Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 769 results

7V9F
DownloadVisualize
BU of 7v9f by Molmil
Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA
Descriptor: BEN domain-containing protein 3, CITRIC ACID, DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3'), ...
Authors:Zhang, J, Zhang, Y, You, Q, Huang, C, Zhang, T, Wang, M, Zhang, T, Yang, X, Xiong, J, Li, Y, Liu, C.P, Zhang, Z, Xu, R.M, Zhu, B.
Deposit date:2021-08-25
Release date:2022-02-16
Last modified:2022-03-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Highly enriched BEND3 prevents the premature activation of bivalent genes during differentiation.
Science, 375, 2022
5Y6P
DownloadVisualize
BU of 5y6p by Molmil
Structure of the phycobilisome from the red alga Griffithsia pacifica
Descriptor: ApcD, ApcF, LC, ...
Authors:Zhang, J, Ma, J.F, Liu, D.S, Sun, S, Sui, S.F.
Deposit date:2017-08-13
Release date:2017-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of phycobilisome from the red alga Griffithsia pacifica
Nature, 551, 2017
4PY0
DownloadVisualize
BU of 4py0 by Molmil
Crystal structure of P2Y12 receptor in complex with 2MeSATP
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(methylsulfanyl)adenosine 5'-(tetrahydrogen triphosphate), P2Y purinoceptor 12, ...
Authors:Zhang, J, Zhang, K, Gao, Z.G, Paoletta, S, Zhang, D, Han, G.W, Li, T, Ma, L, Zhang, W, Muller, C.E, Yang, H, Jiang, H, Cherezov, V, Katritch, V, Jacobson, K.A, Stevens, R.C, Wu, B, Zhao, Q, GPCR Network (GPCR)
Deposit date:2014-03-25
Release date:2014-04-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Agonist-bound structure of the human P2Y12 receptor
Nature, 509, 2014
3TC1
DownloadVisualize
BU of 3tc1 by Molmil
Crystal Structure of Octaprenyl Pyrophosphate Synthase from Helicobacter pylori
Descriptor: MAGNESIUM ION, Octaprenyl Pyrophosphate Synthase
Authors:Zhang, J.Y, Zhang, X.L, Li, D.F, Zou, Q.M, Wang, D.C.
Deposit date:2011-08-08
Release date:2011-08-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Octaprenyl Pyrophosphate Synthase from Helicobacter pylori
To be Published
5ZXL
DownloadVisualize
BU of 5zxl by Molmil
Structure of GldA from E.coli
Descriptor: CHLORIDE ION, GLYCEROL, Glycerol dehydrogenase, ...
Authors:Zhang, J, Lin, L.
Deposit date:2018-05-21
Release date:2019-03-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.794 Å)
Cite:Structure of glycerol dehydrogenase (GldA) from Escherichia coli.
Acta Crystallogr F Struct Biol Commun, 75, 2019
7M5D
DownloadVisualize
BU of 7m5d by Molmil
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Zhang, J.
Deposit date:2021-03-23
Release date:2022-10-19
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
To Be Published
7DDE
DownloadVisualize
BU of 7dde by Molmil
Cryo-EM structure of the Ape4 and Nbr1 complex
Descriptor: Aspartyl aminopeptidase 1,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-10-28
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.26 Å)
Cite:Molecular and structural mechanisms of ZZ domain-mediated cargo selection by Nbr1.
Embo J., 40, 2021
7DD9
DownloadVisualize
BU of 7dd9 by Molmil
Cryo-EM structure of the Ams1 and Nbr1 complex
Descriptor: Alpha-mannosidase,ZZ-type zinc finger-containing protein P35G2.11c,Maltose/maltodextrin-binding periplasmic protein, ZINC ION
Authors:Zhang, J, Ye, K.
Deposit date:2020-10-28
Release date:2021-07-14
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Molecular and structural mechanisms of ZZ domain-mediated cargo selection by Nbr1.
Embo J., 40, 2021
8ISM
DownloadVisualize
BU of 8ism by Molmil
HSA-Pt compound complex
Descriptor: 7-(2-azanyl-5-chloranyl-phenyl)-3$l^{3}-thia-5,6$l^{4}-diaza-2$l^{3}-platinatricyclo[6.4.0.0^{2,6}]dodeca-1(12),3,6,8,10-pentaen-4-amine, PALMITIC ACID, Serum albumin
Authors:Zhang, J.Z, Zhang, Z.L.
Deposit date:2023-03-21
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:HSA-Pt compound complex
To Be Published
7YFF
DownloadVisualize
BU of 7yff by Molmil
Structure of GluN1a-GluN2D NMDA receptor in complex with agonist glycine and competitive antagonist CPP.
Descriptor: (2R)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Zhang, J.L, Zhu, S.J, Zhang, M.
Deposit date:2022-07-08
Release date:2023-04-12
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Distinct structure and gating mechanism in diverse NMDA receptors with GluN2C and GluN2D subunits.
Nat.Struct.Mol.Biol., 30, 2023
7YFL
DownloadVisualize
BU of 7yfl by Molmil
Structure of GluN1a-GluN2D NMDA receptor in complex with agonists glycine and glutamate.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLUTAMIC ACID, ...
Authors:Zhang, J.L, Zhu, S.J, Zhang, M.
Deposit date:2022-07-08
Release date:2023-04-12
Last modified:2023-08-02
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Distinct structure and gating mechanism in diverse NMDA receptors with GluN2C and GluN2D subunits.
Nat.Struct.Mol.Biol., 30, 2023
5H3V
DownloadVisualize
BU of 5h3v by Molmil
Crystal structure of a Type IV Secretion System Component CagX in Helicobacter pylori
Descriptor: Cag8, DI(HYDROXYETHYL)ETHER, ISOPROPYL ALCOHOL
Authors:Zhang, J, Wu, Y, Zhao, Y, Sun, L, Keegan, R.M, Liu, Y, Isupov, M.N.
Deposit date:2016-10-27
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the type IV secretion system component CagX from Helicobacter pylori
Acta Crystallogr F Struct Biol Commun, 73, 2017
8K1I
DownloadVisualize
BU of 8k1i by Molmil
Crystal structure of arabinose dehydrogenase from Candida auris
Descriptor: NADP-dependent oxidoreductase domain-containing protein
Authors:Zhang, J, Bai, X, He, S.R, Zhao, Z.D.
Deposit date:2023-07-11
Release date:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of arabinose dehydrogenase from Candida auris
To Be Published
8K34
DownloadVisualize
BU of 8k34 by Molmil
Cryo-EM structure of SPARTA gRNA binary complex
Descriptor: MAGNESIUM ION, Piwi domain-containing protein, RNA (5'-R(P*AP*AP*AP*CP*GP*GP*CP*UP*CP*UP*AP*AP*UP*CP*UP*AP*UP*UP*AP*GP*U)-3'), ...
Authors:Zhang, J.T, Jia, N.
Deposit date:2023-07-14
Release date:2024-01-17
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Target ssDNA activates the NADase activity of prokaryotic SPARTA immune system.
Nat.Chem.Biol., 20, 2024
7XG3
DownloadVisualize
BU of 7xg3 by Molmil
CryoEM structure of type IV-A CasDinG bound NTS-nicked Csf-crRNA-dsDNA quaternary complex
Descriptor: Csf1, Csf2, Csf3, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-04-02
Release date:2023-08-09
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.
Mol.Cell, 83, 2023
7XG0
DownloadVisualize
BU of 7xg0 by Molmil
CryoEM structure of type IV-A Csf-crRNA-dsDNA ternary complex
Descriptor: Csf1, Csf2, Csf3, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-04-02
Release date:2023-08-09
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.
Mol.Cell, 83, 2023
7XG4
DownloadVisualize
BU of 7xg4 by Molmil
CryoEM structure of type IV-A CasDinG bound NTS-nicked Csf-crRNA-dsDNA quaternary complex in a second state
Descriptor: Csf1, Csf2, Csf3, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-04-02
Release date:2023-08-09
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.
Mol.Cell, 83, 2023
7XG2
DownloadVisualize
BU of 7xg2 by Molmil
CryoEM structure of type IV-A NTS-nicked dsDNA bound Csf-crRNA ternary complex
Descriptor: Csf1, Csf2, Csf3, ...
Authors:Zhang, J.T, Cui, N, Huang, H.D, Jia, N.
Deposit date:2022-04-02
Release date:2023-08-09
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Type IV-A CRISPR-Csf complex: Assembly, dsDNA targeting, and CasDinG recruitment.
Mol.Cell, 83, 2023
4TV0
DownloadVisualize
BU of 4tv0 by Molmil
Drosophila stem-loop binding protein complexed with histone mRNA stem-loop, Selenomethionine derivative
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-09-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.601 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
4TUW
DownloadVisualize
BU of 4tuw by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region
Descriptor: CALCIUM ION, HISTONE MRNA 3' STEM LOOP, Histone RNA hairpin-binding protein
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014
7XMF
DownloadVisualize
BU of 7xmf by Molmil
Cryo-EM structure of human NaV1.7/beta1/beta2-Nav1.7-IN2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[[4-[3-(4-fluoranyl-2-methyl-phenoxy)azetidin-1-yl]pyrimidin-2-yl]amino]-~{N}-methyl-benzamide, ...
Authors:Zhang, J.T, Jiang, D.H.
Deposit date:2022-04-25
Release date:2022-11-30
Last modified:2022-12-28
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structural basis for Na V 1.7 inhibition by pore blockers.
Nat.Struct.Mol.Biol., 29, 2022
7XM9
DownloadVisualize
BU of 7xm9 by Molmil
Cryo-EM structure of human NaV1.7/beta1/beta2-XEN907
Descriptor: (7~{R})-1'-pentylspiro[6~{H}-furo[3,2-f][1,3]benzodioxole-7,3'-indole]-2'-one, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:zhang, J.T, Jiang, D.H.
Deposit date:2022-04-25
Release date:2022-11-30
Last modified:2022-12-28
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Structural basis for Na V 1.7 inhibition by pore blockers.
Nat.Struct.Mol.Biol., 29, 2022
8IW5
DownloadVisualize
BU of 8iw5 by Molmil
Crystal structure of liprin-beta H2H3 dimer
Descriptor: CALCIUM ION, Liprin-beta-1
Authors:Zhang, J, Chen, S, Wei, Z.
Deposit date:2023-03-29
Release date:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:KANK1 shapes focal adhesions by orchestrating protein binding, mechanical force sensing, and phase separation.
Cell Rep, 42, 2023
8IW0
DownloadVisualize
BU of 8iw0 by Molmil
Crystal structure of the KANK1/liprin-beta1 complex
Descriptor: Liprin-beta-1,KN motif and ankyrin repeat domain-containing protein 1
Authors:Zhang, J, Chen, S, Wei, Z, Yu, C.
Deposit date:2023-03-29
Release date:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:KANK1 shapes focal adhesions by orchestrating protein binding, mechanical force sensing, and phase separation.
Cell Rep, 42, 2023
4TUX
DownloadVisualize
BU of 4tux by Molmil
drosophila stem-loop binding protein complexed with histone mRNA stem-loop
Descriptor: CALCIUM ION, Histone RNA hairpin-binding protein, RNA (26-MER)
Authors:Zhang, J.
Deposit date:2014-06-25
Release date:2014-07-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation.
Proc.Natl.Acad.Sci.USA, 111, 2014

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon