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PDB: 774 results

4LCK
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BU of 4lck by Molmil
Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA
Descriptor: MAGNESIUM ION, Ribosomal protein YbxF, STRONTIUM ION, ...
Authors:Zhang, J, Ferre-D'Amare, A.R.
Deposit date:2013-06-21
Release date:2013-07-31
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA.
Nature, 500, 2013
7Y85
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BU of 7y85 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA in complex with TPR-CHAT protease bound to self RNA target
Descriptor: CHAT domain protein, MAGNESIUM ION, RAMP superfamily protein, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7Y81
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BU of 7y81 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA complex bound to non-self RNA target
Descriptor: MAGNESIUM ION, Non-self RNA target, RAMP superfamily protein, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7Y82
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BU of 7y82 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA complex bound to self RNA target
Descriptor: MAGNESIUM ION, RAMP superfamily protein, Self RNA target, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.83 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7Y83
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BU of 7y83 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA in complex with TPR-CHAT protease bound to non-self RNA target
Descriptor: CHAT domain protein, MAGNESIUM ION, RAMP superfamily protein, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7Y80
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BU of 7y80 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA binary complex
Descriptor: MAGNESIUM ION, RAMP superfamily protein, ZINC ION, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7Y84
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BU of 7y84 by Molmil
CryoEM structure of type III-E CRISPR Craspase gRAMP-crRNA in complex with TPR-CHAT protease
Descriptor: CHAT domain protein, MAGNESIUM ION, RAMP superfamily protein, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-06-22
Release date:2022-12-14
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structural basis for the non-self RNA-activated protease activity of the type III-E CRISPR nuclease-protease Craspase.
Nat Commun, 13, 2022
7DGD
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BU of 7dgd by Molmil
apo state of class C GPCR
Descriptor: Metabotropic glutamate receptor 1
Authors:Zhang, J.Y, Wu, L.J, Luo, F, Hua, T, Liu, Z.J.
Deposit date:2020-11-11
Release date:2021-09-22
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Structural insights into the activation initiation of full-length mGlu1.
Protein Cell, 12, 2021
7DGE
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BU of 7dge by Molmil
intermediate state of class C GPCR
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, Metabotropic glutamate receptor 1, nanobody
Authors:Zhang, J.Y, Wu, L.J, Luo, F, Hua, T, Liu, Z.J.
Deposit date:2020-11-11
Release date:2021-09-22
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Structural insights into the activation initiation of full-length mGlu1.
Protein Cell, 12, 2021
6LZ1
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BU of 6lz1 by Molmil
Structure of S.pombe alpha-mannosidase Ams1
Descriptor: Ams1, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-02-17
Release date:2020-09-09
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-EM structure of fission yeast tetrameric alpha-mannosidase Ams1.
Febs Open Bio, 10, 2020
6AR6
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BU of 6ar6 by Molmil
Clostridioides difficile toxinB with DLD-4 darpin
Descriptor: DLD-4 darpin, Toxin B
Authors:Zhang, J, Jiang, M.
Deposit date:2017-08-21
Release date:2018-08-22
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Clostridioides difficile toxinB with DLD-4 darpin
To Be Published
7DDE
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BU of 7dde by Molmil
Cryo-EM structure of the Ape4 and Nbr1 complex
Descriptor: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-10-28
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.26 Å)
Cite:Molecular and structural mechanisms of ZZ domain-mediated cargo selection by Nbr1.
Embo J., 40, 2021
7DD9
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BU of 7dd9 by Molmil
Cryo-EM structure of the Ams1 and Nbr1 complex
Descriptor: Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-10-28
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Molecular and structural mechanisms of ZZ domain-mediated cargo selection by Nbr1.
Embo J., 40, 2021
8IFK
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BU of 8ifk by Molmil
Cryo-EM structure of monomeric SPARTA gRNA-ssDNA target complex
Descriptor: MAGNESIUM ION, Piwi domain-containing protein, TIR domain-containing protein, ...
Authors:Zhang, J.T, Jia, N.
Deposit date:2023-02-18
Release date:2024-01-17
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system.
Nat.Chem.Biol., 20, 2024
7V9G
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BU of 7v9g by Molmil
Native BEN4 domain of protein Bend3 with DNA
Descriptor: BEN domain-containing protein 3, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3')
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
5Z8H
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BU of 5z8h by Molmil
APC with an inhibitor
Descriptor: Adenomatous polyposis coli protein, GLYCEROL, Peptide inhibitor
Authors:Zhang, J, Yang, X.Y, Song, K.
Deposit date:2018-01-31
Release date:2019-02-06
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:APC with an inhibitor
To Be Published
5X16
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BU of 5x16 by Molmil
Sirt6 apo structure
Descriptor: GLYCEROL, NAD-dependent protein deacetylase sirtuin-6, TERTIARY-BUTYL ALCOHOL, ...
Authors:Zhang, J, Huang, Z, Song, K.
Deposit date:2017-01-24
Release date:2018-07-04
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Sirt6 apo structure
To Be Published
7EEQ
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BU of 7eeq by Molmil
Cyanophage Pam1 tail machine
Descriptor: Needle head proteins, Tailspike head-binding domain
Authors:Zhang, J.T, Jiang, Y.L, Zhou, C.Z.
Deposit date:2021-03-19
Release date:2021-10-20
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.96 Å)
Cite:Structure and assembly pattern of a freshwater short-tailed cyanophage Pam1.
Structure, 30, 2022
7EEP
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BU of 7eep by Molmil
Cyanophage Pam1 portal-adaptor complex
Descriptor: Pam1 adaptor proteins, Pam1 portal proteins
Authors:Zhang, J.T, Jiang, Y.L, Zhou, C.Z.
Deposit date:2021-03-19
Release date:2021-10-20
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Structure and assembly pattern of a freshwater short-tailed cyanophage Pam1.
Structure, 30, 2022
7EEL
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BU of 7eel by Molmil
Cyanophage Pam1 capsid asymmetric unit
Descriptor: Cement (decoration) proteins, Major capsid proteins
Authors:Zhang, J.T, Jiang, Y.L, Zhou, C.Z.
Deposit date:2021-03-19
Release date:2021-10-20
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Structure and assembly pattern of a freshwater short-tailed cyanophage Pam1.
Structure, 30, 2022
7WNW
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BU of 7wnw by Molmil
Crystal structure of Imine Reductase Mutant(M5) from Actinoalloteichus hymeniacidonis in complex with NADPH
Descriptor: 3-hydroxyisobutyrate dehydrogenase-like beta-hydroxyacid dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zhand, J, Chen, R, Gao, S.
Deposit date:2022-01-19
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Tuning an Imine Reductase for the Asymmetric Synthesis of Azacycloalkylamines by Concise Structure-Guided Engineering.
Angew.Chem.Int.Ed.Engl., 61, 2022
7V9I
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BU of 7v9i by Molmil
The Monomer mutant of BEN4 domain of protein Bend3 with DNA
Descriptor: BEN domain-containing protein 3, DNA (5'-D(*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*T)-3')
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
7V9H
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BU of 7v9h by Molmil
The BEN3 domain of protein Bend3
Descriptor: BEN domain-containing protein 3
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.692 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
7V9F
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BU of 7v9f by Molmil
Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA
Descriptor: BEN domain-containing protein 3, CITRIC ACID, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), ...
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2022-03-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
7C6O
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BU of 7c6o by Molmil
Catalytic Subunit of Cobaltochelatase from Mycobacterium tuberculosis
Descriptor: Cobalamin biosynthesis protein CobN, GLYCEROL, SODIUM ION
Authors:Zhang, J, Liu, L.
Deposit date:2020-05-22
Release date:2020-12-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Crystal structure of the large subunit of cobaltochelatase from Mycobacterium tuberculosis.
Proteins, 89, 2021

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PDB entries from 2024-10-09

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