Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 146 件

8DMG
DownloadVisualize
BU of 8dmg by Molmil
CYP102A1 in Closed Conformation
分子名称: 6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfanyl}-1H-benzimidazole, Bifunctional cytochrome P450/NADPH--P450 reductase, FLAVIN MONONUCLEOTIDE, ...
著者Su, M, Xu, H.
登録日2022-07-08
公開日2023-07-19
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献Insight into the conformational dynamics of cytochrome P450 CYP102A1 enzyme using Cryo-EM
To Be Published
8DME
DownloadVisualize
BU of 8dme by Molmil
CYP102A1 in Open Conformation
分子名称: 6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfanyl}-1H-benzimidazole, Bifunctional cytochrome P450/NADPH--P450 reductase, FLAVIN MONONUCLEOTIDE, ...
著者Su, M, Xu, H.
登録日2022-07-08
公開日2023-07-19
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献Insight into the conformational dynamics of cytochrome P450 CYP102A1 enzyme using Cryo-EM
To Be Published
1ZTD
DownloadVisualize
BU of 1ztd by Molmil
Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus
分子名称: Hypothetical Protein Pfu-631545-001
著者Fu, Z.-Q, Horanyi, P, Florence, Q, Liu, Z.-J, Chen, L, Lee, D, Habel, J, Xu, H, Nguyen, D, Chang, S.-H, Zhou, W, Zhang, H, Jenney Jr, F.E, Sha, B, Adams, M.W.W, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2005-05-26
公開日2005-06-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Hypothetical Protein Pfu-631545-001 From Pyrococcus furiosus
To be Published
1YB3
DownloadVisualize
BU of 1yb3 by Molmil
Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus
分子名称: UNKNOWN ATOM OR ION, hypothetical protein
著者Habel, J, Zhou, W, Chang, J, Zhao, M, Xu, H, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Horanyi, P, Florence, Q, Tempel, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-19
公開日2005-02-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Conserved hypothetical protein Pfu-178653-001 from Pyrococcus furiosus
To be published
1YBX
DownloadVisualize
BU of 1ybx by Molmil
Conserved hypothetical protein Cth-383 from Clostridium thermocellum
分子名称: Conserved hypothetical protein, UNKNOWN ATOM OR ION
著者Tempel, W, Chang, J, Zhao, M, Habel, J, Kataeva, I, Xu, H, Chen, L, Lee, D, Nguyen, J, Chang, S.-H, Horanyi, P, Florence, Q, Zhou, W, Lin, D, Zhang, H, Ljundahl, L, Liu, Z.-J, Rose, J, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-21
公開日2005-02-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Conserved hypothetical protein Cth-383 from Clostridium thermocellum
To be published
1YD7
DownloadVisualize
BU of 1yd7 by Molmil
Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus
分子名称: 2-keto acid:ferredoxin oxidoreductase subunit alpha, UNKNOWN ATOM OR ION
著者Horanyi, P, Florence, Q, Zhou, W, Chang, J, Zhao, M, Habel, J, Xu, H, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Tempel, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-23
公開日2005-02-08
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus
To be published
1YCY
DownloadVisualize
BU of 1ycy by Molmil
Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus
分子名称: Conserved hypothetical protein
著者Huang, L, Liu, Z.-J, Lee, D, Tempel, W, Chang, J, Zhao, M, Habel, J, Xu, H, Chen, L, Nguyen, D, Chang, S.-H, Horanyi, P, Florence, Q, Zhou, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-23
公開日2005-02-22
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conserved hypothetical protein Pfu-1806301-001 from Pyrococcus furiosus
To be published
1XG7
DownloadVisualize
BU of 1xg7 by Molmil
Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus
分子名称: hypothetical protein
著者Chang, J, Zhao, M, Horanyi, P, Xu, H, Yang, H, Liu, Z.-J, Chen, L, Zhou, W, Habel, J, Tempel, W, Lee, D, Lin, D, Chang, S.-H, Eneh, J.C, Hopkins, R.C, Jenney Jr, F.E, Lee, H.-S, Li, T, Poole II, F.L, Shah, C, Sugar, F.J, Chen, C.-Y, Arendall III, W.B, Richardson, J.S, Richardson, D.C, Rose, J.P, Adams, M.W.W, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-09-16
公開日2004-11-23
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Conserved hypothetical protein Pfu-877259-001 from Pyrococcus furiosus
To be published
1ZGH
DownloadVisualize
BU of 1zgh by Molmil
Methionyl-tRNA formyltransferase from Clostridium thermocellum
分子名称: Methionyl-tRNA formyltransferase, UNKNOWN ATOM OR ION
著者Yang, H, Kataeva, I, Xu, H, Zhao, M, Chang, J, Liu, Z, Chen, L, Tempel, W, Habel, J, Zhou, W, Lee, D, Lin, D, Chang, S, Arendall III, W.B, Richardson, J.S, Richardson, D.C, Rose, J.P, Wang, B, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2005-04-21
公開日2005-05-03
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Methionyl-tRNA formyltransferase from Clostridium thermocellum
To be published
1Y81
DownloadVisualize
BU of 1y81 by Molmil
Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus
分子名称: COENZYME A, THIOCYANATE ION, UNKNOWN ATOM OR ION, ...
著者Zhao, M, Chang, J, Habel, J, Xu, H, Chen, L, Lee, D, Nguyen, D, Chang, S.-H, Horanyi, P, Florence, Q, Tempel, W, Zhou, W, Lin, D, Zhang, H, Praissman, J, Jenney Jr, F.E, Adams, M.W.W, Liu, Z.-J, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-10
公開日2005-01-25
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus
To be published
1XRG
DownloadVisualize
BU of 1xrg by Molmil
Conserved hypothetical protein from Clostridium thermocellum Cth-2968
分子名称: Putative translation initiation inhibitor, yjgF family, UNKNOWN ATOM OR ION
著者Zhao, M, Chang, J, Habel, J, Kataeva, I, Xu, H, Chen, L, Lee, D, Nguyen, J, Chang, S.-H, Horanyi, P, Florence, Q, Zhou, W, Tempel, W, Lin, D, Zhang, H, Arendall III, W.B, Ljundahl, L, Liu, Z.-J, Rose, J, Richardson, J.S, Richardson, D.C, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-10-14
公開日2004-12-14
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Conserved hypothetical protein from Clostridium thermocellum Cth-2968
To be published
1XI6
DownloadVisualize
BU of 1xi6 by Molmil
Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001
分子名称: extragenic suppressor
著者Zhao, M, Chang, J.C, Zhou, W, Chen, L, Horanyi, P, Xu, H, Yang, H, Liu, Z.-J, Habel, J.E, Lee, D, Chang, S.-H, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-09-21
公開日2004-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Extragenic suppressor from Pyrococcus furiosus Pfu-1862794-001
To be published
1YBY
DownloadVisualize
BU of 1yby by Molmil
Conserved hypothetical protein Cth-95 from Clostridium thermocellum
分子名称: Translation elongation factor P, UNKNOWN ATOM OR ION
著者Zhao, M, Zhou, W, Chang, J, Habel, J, Kataeva, I, Xu, H, Chen, L, Lee, D, Nguyen, J, Chang, S.-H, Horanyi, P, Florence, Q, Tempel, W, Lin, D, Zhang, H, Ljundahl, L, Liu, Z.-J, Rose, J, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2004-12-21
公開日2005-02-01
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Conserved hypothetical protein Cth-95 from Clostridium thermocellum
To be published
7BER
DownloadVisualize
BU of 7ber by Molmil
SFX structure of the MyD88 TIR domain higher-order assembly (solved, rebuilt and refined using an identical protocol to the MicroED structure of the MyD88 TIR domain higher-order assembly)
分子名称: Myeloid differentiation primary response protein MyD88
著者Clabbers, M.T.B, Holmes, S, Muusse, T.W, Vajjhala, P, Thygesen, S.J, Malde, A.K, Hunter, D.J.B, Croll, T.I, Nanson, J.D, Rahaman, M.H, Aquila, A, Hunter, M.S, Liang, M, Yoon, C.H, Zhao, J, Zatsepin, N.A, Abbey, B, Sierecki, E, Gambin, Y, Darmanin, C, Kobe, B, Xu, H, Ve, T.
登録日2020-12-24
公開日2021-03-10
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography.
Nat Commun, 12, 2021
7BEQ
DownloadVisualize
BU of 7beq by Molmil
MicroED structure of the MyD88 TIR domain higher-order assembly
分子名称: Myeloid differentiation primary response protein MyD88
著者Clabbers, M.T.B, Holmes, S, Muusse, T.W, Vajjhala, P, Thygesen, S.J, Malde, A.K, Hunter, D.J.B, Croll, T.I, Nanson, J.D, Rahaman, M.H, Aquila, A, Hunter, M.S, Liang, M, Yoon, C.H, Zhao, J, Zatsepin, N.A, Abbey, B, Sierecki, E, Gambin, Y, Darmanin, C, Kobe, B, Xu, H, Ve, T.
登録日2020-12-24
公開日2021-03-10
最終更新日2024-01-31
実験手法ELECTRON CRYSTALLOGRAPHY (3 Å)
主引用文献MyD88 TIR domain higher-order assembly interactions revealed by microcrystal electron diffraction and serial femtosecond crystallography.
Nat Commun, 12, 2021
3C0F
DownloadVisualize
BU of 3c0f by Molmil
Crystal Structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source
分子名称: Uncharacterized protein AF_1514
著者Li, Y, Bahti, P, Shaw, N, Song, G, Yin, J, Zhu, J.-Y, Zhang, H, Xu, H, Wang, B.-C, Liu, Z.-J.
登録日2008-01-20
公開日2008-02-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.
Proteins, 71, 2008
5GW8
DownloadVisualize
BU of 5gw8 by Molmil
Crystal structure of a putative DAG-like lipase (MgMDL2) from Malassezia globosa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, ...
著者Xu, J, Xu, H, Liu, J.
登録日2016-09-09
公開日2017-09-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Malassezia globosa MgMDL2 lipase: Crystal structure and rational modification of substrate specificity.
Biochem. Biophys. Res. Commun., 488, 2017
4ORD
DownloadVisualize
BU of 4ord by Molmil
Crystal Structure of Zebra Fish Thioesterase Superfamily Member 2
分子名称: Thioesterase Superfamily Member 2
著者Yu, S.S, Li, H, Gao, F, Xu, H, Gong, W.M.
登録日2014-02-11
公開日2015-02-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure and Potential Physiological Role of Zebra Fish Thioesterase Superfamily Member 2 (fTHEM2)
To be Published
5CQR
DownloadVisualize
BU of 5cqr by Molmil
Dimerization of Elp1 is essential for Elongator complex assembly
分子名称: Elongator complex protein 1
著者Lin, Z, Xu, H, Li, F, Diao, W, Long, J, Shen, Y.
登録日2015-07-22
公開日2015-08-19
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.015 Å)
主引用文献Dimerization of elongator protein 1 is essential for Elongator complex assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
5CQS
DownloadVisualize
BU of 5cqs by Molmil
Dimerization of Elp1 is essential for Elongator complex assembly
分子名称: Elongator complex protein 1
著者Lin, Z, Xu, H, Li, F, Diao, W, Long, J, Shen, Y.
登録日2015-07-22
公開日2015-08-19
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Dimerization of elongator protein 1 is essential for Elongator complex assembly.
Proc.Natl.Acad.Sci.USA, 112, 2015
3O3K
DownloadVisualize
BU of 3o3k by Molmil
Crystal structure of AF1382 from Archaeoglobus fulgidus
分子名称: Uncharacterized protein AF_1382
著者Zhu, J.-Y, Zhao, M, Fu, Z.-Q, Yang, H, Chang, J, Xu, H, Chen, L, Rose, J.P, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2010-07-24
公開日2010-08-04
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the Archaeoglobus fulgidus orphan ORF AF1382 determined by sulfur SAD from a moderately diffracting crystal.
Acta Crystallogr.,Sect.D, 68, 2012
2PH7
DownloadVisualize
BU of 2ph7 by Molmil
Crystal structure of AF2093 from Archaeoglobus fulgidus
分子名称: Uncharacterized protein AF_2093
著者Chang, J.C, Yang, H, Hwang, J, Zhu, J, Chen, L, Fu, Z.-Q, Xu, H, Rose, J.P, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
登録日2007-04-10
公開日2007-05-08
最終更新日2018-01-24
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of AF2093 from Archaeoglobus fulgidus.
To be Published
2KRL
DownloadVisualize
BU of 2krl by Molmil
The ensemble of the solution global structures of the 102-nt ribosome binding structure element of the turnip crinkle virus 3' UTR RNA
分子名称: RNA (102-MER)
著者Zuo, X, Wang, J, Yu, P, Eyler, D, Xu, H, Starich, M, Tiede, D, Simon, A, Kasprzak, W, Schwieters, C, Shapiro, B.
登録日2009-12-18
公開日2011-02-09
最終更新日2024-05-01
実験手法SOLUTION NMR, SOLUTION SCATTERING
主引用文献Solution structure of the cap-independent translational enhancer and ribosome-binding element in the 3' UTR of turnip crinkle virus.
Proc.Natl.Acad.Sci.USA, 107, 2010
4ZRD
DownloadVisualize
BU of 4zrd by Molmil
Crystal structure of SMG1 F278N mutant
分子名称: GLYCEROL, LIP1, secretory lipase (Family 3), ...
著者Xu, J, Xu, H, Hou, S, Liu, J.
登録日2015-05-12
公開日2015-09-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of product-bound SMG1 lipase: active site gating implications.
Febs J., 282, 2015
4ZRE
DownloadVisualize
BU of 4zre by Molmil
Crystal structure of SMG1 F278D mutant
分子名称: CHLORIDE ION, LIP1, secretory lipase (Family 3), ...
著者Xu, J, Xu, H, Hou, S, Liu, J.
登録日2015-05-12
公開日2015-09-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of product-bound SMG1 lipase: active site gating implications.
Febs J., 282, 2015

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon