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PDB: 205 results

3NI6
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Crystal structure of the FK506 binding domain of Plasmodium vivax FKBP35
Descriptor: 70 kDa peptidylprolyl isomerase, GLYCEROL
Authors:Qureshi, I.A, Yoon, H.S, Lescar, J.
Deposit date:2010-06-15
Release date:2011-04-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Structural insights into substrate binding by PvFKBP35, a peptidylprolyl cis-trans isomerase from the human malarial parasite Plasmodium vivax
EUKARYOTIC CELL, 12, 2013
3QY7
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Crystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases
Descriptor: FE (III) ION, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Kim, H.S, Lee, S.J, Yoon, H.J, An, D.R, Kim, D.J, Kim, S.-J, Suh, S.W.
Deposit date:2011-03-03
Release date:2011-06-08
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structures of YwqE from Bacillus subtilis and CpsB from Streptococcus pneumoniae, unique metal-dependent tyrosine phosphatases.
J.Struct.Biol., 175, 2011
4JYS
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Crystal structure of FKBP25 from Plasmodium Vivax
Descriptor: CHLORIDE ION, IMIDAZOLE, Peptidyl-prolyl cis-trans isomerase
Authors:Sreekanth, R, Yoon, H.S.
Deposit date:2013-04-01
Release date:2014-02-12
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of Plasmodium vivax FK506-binding protein 25 reveals conformational changes responsible for its noncanonical activity
Proteins, 82, 2014
5XE2
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Endoribonuclease from Mycobacterial species
Descriptor: Endoribonuclease MazF4
Authors:Ahn, D.-H, Lee, K.-Y, Lee, S.J, Yoon, H.J, Kim, S.-J, Lee, B.-J.
Deposit date:2017-03-31
Release date:2017-10-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural analyses of the MazEF4 toxin-antitoxin pair in Mycobacterium tuberculosis provide evidence for a unique extracellular death factor.
J. Biol. Chem., 292, 2017
6AC9
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BU of 6ac9 by Molmil
Crystal structure of human Vaccinia-related kinase 1 (VRK1) in complex with AMP-PNP
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Ngow, Y.S, Sreekanth, R, Yoon, H.S.
Deposit date:2018-07-25
Release date:2018-12-26
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Crystal structure of human vaccinia-related kinase 1 in complex with AMP-PNP, a non-hydrolyzable ATP analog.
Protein Sci., 28, 2019
3CNO
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BU of 3cno by Molmil
GDP-bound structue of TM YlqF
Descriptor: GUANOSINE-5'-DIPHOSPHATE, Putative uncharacterized protein
Authors:Kim, D.J, Jang, J.Y, Yoon, H.-J, Suh, S.W.
Deposit date:2008-03-26
Release date:2008-06-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of YlqF, a circularly permuted GTPase: Implications for its GTPase activation in 50 S ribosomal subunit assembly
Proteins, 72, 2008
3CNL
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Crystal structure of GNP-bound YlqF from T. maritima
Descriptor: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Putative uncharacterized protein
Authors:Kim, D.J, Jang, J.Y, Yoon, H.-J, Suh, S.W.
Deposit date:2008-03-26
Release date:2008-06-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of YlqF, a circularly permuted GTPase: Implications for its GTPase activation in 50 S ribosomal subunit assembly
Proteins, 72, 2008
1WW6
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Agrocybe cylindracea galectin complexed with lactose
Descriptor: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
Authors:Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
Deposit date:2005-01-03
Release date:2005-08-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
1WW4
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Agrocybe cylindracea galectin complexed with NeuAca2-3lactose
Descriptor: N-acetyl-alpha-neuraminic acid-(2-3)-alpha-D-galactopyranose-(1-4)-alpha-D-glucopyranose, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
Authors:Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
Deposit date:2004-12-31
Release date:2005-08-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
5Y7X
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Human Peroxisome proliferator-activated receptor (PPAR) delta in complexed with a potent and selective agonist
Descriptor: 2-[2-methyl-4-[[4-methyl-2-[4-(trifluoromethyl)phenyl]-1,3-selenazol-5-yl]methylsulfanyl]phenoxy]ethanoic acid, CHLORIDE ION, POTASSIUM ION, ...
Authors:Kim, H.L, Chin, J.W, Cho, S.J, Song, J.Y, Yoon, H.S, Bae, J.H.
Deposit date:2017-08-18
Release date:2018-08-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:Design, synthesis, and the X-ray co-crystal structure of Highly Potent, Selective, and Orally Bioavailable, Novel Peroxisome Proliferator-Activated Receptor delta Agonists
To Be Published
1WW5
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Agrocybe cylindracea galectin complexed with 3'-sulfonyl lactose
Descriptor: 3-O-sulfo-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, galectin
Authors:Ban, M, Yoon, H.J, Demirkan, E, Utsumi, S, Mikami, B, Yagi, F.
Deposit date:2005-01-03
Release date:2005-08-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of a Fungal Galectin from Agrocybe cylindracea for Recognizing Sialoconjugate
J.Mol.Biol., 351, 2005
4J4N
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BU of 4j4n by Molmil
Crystal structure of FK506 binding domain of plasmodium falciparum FKBP35 in complex with D44
Descriptor: FK506-binding protein (FKBP)-type peptidyl-propyl isomerase, N-(2-ethylphenyl)-2-(3H-imidazo[4,5-b]pyridin-2-ylsulfanyl)acetamide
Authors:Sreekanth, R, Harikishore, A, Yoon, H.S.
Deposit date:2013-02-07
Release date:2013-09-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Small molecule Plasmodium FKBP35 inhibitor as a potential antimalaria agent.
Sci Rep, 3, 2013
4QVF
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BU of 4qvf by Molmil
Crystal structure of Bcl-xL in complex with BIM BH3 domain
Descriptor: Bcl-2-like protein 1, Peptide from Bcl-2-like protein 11
Authors:Sreekanth, R, Yoon, H.S.
Deposit date:2014-07-15
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.531 Å)
Cite:Bh3 induced conformational changes in Bcl-Xl revealed by crystal structure and comparative analysis.
Proteins, 83, 2015
4QVE
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BU of 4qve by Molmil
Crystal structure of Bcl-xL in complex with BID BH3 domain
Descriptor: Bcl-2-like protein 1, IMIDAZOLE, Peptide from BH3-interacting domain death agonist
Authors:Sreekanth, R, Yoon, H.S.
Deposit date:2014-07-14
Release date:2015-06-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Bh3 induced conformational changes in Bcl-Xl revealed by crystal structure and comparative analysis.
Proteins, 83, 2015
5D75
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BU of 5d75 by Molmil
Crystal structure of Human FKBD25 in complex with FK506
Descriptor: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500), Peptidyl-prolyl cis-trans isomerase FKBP3
Authors:Rajan, S, Prakash, A, Yoon, H.S.
Deposit date:2015-08-13
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Crystal structure of the FK506 binding domain of human FKBP25 in complex with FK506.
Protein Sci., 25, 2016
2KTY
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BU of 2kty by Molmil
Solution Structure of human Vaccinia Related Kinase-1
Descriptor: Serine/threonine-protein kinase VRK1
Authors:Shin, J, Yoon, H.
Deposit date:2010-02-10
Release date:2011-02-16
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of human Vaccinia-Related Kinase 1
To be Published
2KUL
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BU of 2kul by Molmil
Solution structure of human vaccinia related kinase 1(VRK1)
Descriptor: Serine/threonine-protein kinase VRK1
Authors:Shin, J, Yoon, H.
Deposit date:2010-02-19
Release date:2011-02-23
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of human vaccinia related kinase 1(VRK1)
To be Published
5WXE
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BU of 5wxe by Molmil
Highly disulfide-constrained antifeedant jasmintides from Jasminum sambac flowers
Descriptor: jasmintide js3
Authors:Kumari, G, Wong, K.H, Serra, A, Shin, J, Yoon, H.S, Sze, S.K, James, P.T.
Deposit date:2017-01-07
Release date:2018-01-17
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Highly disulfide-constrained antifeedant jasmintides from Jasminum sambac flowers
To Be Published
1TFI
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BU of 1tfi by Molmil
A NOVEL ZN FINGER MOTIF IN THE BASAL TRANSCRIPTIONAL MACHINERY: THREE-DIMENSIONAL NMR STUDIES OF THE NUCLEIC-ACID BINDING DOMAIN OF TRANSCRIPTIONAL ELONGATION FACTOR TFIIS
Descriptor: TRANSCRIPTIONAL ELONGATION FACTOR SII, ZINC ION
Authors:Qian, X, Gozani, S, Yoon, H.S, Jeon, C.J, Agarwal, K, Weiss, M.A.
Deposit date:1993-04-27
Release date:1993-10-31
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Novel zinc finger motif in the basal transcriptional machinery: three-dimensional NMR studies of the nucleic acid binding domain of transcriptional elongation factor TFIIS.
Biochemistry, 32, 1993
2LAV
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BU of 2lav by Molmil
NMR solution structure of human Vaccinia-Related Kinase 1
Descriptor: Vaccinia-related kinase 1
Authors:Shin, J, Yoon, H.S.
Deposit date:2011-03-21
Release date:2011-05-04
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR Solution Structure of Human Vaccinia-related Kinase 1 (VRK1) Reveals the C-terminal Tail Essential for Its Structural Stability and Autocatalytic Activity.
J.Biol.Chem., 286, 2011
4E1Y
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BU of 4e1y by Molmil
Alginate lyase A1-III H192A apo form
Descriptor: Alginate lyase
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-03-07
Release date:2012-04-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
3PA7
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BU of 3pa7 by Molmil
Crystal structure of FKBP from plasmodium vivax in complex with tetrapeptide ALPF
Descriptor: 4-mer Peptide ALPF, 70 kDa peptidylprolyl isomerase, putative
Authors:Balakrishna, A.M, Alag, R, Yoon, H.S.
Deposit date:2010-10-18
Release date:2012-02-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Structural insights into substrate binding by PvFKBP35, a peptidylprolyl cis-trans isomerase from the human malarial parasite Plasmodium vivax
EUKARYOTIC CELL, 12, 2013
4F13
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Alginate lyase A1-III Y246F complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-06
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.208 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
4F10
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Alginate lyase A1-III H192A complexed with tetrasaccharide
Descriptor: 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
Authors:Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K.
Deposit date:2012-05-05
Release date:2012-06-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
2N5Q
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Solution structure of cystein-rich peptide jS1 from Jasminum sambac
Descriptor: cysteine-rich peptide jS1
Authors:Shin, J, Kumari, G, Serra, A, Nguyen, P.Q.T, Yoon, H, Tam, J.P.
Deposit date:2015-07-24
Release date:2016-07-27
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Identification of a cysteine-rich peptide family with unusual disulfide connectivity from Jasminum sambac
To be Published

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