Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 756 results

8J2P
DownloadVisualize
BU of 8j2p by Molmil
Crystal structure of PML B-box2
Descriptor: Maltose/maltodextrin-binding periplasmic protein,Protein PML, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Zhou, C, Zang, N, Zhang, J.
Deposit date:2023-04-15
Release date:2023-09-20
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural Basis of PML-RARA Oncoprotein Targeting by Arsenic Unravels a Cysteine Rheostat Controlling PML Body Assembly and Function.
Cancer Discov, 13, 2023
4R0X
DownloadVisualize
BU of 4r0x by Molmil
Allosteric coupling of conformational transitions in the FK1 domain of FKBP51 near the site of steroid receptor interaction
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP5
Authors:LeMaster, D.M, Mustafi, S.M, Brecher, M, Zhang, J, Heroux, A, Li, H.M, Hernandez, G.
Deposit date:2014-08-02
Release date:2015-05-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Coupling of Conformational Transitions in the N-terminal Domain of the 51-kDa FK506-binding Protein (FKBP51) Near Its Site of Interaction with the Steroid Receptor Proteins.
J.Biol.Chem., 290, 2015
2KLI
DownloadVisualize
BU of 2kli by Molmil
Structural Basis for the Photoconversion of A Phytochrome to the Activated FAR-RED LIGHT-ABSORBING Form
Descriptor: PHYCOCYANOBILIN, Sensor protein
Authors:Cornilescu, C.C, Cornilescu, G, Ulijasz, A.T, Zhang, J, Rivera, M, Vierstra, R.D, Markley, J.L, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-07-03
Release date:2009-11-03
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Structural basis for the photoconversion of a phytochrome to the activated Pfr form
Nature, 463, 2010
4N19
DownloadVisualize
BU of 4n19 by Molmil
Structural basis of conformational transitions in the active site and 80 s loop in the FK506 binding protein FKBP12
Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1A, SULFATE ION
Authors:Mustafi, S.M, Brecher, M.B, Zhang, J, Li, H.M, Lemaster, D.M, Hernandez, G.
Deposit date:2013-10-03
Release date:2014-02-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural basis of conformational transitions in the active site and 80's loop in the FK506-binding protein FKBP12.
Biochem.J., 458, 2014
2KXJ
DownloadVisualize
BU of 2kxj by Molmil
Solution structure of UBX domain of human UBXD2 protein
Descriptor: UBX domain-containing protein 4
Authors:Wu, Q, Huang, H, Zhang, J, Hu, Q, Wu, J, Shi, Y.
Deposit date:2010-05-06
Release date:2011-05-18
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution strcture of UBX domain of human UBXD2 protein
To be Published
2OQF
DownloadVisualize
BU of 2oqf by Molmil
Structure of a synthetic, non-natural analogue of RNase A: [N71K(Ade), D83A]RNase A
Descriptor: Ribonuclease pancreatic
Authors:Boerema, D.J, Tereshko, V.A, Zhang, J.L, He, C, Kent, S.B.H.
Deposit date:2007-01-31
Release date:2008-02-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Design, Synthesis, and Characterization of Non-natural RNase A Analogues with Enhanced Second-step Catalytic Activity
To be Published
2LKZ
DownloadVisualize
BU of 2lkz by Molmil
Solution structure of the second RRM domain of RBM5
Descriptor: RNA-binding protein 5
Authors:Song, Z, Wu, P, Zhang, J, Wu, J, Shi, Y.
Deposit date:2011-10-23
Release date:2012-08-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second RRM domain of RBM5 and its unusual binding characters for different RNA targets
Biochemistry, 2012
7YGF
DownloadVisualize
BU of 7ygf by Molmil
Crystal structure of YggS from Fusobacterium nucleatum
Descriptor: Pyridoxal phosphate homeostasis protein, SULFATE ION
Authors:He, S.R, Chan, Y.Y, Wang, L.L, Bai, X, Bu, T.T, Zhang, J, Xu, Y.B.
Deposit date:2022-07-11
Release date:2022-10-12
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural and Functional Analysis of the Pyridoxal Phosphate Homeostasis Protein YggS from Fusobacterium nucleatum.
Molecules, 27, 2022
7DJZ
DownloadVisualize
BU of 7djz by Molmil
Crystal structure of SARS-CoV-2 Spike RBD in complex with MW01 Fab
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CITRIC ACID, MW01 heavy chain, ...
Authors:Wang, J, Jiao, S, Wang, R, Zhang, J, Zhang, M, Wang, M.
Deposit date:2020-11-22
Release date:2021-06-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.397 Å)
Cite:Antibody-dependent enhancement (ADE) of SARS-CoV-2 pseudoviral infection requires Fc gamma RIIB and virus-antibody complex with bivalent interaction.
Commun Biol, 5, 2022
2L6K
DownloadVisualize
BU of 2l6k by Molmil
Solution Structure of a Nonphosphorylated Peptide Recognizing Domain
Descriptor: Tensin-like C1 domain-containing phosphatase
Authors:Dai, K, Liao, S, Zhang, J, Zhang, X, Tu, X.
Deposit date:2010-11-22
Release date:2011-10-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Tensin2 SH2 domain and its phosphotyrosine-independent interaction with DLC-1
Plos One, 6, 2011
7DR8
DownloadVisualize
BU of 7dr8 by Molmil
Crystal structure of MERS-CoV 3CL protease in spacegroup P212121
Descriptor: 3C-like proteinase
Authors:Zhang, Y.T, Gao, H.X, Zhou, H, Zhong, F.L, Hu, X.H, Zhou, X.L, Lin, C, Wang, Q.S, Li, J, Zhang, J.
Deposit date:2020-12-26
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.338149 Å)
Cite:Crystal structure of MERS-CoV 3CL protease in spacegroup P212121
To Be Published
3BK3
DownloadVisualize
BU of 3bk3 by Molmil
Crystal structure of the complex of BMP-2 and the first Von Willebrand domain type C of Crossveinless-2
Descriptor: Bone morphogenetic protein 2, Crossveinless 2
Authors:Mueller, T.D, Sebald, W, Zhang, J.-L.
Deposit date:2007-12-05
Release date:2008-05-27
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure analysis reveals how the Chordin family member crossveinless 2 blocks BMP-2 receptor binding
Dev.Cell, 14, 2008
7DRA
DownloadVisualize
BU of 7dra by Molmil
Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121,pH 9.0
Descriptor: 3C-like proteinase
Authors:Zhang, Y.T, Zhou, X.L, Li, J, Zhang, J.
Deposit date:2020-12-27
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.784097 Å)
Cite:Crystal structure of MERS-CoV 3CL protease (C148A) in spacegroup P212121,pH 9.0
To Be Published
5GO0
DownloadVisualize
BU of 5go0 by Molmil
Solution structure of nedd8 from Trypanosoma brucei
Descriptor: Ubiquitin, putative
Authors:Wang, R, Liao, S, Zhang, J, Tu, X.
Deposit date:2016-07-25
Release date:2017-07-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of nedd8 from Trypanosoma brucei
To Be Published
2LI6
DownloadVisualize
BU of 2li6 by Molmil
1H, 13C, and 15N Chemical Shift Assignments for yeast protein
Descriptor: SWI/SNF chromatin-remodeling complex subunit SWI1
Authors:Wang, T, Zhang, J, Tu, X.
Deposit date:2011-08-24
Release date:2012-04-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of SWI1 ARID domain from Saccharomyces cerevisiae and its non-specific binding to DNA
Proteins, 2012
4GSB
DownloadVisualize
BU of 4gsb by Molmil
Monoclinic crystal form of the apo-ERK2
Descriptor: GLYCEROL, Mitogen-activated protein kinase 1, SULFATE ION, ...
Authors:Pozharski, E, Zhang, J, Shapiro, P.
Deposit date:2012-08-27
Release date:2012-09-12
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Monoclinic crystal form of the apo-ERK2
TO BE PUBLISHED
2MN4
DownloadVisualize
BU of 2mn4 by Molmil
NMR solution structure of a computational designed protein based on structure template 1cy5
Descriptor: Computational designed protein based on structure template 1cy5
Authors:Xiong, P, Wang, M, Zhang, J, Chen, Q, Liu, H.
Deposit date:2014-03-28
Release date:2014-10-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability
Nat Commun, 5, 2014
2MLB
DownloadVisualize
BU of 2mlb by Molmil
NMR solution structure of a computational designed protein based on template of human erythrocytic ubiquitin
Descriptor: redesigned ubiquitin
Authors:Xiong, P, Wang, M, Zhang, J, Chen, Q, Liu, H.
Deposit date:2014-02-21
Release date:2014-10-29
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Protein design with a comprehensive statistical energy function and boosted by experimental selection for foldability
Nat Commun, 5, 2014
3QFM
DownloadVisualize
BU of 3qfm by Molmil
Crystal structure of Streptococcal asymmetric Ap4A hydrolase and phosphodiesterase Spr1479/SapH
Descriptor: FE (III) ION, MANGANESE (II) ION, Putative uncharacterized protein
Authors:Jiang, Y.L, Zhang, J.W, Yu, W.L, Cheng, W, Zhang, C.C, Zhou, C.Z, Chen, Y.
Deposit date:2011-01-22
Release date:2011-08-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and enzymatic characterization of a Streptococcal ATP/diadenosine polyphosphate and phosphodiester hydrolase Spr1479/SapH
To be Published
3RPM
DownloadVisualize
BU of 3rpm by Molmil
Crystal structure of the first GH20 domain of a novel Beta-N-acetyl-hexosaminidase StrH from Streptococcus pneumoniae R6
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-N-acetyl-hexosaminidase, PENTAETHYLENE GLYCOL
Authors:Jiang, Y.L, Yu, W.L, Zhang, J.W.
Deposit date:2011-04-27
Release date:2011-10-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the substrate specificity of a novel beta-N-acetylhexosaminidase StrH protein from Streptococcus pneumoniae R6
J.Biol.Chem., 286, 2011
3VI0
DownloadVisualize
BU of 3vi0 by Molmil
Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin
Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, 3-O-sulfo-beta-D-galactopyranose-(1-6)-alpha-D-mannopyranose-(1-2)-alpha-D-glucopyranose, Bacteriorhodopsin, ...
Authors:Kouyama, T, Zhang, J.
Deposit date:2011-09-13
Release date:2012-06-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin
Proteins, 80, 2012
5YTE
DownloadVisualize
BU of 5yte by Molmil
Large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with with natural dT:dATP base pair
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*AP*AP*AP*TP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3'), ...
Authors:Zeng, H, Mondal, M, Song, R.Y, Zhang, J, Xia, B, Gao, Y.Q, Yi, C.Q.
Deposit date:2017-11-17
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Unnatural Cytosine Bases Recognized as Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry.
Angew. Chem. Int. Ed. Engl., 58, 2019
5YBB
DownloadVisualize
BU of 5ybb by Molmil
Structural basis underlying complex assembly andconformational transition of the type I R-M system
Descriptor: DNA, Restriction endonuclease S subunits, S-ADENOSYLMETHIONINE, ...
Authors:Liu, Y.P, Tang, Q, Zhang, J.Z, Tian, L.F, Gao, P, Yan, X.X.
Deposit date:2017-09-04
Release date:2017-11-29
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis underlying complex assembly and conformational transition of the type I R-M system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8H4Q
DownloadVisualize
BU of 8h4q by Molmil
Aspergillomarasmine A biosynthese complex with OPS
Descriptor: 2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID, Rhodanese domain-containing protein
Authors:Lu, M, Zhang, J, Wang, Z, Han, L.
Deposit date:2022-10-11
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Aspergillomarasmine A biosynthese complex with OPS
To Be Published
8H4H
DownloadVisualize
BU of 8h4h by Molmil
The apo structure of Aspergillomarasmine A synthetase
Descriptor: PYRIDOXAL-5'-PHOSPHATE, Rhodanese domain-containing protein
Authors:Lu, M, Zhang, J, Wang, Z, Han, L.
Deposit date:2022-10-10
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The apo structure of Aspergillomarasmine A synthetase at 2.3 Angstroms resolution
To Be Published

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon