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PDB: 78 件

5VPE
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BU of 5vpe by Molmil
Transcription factor FosB/JunD bZIP domain in complex with cognate DNA, type-I crystal
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*GP*TP*CP*GP*GP*TP*GP*AP*CP*TP*CP*AP*CP*CP*GP*AP*CP*G)-3'), ...
著者Yin, Z, Machius, M, Rudenko, G.
登録日2017-05-04
公開日2017-09-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.053 Å)
主引用文献Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017
5EJK
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BU of 5ejk by Molmil
Crystal structure of the Rous sarcoma virus intasome
分子名称: DNA (5'-D(*AP*AP*TP*GP*TP*TP*GP*TP*CP*TP*TP*AP*TP*GP*CP*AP*AP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*AP*GP*TP*GP*TP*CP*TP*T)-3'), DNA (5'-D(*CP*TP*TP*CP*TP*CP*TP*C)-3'), ...
著者Yin, Z, Shi, K, Banerjee, S, Aihara, H.
登録日2015-11-02
公開日2016-02-17
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Crystal structure of the Rous sarcoma virus intasome.
Nature, 530, 2016
7AK6
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BU of 7ak6 by Molmil
Cryo-EM structure of ND6-P25L mutant respiratory complex I from Mus musculus at 3.8 A
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Yin, Z, Bridges, H.R, Grba, D, Hirst, J.
登録日2020-09-29
公開日2021-02-03
最終更新日2021-02-10
実験手法ELECTRON MICROSCOPY (3.82 Å)
主引用文献Structural basis for a complex I mutation that blocks pathological ROS production.
Nat Commun, 12, 2021
7AK5
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BU of 7ak5 by Molmil
Cryo-EM structure of respiratory complex I in the deactive state from Mus musculus at 3.2 A
分子名称: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Yin, Z, Bridges, H.R, Grba, D, Hirst, J.
登録日2020-09-29
公開日2021-02-03
最終更新日2021-02-10
実験手法ELECTRON MICROSCOPY (3.17 Å)
主引用文献Structural basis for a complex I mutation that blocks pathological ROS production.
Nat Commun, 12, 2021
4BAC
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BU of 4bac by Molmil
prototype foamy virus strand transfer complexes on product DNA
分子名称: 5'-D(*AP*GP*GP*AP*GP*CP*CP*AP*AP*GP*AP*CP*GP*GP *AP*TP*CP)-3', 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP *TP*TP*GP*TP*AP)-3', DNA (38-MER), ...
著者Yin, Z, Lapkouski, M, Yang, W, Craigie, R.
登録日2012-09-12
公開日2012-10-10
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.263 Å)
主引用文献Assembly of Prototype Foamy Virus Strand Transfer Complexes on Product DNA Bypassing Catalysis of Integration.
Protein Sci., 21, 2012
6P19
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BU of 6p19 by Molmil
Q21 transcription antitermination complex: loaded complex
分子名称: DNA (123-MER) fragment carrying phage-21 pR' promoter, pause element, and transcribed region, ...
著者Yin, Z, Ebright, R.H.
登録日2019-05-19
公開日2019-06-26
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Structural basis of Q-dependent antitermination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6P18
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BU of 6p18 by Molmil
Q21 transcription antitermination complex: loading complex
分子名称: DNA (67-MER) fragment carrying phage-21 pR' promoter and pause element, nontemplate strand, template strand, ...
著者Yin, Z, Ebright, R.H.
登録日2019-05-19
公開日2019-06-26
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural basis of Q-dependent antitermination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6P1B
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BU of 6p1b by Molmil
Transcription antitermination factor Q21
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Q protein
著者Yin, Z, Ebright, R.H.
登録日2019-05-19
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.942 Å)
主引用文献Structural basis of Q-dependent antitermination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6P1A
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BU of 6p1a by Molmil
Transcription antitermination factor Q21 in complex with Q21-binding-element DNA
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*TP*TP*GP*CP*TP*CP*AP*TP*TP*TP*GP*CP*TP*CP*AP*AP*TP*GP*AP*G)-3'), ...
著者Yin, Z, Ebright, R.H.
登録日2019-05-19
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.837 Å)
主引用文献Structural basis of Q-dependent antitermination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6P1C
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BU of 6p1c by Molmil
Transcription antitermination factor Q21, SeMet-derivative
分子名称: CHLORIDE ION, Q protein
著者Yin, Z, Ebright, R.H.
登録日2019-05-19
公開日2019-06-26
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (2.005 Å)
主引用文献Structural basis of Q-dependent antitermination.
Proc.Natl.Acad.Sci.USA, 116, 2019
6UCM
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BU of 6ucm by Molmil
Transcription factor DeltaFosB bZIP domain self-assembly, type-II crystal
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Protein fosB
著者Yin, Z, Machius, M, Rudenko, G.
登録日2019-09-16
公開日2020-01-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.424 Å)
主引用文献Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
6UCL
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BU of 6ucl by Molmil
Transcription factor deltaFosB bZIP domain self-assembly, type-I crystal
分子名称: CHLORIDE ION, Protein fosB
著者Yin, Z, Machius, M, Rudenko, G.
登録日2019-09-16
公開日2020-01-15
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.207 Å)
主引用文献Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
6UCI
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BU of 6uci by Molmil
Transcription factor DeltaFosB bZIP domain self-assembly, oxidized form
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Protein fosB
著者Yin, Z, Machius, M, Rudenko, G.
登録日2019-09-16
公開日2020-01-15
最終更新日2020-07-01
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Self-assembly of the bZIP transcription factor Delta FosB.
Curr Res Struct Biol, 2, 2020
8QJ7
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BU of 8qj7 by Molmil
Cryo-EM structure of human DNA polymerase alpha-primase in pre-initiation stage 1
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ...
著者Yin, Z, Pellegrini, L.
登録日2023-09-12
公開日2024-02-21
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献CryoEM insights into RNA primer synthesis by the human primosome.
Febs J., 291, 2024
4HCO
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BU of 4hco by Molmil
Human Plk1-PBD in complex with Thymoquinone at the phophopeptide binding site
分子名称: 2-methyl-5-(1-methylethyl)cyclohexa-2,5-diene-1,4-dione, GLYCEROL, Serine/threonine-protein kinase PLK1
著者Yin, Z, Rehse, P.H.
登録日2012-10-01
公開日2012-10-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Thymoquinone Blocks pSer/pThr Recognition by Plk1 Polo-Box Domain As a Phosphate Mimic
Acs Chem.Biol., 8, 2013
4H5X
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BU of 4h5x by Molmil
human Plk1-PBD with a glycerol bound at the phophopeptide binding site
分子名称: GLYCEROL, Serine/threonine-protein kinase PLK1
著者Yin, Z, Rehse, P.H.
登録日2012-09-19
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Thymoquinone Blocks pSer/pThr Recognition by Plk1 Polo-Box Domain As a Phosphate Mimic
Acs Chem.Biol., 8, 2013
4H71
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BU of 4h71 by Molmil
Human Plk1-PBD in complex with Poloxime ((E)-4-(hydroxyimino)-2-isopropyl-5-methylcyclohexa-2,5-dienone)
分子名称: 2-methyl-5-(1-methylethyl)cyclohexa-2,5-diene-1,4-dione 1-oxime, GLYCEROL, Serine/threonine-protein kinase PLK1
著者Yin, Z, Rehse, P.H.
登録日2012-09-19
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Thymoquinone Blocks pSer/pThr Recognition by Plk1 Polo-Box Domain As a Phosphate Mimic
Acs Chem.Biol., 8, 2013
4K3M
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BU of 4k3m by Molmil
E.coli sliding clamp in complex with AcALDLF peptide
分子名称: ALDLF, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-11
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3O
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BU of 4k3o by Molmil
E. coli sliding clamp in complex with AcQADLF
分子名称: (ACE)QADLF, 1,2-ETHANEDIOL, CALCIUM ION, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-11
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3K
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BU of 4k3k by Molmil
E. Coli sliding clamp in complex with (S)-2-(4-methylpentanamido)-3-phenylpropanoic acid
分子名称: CALCIUM ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-10
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3R
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BU of 4k3r by Molmil
E. coli sliding clamp in complex with AcQLDLA
分子名称: (ACE)QLDLA, CALCIUM ION, CHLORIDE ION, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-11
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3L
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BU of 4k3l by Molmil
E. coli sliding clamp in complex with AcLF dipeptide
分子名称: 1,2-ETHANEDIOL, ACETYL GROUP, CALCIUM ION, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-10
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3S
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BU of 4k3s by Molmil
E. coli sliding clamp in P1 crystal space group
分子名称: CALCIUM ION, DNA polymerase III subunit beta, O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-11
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
4K3Q
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BU of 4k3q by Molmil
E. coli sliding clamp in complex with AcQLDAF
分子名称: (ACE)QLDAF, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Yin, Z, Oakley, A.J.
登録日2013-04-11
公開日2013-05-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp
J.Med.Chem., 56, 2013
5VPC
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BU of 5vpc by Molmil
Transcription factor FosB/JunD bZIP domain in its oxidized form, type-II crystal
分子名称: CHLORIDE ION, Protein fosB, SODIUM ION, ...
著者Yin, Z, Machius, M.C, Rudenko, G.
登録日2017-05-04
公開日2017-09-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.498 Å)
主引用文献Activator Protein-1: redox switch controlling structure and DNA-binding.
Nucleic Acids Res., 45, 2017

 

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