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PDB: 125 件

7POW
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BU of 7pow by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in transition state.
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2-amino-3-[[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]oxy-[(2R)-2,3-bis[[(Z)-octadec-9-enoyl]oxy]propoxy]-dihydroxy-lambda^5-phosphanyl]oxy-propanoic acid, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, ...
著者Yildiz, O, Centola, M.
登録日2021-09-10
公開日2021-12-08
最終更新日2023-03-01
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
1WA9
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Crystal Structure of the PAS repeat region of the Drosophila clock protein PERIOD
分子名称: PERIOD CIRCADIAN PROTEIN
著者Yildiz, O, Doi, M, Yujnovsky, I, Cardone, L, Berndt, A, Hennig, S, Schulze, S, Urbanke, C, Sassone-Corsi, P, Wolf, E.
登録日2004-10-25
公開日2005-01-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Crystal Structure and Interactions of the Pas Repeat Region of the Drosophila Clock Protein Period
Mol.Cell, 17, 2005
3GEC
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BU of 3gec by Molmil
Crystal structure of a tandem PAS domain fragment of Drosophila PERIOD
分子名称: Period circadian protein
著者Yildiz, O, Wolf, E.
登録日2009-02-25
公開日2009-06-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Structural and functional analyses of PAS domain interactions of the clock proteins Drosophila PERIOD and mouse PERIOD2
Plos Biol., 7, 2009
2J9D
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BU of 2j9d by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
分子名称: ACETATE ION, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ...
著者Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
登録日2006-11-07
公開日2007-01-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
2IWV
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BU of 2iwv by Molmil
Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
分子名称: CALCIUM ION, LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE PROTEIN G, ...
著者Yildiz, O, Vinothkumar, K.R, Goswami, P, Kuehlbrandt, W.
登録日2006-07-04
公開日2006-08-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
Embo J., 25, 2006
2IWW
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BU of 2iww by Molmil
Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, OUTER MEMBRANE PROTEIN G, beta-D-glucopyranose, ...
著者Yildiz, O, Vinothkumar, K.R, Goswami, P, Kuehlbrandt, W.
登録日2006-07-05
公開日2006-08-14
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the Monomeric Outer-Membrane Porin Ompg in the Open and Closed Conformation.
Embo J., 25, 2006
2J9C
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BU of 2j9c by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
分子名称: 1,2-ETHANEDIOL, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
登録日2006-11-07
公開日2007-01-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
2J9E
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BU of 2j9e by Molmil
Structure of GlnK1 with bound effectors indicates regulatory mechanism for ammonia uptake
分子名称: 2-OXOGLUTARIC ACID, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Yildiz, O, Kalthoff, C, Raunser, S, Kuehlbrandt, W.
登録日2006-11-07
公開日2007-01-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Structure of Glnk1 with Bound Effectors Indicates Regulatory Mechanism for Ammonia Uptake.
Embo J., 26, 2007
6F36
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Polytomella Fo model
分子名称: Mitochondrial ATP synthase subunit 6, Mitochondrial ATP synthase subunit ASA6, Mitochondrial ATP synthase subunit c
著者Yildiz, O, Kuehlbrandt, W, Klusch, N, Murphy, B.J, Mills, D.J.
登録日2017-11-28
公開日2017-12-20
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis of proton translocation and force generation in mitochondrial ATP synthase.
Elife, 6, 2017
7B1N
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BU of 7b1n by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
分子名称: 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, CDP-diacylglycerol--serine O-phosphatidyltransferase, ...
著者Yildiz, O, Centola, M.
登録日2020-11-25
公開日2021-12-08
最終更新日2022-10-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
7B1K
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BU of 7b1k by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, ...
著者Yildiz, O, Centola, M.
登録日2020-11-25
公開日2021-12-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
7B1L
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BU of 7b1l by Molmil
Crystal structure of phosphatidyl serine synthase (PSS) in the closed conformation with bound citrate.
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine, CALCIUM ION, ...
著者Yildiz, O, Centola, M.
登録日2020-11-25
公開日2021-12-08
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structures of phosphatidyl serine synthase PSS reveal the catalytic mechanism of CDP-DAG alcohol O-phosphatidyl transferases
Nat Commun, 12, 2021
4V1F
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BU of 4v1f by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Bedaquiline
分子名称: Bedaquiline, F0F1 ATP SYNTHASE SUBUNIT C, octyl beta-D-glucopyranoside
著者Preiss, L, Yildiz, O, Meier, T.
登録日2014-09-26
公開日2015-05-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.697 Å)
主引用文献Structure of the mycobacterial ATP synthase Fo rotor ring in complex with the anti-TB drug bedaquiline.
Sci Adv, 1, 2015
4V1G
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BU of 4v1g by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring
分子名称: F0F1 ATP SYNTHASE SUBUNIT C, octyl beta-D-glucopyranoside
著者Preiss, L, Yildiz, O, Meier, T.
登録日2014-09-26
公開日2015-05-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure of the Mycobacterial ATP Synthase Fo Rotor Ring in Complex with the Anti-Tb Drug Bedaquiline.
Sci.Adv., 1, 2015
3ZO6
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BU of 3zo6 by Molmil
Crystal structure of Bacillus pseudofirmus OF4 mutant ATP synthase c12 ring.
分子名称: ATP synthase subunit c
著者Preiss, L, Yildiz, O, Meier, T.
登録日2013-02-20
公開日2013-05-01
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (4.104 Å)
主引用文献The c-ring stoichiometry of ATP synthase is adapted to cell physiological requirements of alkaliphilic Bacillus pseudofirmus OF4.
Proc. Natl. Acad. Sci. U.S.A., 110, 2013
3ZK1
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BU of 3zk1 by Molmil
Crystal structure of the sodium binding rotor ring at pH 5.3
分子名称: ATP SYNTHASE SUBUNIT C, DECYL-BETA-D-MALTOPYRANOSIDE, DODECYL-BETA-D-MALTOSIDE, ...
著者Schulz, S, Meier, T, Yildiz, O.
登録日2013-01-21
公開日2013-05-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献A New Type of Na(+)-Driven ATP Synthase Membrane Rotor with a Two-Carboxylate Ion-Coupling Motif.
Plos Biol., 11, 2013
4V1H
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BU of 4v1h by Molmil
Crystal structure of a mycobacterial ATP synthase rotor ring in complex with Iodo-Bedaquiline
分子名称: F0F1 ATP SYNTHASE SUBUNIT C, IODO-BEDAQUILINE, TRIS(HYDROXYETHYL)AMINOMETHANE
著者Preiss, L, Yildiz, O, Meier, T.
登録日2014-09-26
公開日2016-01-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the Mycobacterial ATP Synthase Fo Rotor Ring in Complex with Iodo-Bedaquiline
To be Published
5LY6
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BU of 5ly6 by Molmil
CryoEM structure of the membrane pore complex of Pneumolysin at 4.5A
分子名称: Pneumolysin
著者van Pee, K, Neuhaus, A, D'Imprima, E, Mills, D.J, Kuehlbrandt, W, Yildiz, O.
登録日2016-09-24
公開日2017-04-05
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献CryoEM structures of membrane pore and prepore complex reveal cytolytic mechanism of Pneumolysin.
Elife, 6, 2017
5LI3
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BU of 5li3 by Molmil
Crystal structure of HDAC-like protein from P. aeruginosa in complex with a photo-switchable inhibitor.
分子名称: (2E)-N-hydroxy-3-{4-[(E)-(1,3,5-trimethyl-1H-pyrazol-4-yl)diazenyl]phenyl}prop-2-enamide, Acetoin utilization protein, POTASSIUM ION, ...
著者Kraemer, A, Meyer-Almes, F.J, Yildiz, O.
登録日2016-07-14
公開日2016-11-23
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Toward Photopharmacological Antimicrobial Chemotherapy Using Photoswitchable Amidohydrolase Inhibitors.
ACS Infect Dis, 3, 2017
8R34
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BU of 8r34 by Molmil
CryoEM structure of the symmetric Pho90 dimer from yeast with substrates.
分子名称: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, Low-affinity phosphate transporter PHO90, PHOSPHATE ION, ...
著者Schneider, S, Kuehlbrandt, W, Yildiz, O.
登録日2023-11-08
公開日2024-04-24
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.62 Å)
主引用文献Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism.
Structure, 32, 2024
3DDC
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BU of 3ddc by Molmil
Crystal Structure of NORE1A in Complex with RAS
分子名称: GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
著者Stieglitz, B, Bee, C, Schwarz, D, Yildiz, O, Moshnikova, A, Khokhlatchev, A, Herrmann, C.
登録日2008-06-05
公開日2008-07-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Novel type of Ras effector interaction established between tumour suppressor NORE1A and Ras switch II
Embo J., 27, 2008
8R33
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BU of 8r33 by Molmil
CryoEM structure of the symmetric Pho90 dimer from yeast without substrates.
分子名称: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, PHO90 isoform 1
著者Schneider, S, Kuehlbrandt, W, Yildiz, O.
登録日2023-11-08
公開日2024-04-24
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (2.29 Å)
主引用文献Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism.
Structure, 32, 2024
8R35
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CryoEM structure of the asymmetric Pho90 dimer from yeast without substrates.
分子名称: Low-affinity phosphate transporter PHO90
著者Schneider, S, Kuehlbrandt, W, Yildiz, O.
登録日2023-11-08
公開日2024-04-24
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Complementary structures of the yeast phosphate transporter Pho90 provide insights into its transport mechanism.
Structure, 32, 2024
3ZK2
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Crystal structure of the sodium binding rotor ring at pH 8.7
分子名称: ATP SYNTHASE SUBUNIT C, DECYL-BETA-D-MALTOPYRANOSIDE, SODIUM ION
著者Schulz, S, Meier, T, Yildiz, O.
登録日2013-01-21
公開日2013-05-29
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献A new type of Na(+)-driven ATP synthase membrane rotor with a two-carboxylate ion-coupling motif.
PLoS Biol., 11, 2013
5A1S
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Crystal structure of the sodium-dependent citrate symporter SeCitS form Salmonella enterica.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, CITRATE ANION, ...
著者Woehlert, D, Groetzinger, M.J, Kuhlbrandt, W, Yildiz, O.
登録日2015-05-05
公開日2016-02-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Mechanism of Na(+)-dependent citrate transport from the structure of an asymmetrical CitS dimer.
Elife, 4, 2015

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