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PDB: 51 件
1RCH
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SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES
分子名称: RIBONUCLEASE HI
著者Yamazaki, T, Fujiwara, M, Kato, T, Yamasaki, K, Nagayama, K.
登録日1995-06-23
公開日1997-02-12
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of Ribonuclease Hi from Escherichia Coli
Biol.Pharm.Bull., 23, 2000
1IRZ
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Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
分子名称: ARR10-B
著者Yamazaki, T, Katoh, E, Hosoda, K, Mizuno, T.
登録日2001-10-25
公開日2003-02-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
PLANT CELL, 14, 2003
1C9F
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NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
分子名称: CASPASE-ACTIVATED DNASE
著者Yamazaki, T, Uegaki, K.
登録日1999-08-02
公開日2000-02-16
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the CAD domain of caspase-activated DNase and interaction with the CAD domain of its inhibitor.
J.Mol.Biol., 297, 2000
1JU8
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Solution structure of Leginsulin, a plant hormon
分子名称: Leginsulin
著者Yamazaki, T, Takaoka, M, Katoh, E, Hanada, K, Sakita, M, Sakata, K, Nishiuchi, Y, Hirano, H.
登録日2001-08-23
公開日2003-06-17
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献A possible physiological function and the tertiary structure of a 4-kDa peptide in legumes
EUR.J.BIOCHEM., 270, 2003
1BVE
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HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR, 28 STRUCTURES
分子名称: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
著者Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
登録日1996-01-16
公開日1996-08-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1BVG
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HIV-1 PROTEASE-DMP323 COMPLEX IN SOLUTION, NMR MINIMIZED AVERAGE STRUCTURE
分子名称: HIV-1 PROTEASE, [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO-5,6-BIS(HYDROXY)-[1,3-BIS([4-HYDROXYMETHYL-PHENYL]METHYL)-4,7-BIS(PHEN YLMETHYL)]-2H-1,3-DIAZEPINONE
著者Yamazaki, T, Hinck, A.P, Wang, Y.-X, Nicholson, L.K, Torchia, D.A, Wingfield, P, Stahl, S.J, Kaufman, J.D, Chang, C, Domaille, P.J, Lam, P.Y.S.
登録日1996-01-16
公開日1996-08-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Three-dimensional solution structure of the HIV-1 protease complexed with DMP323, a novel cyclic urea-type inhibitor, determined by nuclear magnetic resonance spectroscopy.
Protein Sci., 5, 1996
1C4L
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SOLUTION STRUCTURE OF AN RNA DUPLEX INCLUDING A C-U BASE-PAIR
分子名称: RNA (5'-R(*CP*CP*UP*GP*CP*GP*UP*CP*G)-3'), RNA (5'-R(*CP*GP*AP*CP*UP*CP*AP*GP*G)-3')
著者Tanaka, Y, Kojima, C, Yamazaki, T, Kodama, T.S, Yasuno, K, Miyashita, S, Ono, A.M, Ono, A.S, Kainosho, M, Kyogoku, Y.
登録日1999-08-30
公開日2000-08-09
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of an RNA duplex including a C-U base pair.
Biochemistry, 39, 2000
1AYG
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SOLUTION STRUCTURE OF CYTOCHROME C-552, NMR, 20 STRUCTURES
分子名称: CYTOCHROME C-552, HEME C
著者Hasegawa, J, Yoshida, T, Yamazaki, T, Sambongi, Y, Yu, Y, Igarashi, Y, Kodama, T, Yamazaki, K, Hakusui, H, Kyogoku, Y, Kobayashi, Y.
登録日1997-11-04
公開日1998-11-25
最終更新日2024-10-09
実験手法SOLUTION NMR
主引用文献Solution structure of thermostable cytochrome c-552 from Hydrogenobacter thermophilus determined by 1H-NMR spectroscopy.
Biochemistry, 37, 1998
8XZ2
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The structural model of a homodimeric D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria
分子名称: D-alanyl-D-alanine dipeptidase
著者Konuma, T, Takai, T, Tsuchiya, C, Nishida, M, Hashiba, M, Yamada, Y, Shirai, H, Motoda, Y, Nagadoi, A, Chikaishi, E, Akagi, K, Akashi, S, Yamazaki, T, Akutsu, H, Oe, A, Ikegami, T.
登録日2024-01-20
公開日2024-05-22
実験手法SOLUTION NMR
主引用文献Analysis of the homodimeric structure of a D-Ala-D-Ala metallopeptidase, VanX, from vancomycin-resistant bacteria.
Protein Sci., 33, 2024
6A2U
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Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase
分子名称: FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Glucose dehydrogenase, ...
著者Yoshida, H, Kojima, K, Yoshimatsu, K, Shiota, M, Yamazaki, T, Ferri, S, Tsugawa, W, Kamitori, S, Sode, K.
登録日2018-06-13
公開日2019-06-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein.
Acta Crystallogr D Struct Biol, 75, 2019
2RQF
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Solution structure of juvenile hormone binding protein from silkworm in complex with JH III
分子名称: Hemolymph juvenile hormone binding protein, methyl (2E,6E)-9-[(2R)-3,3-dimethyloxiran-2-yl]-3,7-dimethylnona-2,6-dienoate
著者Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T.
登録日2009-04-27
公開日2010-05-05
最終更新日2013-06-19
実験手法SOLUTION NMR
主引用文献Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori
Sci Rep, 1, 2011
2RS2
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1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex
分子名称: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1
著者Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M.
登録日2011-06-27
公開日2011-12-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
7D2O
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Solution structure of Gaussia Luciferase by NMR
分子名称: Luciferase
著者Kobayashi, N, Wu, N, Kuroda, Y, Yamazaki, T.
登録日2020-09-17
公開日2020-12-02
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Solution structure of Gaussia Luciferase with five disulfide bonds and identification of a putative coelenterazine binding cavity by heteronuclear NMR.
Sci Rep, 10, 2020
1DCJ
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SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION
分子名称: YHHP PROTEIN
著者Katoh, E, Hatta, T, Shindo, H, Mizuno, T, Yamazaki, T.
登録日1999-11-05
公開日2001-07-18
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献High precision NMR structure of YhhP, a novel Escherichia coli protein implicated in cell division.
J.Mol.Biol., 304, 2000
1IY6
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Solution structure of OMSVP3 variant, P14C/N39C
分子名称: OMSVP3
著者Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
登録日2002-07-23
公開日2003-03-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
1IY5
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Solution structure of wild type OMSVP3
分子名称: OMSVP3
著者Hemmi, H, Kumazaki, T, Yamazaki, T, Kojima, S, Yoshida, T, Kyogoku, Y, Katsu, M, Yokosawa, H, Miura, K, Kobayashi, Y.
登録日2002-07-23
公開日2003-03-11
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Inhibitory Specificity Change of Ovomucoid Third Domain of the Silver Pheasant upon Introduction of an Engineered Cys14-Cys39 Bond
BIOCHEMISTRY, 42, 2003
2RNO
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Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa
分子名称: Putative DNA-binding protein
著者Suzuki, R, Shindo, H, Tase, A, Yamazaki, T.
登録日2008-01-30
公開日2008-12-30
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa.
Proteins, 75, 2009
1IYG
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Solution structure of RSGI RUH-001, a Fis1p-like and CGI-135 homologous domain from a mouse cDNA
分子名称: Hypothetical protein (2010003O14)
著者Ohashi, W, Hirota, H, Yamazaki, T, Koshiba, S, Hamada, T, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-08-14
公開日2003-02-14
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of RSGI RUH-001, a Fis1p-like and CGI-135 homologous domain from a mouse cDNA
To be Published
1IRH
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The Solution Structure of The Third Kunitz Domain of Tissue Factor Pathway Inhibitor
分子名称: tissue factor pathway inhibitor
著者Mine, S, Yamazaki, T, Miyata, T, Hara, S, Kato, H.
登録日2001-10-02
公開日2002-02-06
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Structural mechanism for heparin-binding of the third Kunitz domain of human tissue factor pathway inhibitor.
Biochemistry, 41, 2002
1IRG
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES
分子名称: INTERFERON REGULATORY FACTOR-2
著者Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y.
登録日1997-11-25
公開日1998-03-18
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
1IRF
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
分子名称: INTERFERON REGULATORY FACTOR-2
著者Furui, J, Uegaki, K, Yamazaki, T, Shirakawa, M, Swindells, M.B, Harada, H, Taniguchi, T, Kyogoku, Y.
登録日1997-11-24
公開日1998-01-28
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
2RSD
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Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice
分子名称: E3 SUMO-protein ligase SIZ1, ZINC ION
著者Shindo, H, Tsuchiya, W, Suzuki, R, Yamazaki, T.
登録日2012-01-12
公開日2012-08-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2
Febs Lett., 586, 2012
2RRT
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Solution structure of Magnesium-bound form of calmodulin C-domain E104D/E140D mutant
分子名称: Calmodulin
著者Ohashi, W, Hirota, H, Yamazaki, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-04-27
公開日2011-05-25
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure and fluctuation of the Mg(2+)-bound form of calmodulin C-terminal domain
Protein Sci., 20, 2011
1K2G
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Structural basis for the 3'-terminal guanosine recognition by the group I intron
分子名称: 5'-R(*CP*AP*GP*AP*CP*UP*UP*CP*GP*GP*UP*CP*GP*CP*AP*GP*AP*GP*AP*UP*GP*G)-3'
著者Kitamura, Y, Muto, Y, Watanabe, S, Kim, I, Ito, T, Nishiya, Y, Sakamoto, K, Ohtsuki, T, Kawai, G, Watanabe, K, Hosono, K, Takaku, H, Katoh, E, Yamazaki, T, Inoue, T, Yokoyama, S.
登録日2001-09-27
公開日2002-05-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.
RNA, 8, 2002
3A1Z
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Crystal structure of juvenile hormone binding protein from silkworm
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Hemolymph juvenile hormone binding protein, ZINC ION
著者Suzuki, R, Fujimoto, Z, Shiotsuki, T, Momma, M, Tase, A, Yamazaki, T.
登録日2009-04-27
公開日2010-04-28
最終更新日2017-03-15
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP
Plos One, 8, 2013

 

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