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PDB: 688 results

2D3S
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Crystal Structure of basic winged bean lectin with Tn-antigen
Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Basic agglutinin, ...
Authors:Kulkarni, K.A, Sinha, S, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2005-10-01
Release date:2006-01-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for the specificity of basic winged bean lectin for the Tn-antigen: a crystallographic, thermodynamic and modelling study
Febs Lett., 579, 2005
9EPQ
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Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Descriptor: 11,20-Ethanoretinal, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Tejero, O, Pamula, F, Koyanagi, M, Nagata, T, Afanasyev, P, Das, I, Deupi, X, Sheves, M, Terakita, A, Schertler, G.F.X, Rodrigues, M.J, Tsai, C.-J.
Deposit date:2024-03-19
Release date:2024-10-23
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (4.15 Å)
Cite:Active state structures of a bistable visual opsin bound to G proteins.
Nat Commun, 15, 2024
2DTW
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Crystal Structure of basic winged bean lectin in complex with 2Me-O-D-Galactose
Descriptor: 2-O-methyl-alpha-D-galactopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kulkarni, K.A, Katiyar, S, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2006-07-18
Release date:2006-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the carbohydrate-specificity of basic winged-bean lectin and its differential affinity for Gal and GalNAc
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
1F9K
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WINGED BEAN ACIDIC LECTIN COMPLEXED WITH METHYL-ALPHA-D-GALACTOSE
Descriptor: ACIDIC LECTIN, CALCIUM ION, MANGANESE (II) ION, ...
Authors:Manoj, N, Srinivas, V.R, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2000-07-11
Release date:2001-07-11
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Carbohydrate specificity and salt-bridge mediated conformational change in acidic winged bean agglutinin.
J.Mol.Biol., 302, 2000
1FAY
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WINGED BEAN ACIDIC LECTIN COMPLEXED WITH METHYL-ALPHA-D-GALACTOSE (MONOCLINIC FORM)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACIDIC LECTIN, CALCIUM ION, ...
Authors:Manoj, N, Srinivas, V.R, Surolia, A, Vijayan, M, Suguna, K.
Deposit date:2000-07-14
Release date:2001-07-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Carbohydrate specificity and salt-bridge mediated conformational change in acidic winged bean agglutinin.
J.Mol.Biol., 302, 2000
4JND
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Structure of a C.elegans sex determining protein
Descriptor: Ca(2+)/calmodulin-dependent protein kinase phosphatase, MAGNESIUM ION
Authors:Feng, Y, Zhang, Y, Ge, J, Yang, M.
Deposit date:2013-03-15
Release date:2013-06-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Structural insight into Caenorhabditis elegans sex-determining protein FEM-2.
J.Biol.Chem., 288, 2013
4JDZ
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Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Descriptor: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
Authors:Wang, X, Ge, J, Yang, M.
Deposit date:2013-02-25
Release date:2013-06-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Protein Cell, 4, 2013
4JE0
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Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Descriptor: CALCIUM ION, Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
Authors:Wang, X, Ge, J, Yang, M.
Deposit date:2013-02-25
Release date:2013-06-19
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Protein Cell, 4, 2013
4L90
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Crystal structure of Human Hsp90 with RL3
Descriptor: Heat shock protein HSP 90-alpha, [5-(6-bromo[1,2,4]triazolo[4,3-a]pyridin-3-yl)-2,4-dihydroxyphenyl](4-methylpiperazin-1-yl)methanone
Authors:Li, J, Ren, J, Yang, M, Xiong, B, He, J.
Deposit date:2013-06-18
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal structure of Human Hsp90 with RL3
to be published
4L36
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Crystal structure of the cytochrome P450 enzyme TxtE
Descriptor: HEME B/C, IMIDAZOLE, Putative P450-like protein
Authors:Yu, F, Li, M.J, Xu, C.Y, Wang, Z.J, Zhou, H, Yang, M, Chen, Y.X, Tang, L, He, J.H.
Deposit date:2013-06-05
Release date:2013-12-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.104 Å)
Cite:Structural Insights into the Mechanism for Recognizing Substrate of the Cytochrome P450 Enzyme TxtE.
Plos One, 8, 2013
3UDC
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Crystal structure of a membrane protein
Descriptor: Small-conductance mechanosensitive channel, C-terminal peptide from Small-conductance mechanosensitive channel
Authors:Li, W, Ge, J, Yang, M.
Deposit date:2011-10-28
Release date:2012-10-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.355 Å)
Cite:Structure and molecular mechanism of an anion-selective mechanosensitive channel of small conductance
Proc.Natl.Acad.Sci.USA, 109, 2012
4L0K
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Crystal structure of a type II restriction endonuclease
Descriptor: DraIII
Authors:Zhuo, W, Ge, J, Yang, M.
Deposit date:2013-05-31
Release date:2014-05-14
Method:X-RAY DIFFRACTION (2.328 Å)
Cite:Elimination of inter-domain interactions increases the cleavage fidelity of the restriction endonuclease DraIII.
Protein Cell, 5, 2014
4L93
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Crystal structure of Human Hsp90 with S36
Descriptor: 3,4-dihydroisoquinolin-2(1H)-yl[2,4-dihydroxy-5-(propan-2-yl)phenyl]methanone, Heat shock protein HSP 90-alpha
Authors:Li, J, Ren, J, Yang, M, Xiong, B, He, J.
Deposit date:2013-06-18
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.845 Å)
Cite:Crystal structure of Human Hsp90 with S36
To be Published
1UJ1
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BU of 1uj1 by Molmil
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro)
Descriptor: 3C-like proteinase
Authors:Yang, H, Yang, M, Liu, Y, Bartlam, M, Ding, Y, Lou, Z, Sun, L, Zhou, Z, Ye, S, Anand, K, Pang, H, Gao, G.F, Hilgenfeld, R, Rao, Z.
Deposit date:2003-07-25
Release date:2003-11-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
Proc.Natl.Acad.Sci.USA, 100, 2003
1UK2
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Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH8.0
Descriptor: 3C-LIKE PROTEINASE
Authors:Yang, H, Yang, M, Liu, Y, Bartlam, M, Ding, Y, Lou, Z, Sun, L, Zhou, Z, Ye, S, Anand, K, Pang, H, Gao, G.F, Hilgenfeld, R, Rao, Z.
Deposit date:2003-08-14
Release date:2003-11-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
Proc.Natl.Acad.Sci.USA, 100, 2003
1UK3
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BU of 1uk3 by Molmil
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) At pH7.6
Descriptor: 3C-like proteinase
Authors:Yang, H, Yang, M, Liu, Y, Bartlam, M, Ding, Y, Lou, Z, Sun, L, Zhou, Z, Ye, S, Anand, K, Pang, H, Gao, G.F, Hilgenfeld, R, Rao, Z.
Deposit date:2003-08-14
Release date:2003-11-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
Proc.Natl.Acad.Sci.USA, 100, 2003
1UK4
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BU of 1uk4 by Molmil
Crystal structure of SARS Coronavirus Main Proteinase (3CLpro) Complexed With An Inhibitor
Descriptor: 3C-like proteinase nsp5, 5-mer peptide of inhibitor
Authors:Yang, H, Yang, M, Liu, Y, Bartlam, M, Ding, Y, Lou, Z, Sun, L, Zhou, Z, Ye, S, Anand, K, Pang, H, Gao, G.F, Hilgenfeld, R, Rao, Z.
Deposit date:2003-08-14
Release date:2003-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structures of severe acute respiratory syndrome virus main protease and its complex with an inhibitor
Proc.Natl.Acad.Sci.USA, 100, 2003
2DCH
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BU of 2dch by Molmil
Crystal structure of archaeal intron-encoded homing endonuclease I-Tsp061I
Descriptor: CHLORIDE ION, SULFATE ION, putative homing endonuclease
Authors:Nakayama, H, Tsuge, H, Shimamura, T, Miyano, M, Nomura, N, Sako, Y.
Deposit date:2006-01-06
Release date:2006-07-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structure of a hyperthermophilic archaeal homing endonuclease, I-Tsp061I: contribution of cross-domain polar networks to thermostability.
J.Mol.Biol., 365, 2007
2Q2P
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Beta-lactoglobulin (reverse native)
Descriptor: Beta-lactoglobulin
Authors:Vijayalakshmi, L, Krishna, R, Sankaranarayanan, R, Vijayan, M.
Deposit date:2007-05-29
Release date:2008-02-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.96 Å)
Cite:An asymmetric dimer of beta-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action.
Proteins, 71, 2007
2DM6
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BU of 2dm6 by Molmil
Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex
Descriptor: INDOMETHACIN, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent leukotriene B4 12-hydroxydehydrogenase, ...
Authors:Hori, T, Ishijima, J, Yokomizo, T, Ago, H, Shimizu, T, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-20
Release date:2006-11-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex reveals the structural basis of broad spectrum indomethacin efficacy
J.Biochem.(Tokyo), 140, 2006
2Z2J
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BU of 2z2j by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Mycobacterium tuberculosis
Descriptor: Peptidyl-tRNA hydrolase
Authors:Selvaraj, M, Roy, S, Singh, N.S, Sangeetha, R, Varshney, U, Vijayan, M.
Deposit date:2007-05-22
Release date:2007-07-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Plasticity and Enzyme Action: Crystal Structures of Mycobacterium tuberculosis Peptidyl-tRNA Hydrolase
J.Mol.Biol., 372, 2007
2Q2M
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BU of 2q2m by Molmil
Beta-lactoglobulin (native)
Descriptor: Beta-lactoglobulin
Authors:Vijayalakshmi, L, Krishna, R, Sankaranarayanan, R, Vijayan, M.
Deposit date:2007-05-29
Release date:2008-02-26
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An asymmetric dimer of beta-lactoglobulin in a low humidity crystal form-Structural changes that accompany partial dehydration and protein action.
Proteins, 71, 2007
7SXE
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BU of 7sxe by Molmil
Crystal structure of ligase I with nick duplexes containing cognate G:T
Descriptor: ADENOSINE MONOPHOSPHATE, DNA chain 1, DNA chain 2, ...
Authors:Tang, Q, Gulkis, M, McKenna, R, Caglayan, M.
Deposit date:2021-11-22
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of LIG1 that engage with mutagenic mismatches inserted by pol beta in base excision repair.
Nat Commun, 13, 2022
7SX5
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Crystal structure of ligase I with nick duplexes containing mismatch A:C
Descriptor: ADENOSINE MONOPHOSPHATE, DNA chain 1, DNA chain 2, ...
Authors:Tang, Q, Gulkis, M, McKenna, R, Caglayan, M.
Deposit date:2021-11-22
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structures of LIG1 that engage with mutagenic mismatches inserted by pol beta in base excision repair.
Nat Commun, 13, 2022
7SUM
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Crystal structure of human ligase I with nick duplexes containing cognate A:T
Descriptor: ADENOSINE MONOPHOSPHATE, DNA ligase 1, DNA(5'-*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*A-3'), ...
Authors:Tang, Q, Gulkis, M, McKenna, R, Caglayan, M.
Deposit date:2021-11-17
Release date:2022-07-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of LIG1 that engage with mutagenic mismatches inserted by pol beta in base excision repair.
Nat Commun, 13, 2022

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