 1 undergoing the first-step self-splicing
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, RNA (388-MER)
Authors:Zhang, X, Li, S, Pintilie, G, Palo, M.Z, Zhang, K.
Deposit date:2022-07-01
Release date:2023-07-05
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nucleic Acids Res., 51, 2023
7YCG
DownloadVisualize
BU of 7ycg by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (393-MER), ...
Authors:Zhang, X, Li, S, Pintilie, G, Palo, M.Z, Zhang, K.
Deposit date:2022-07-01
Release date:2023-07-05
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nucleic Acids Res., 51, 2023
7YCI
DownloadVisualize
BU of 7yci by Molmil
Cryo-EM structure of Tetrahymena ribozyme conformation 4 undergoing the first-step self-splicing
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (389-MER), ...
Authors:Zhang, X, Li, S, Pintilie, G, Palo, M.Z, Zhang, K.
Deposit date:2022-07-01
Release date:2023-07-05
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM.
Nucleic Acids Res., 51, 2023
7DVG
DownloadVisualize
BU of 7dvg by Molmil
Crystal structure of rice immune receptor RGA5-HMA5 mutant.
Descriptor: Disease resistance protein RGA5
Authors:Zhang, X, Liu, J.F.
Deposit date:2021-01-13
Release date:2022-01-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rice immune receptor RGA5-HMA5.
To Be Published
7VH2
DownloadVisualize
BU of 7vh2 by Molmil
Cryo-EM structure of Machupo virus dimeric polymerase L
Descriptor: RNA-directed RNA polymerase L
Authors:Zhang, X, Ma, J, Zhang, S.
Deposit date:2021-09-20
Release date:2021-09-29
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (5.1 Å)
Cite:Structure of Machupo virus polymerase in complex with matrix protein Z.
Nat Commun, 12, 2021
7VGQ
DownloadVisualize
BU of 7vgq by Molmil
Cryo-EM structure of Machupo virus polymerase L in complex with matrix protein Z
Descriptor: Maltose/maltodextrin-binding periplasmic protein,RING finger protein Z, RNA-directed RNA polymerase L, ZINC ION
Authors:Zhang, X, Ma, J, Zhang, S.
Deposit date:2021-09-18
Release date:2021-09-29
Last modified:2022-03-02
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structure of Machupo virus polymerase in complex with matrix protein Z.
Nat Commun, 12, 2021

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon