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PDB: 125 results

5CO4
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BU of 5co4 by Molmil
Structural insights into the 2-OH methylation of C/U34 on tRNA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, GLYCEROL, Putative tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Xie, W, Pang, P, Wang, Z.
Deposit date:2015-07-19
Release date:2016-07-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into the 2-OH methylation of C34 or U34 on tRNA
To Be Published
5EGN
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BU of 5egn by Molmil
Est816 as an N-Acyl homoserine lactone degrading enzyme
Descriptor: Esterase
Authors:Xie, W, Liu, X, Cao, L, Liu, Y.
Deposit date:2015-10-27
Release date:2016-11-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.636 Å)
Cite:Est816 as an N-Acyl homoserine lactone degrading enzyme
To Be Published
5E6M
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BU of 5e6m by Molmil
Crystal structure of human wild type GlyRS bound with tRNAGly
Descriptor: GLYCYL-ADENOSINE-5'-PHOSPHATE, Glycine--tRNA ligase, NICKEL (II) ION, ...
Authors:Xie, W, Qin, X, Deng, X, Chen, L, Liu, Y.
Deposit date:2015-10-10
Release date:2016-07-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.927 Å)
Cite:Crystal Structure of the Wild-Type Human GlyRS Bound with tRNA(Gly) in a Productive Conformation
J.Mol.Biol., 428, 2016
5WT3
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BU of 5wt3 by Molmil
Pyrococcus abyssi methyltransferase PaTrm5a bound by MTA and cognate tRNA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, RNA (73-MER), tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-12-09
Release date:2017-12-13
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.204 Å)
Cite:Structural insight into the methyltransfer mechanism of the bifunctional Trm5.
Sci Adv, 3, 2017
7JW3
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BU of 7jw3 by Molmil
Crystal structure of Aedes aegypti Nibbler NTD domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7JW2
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BU of 7jw2 by Molmil
Crystal structure of Aedes aegypti Nibbler EXO domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7JW6
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BU of 7jw6 by Molmil
Crystal structure of Drosophila Nibbler EXO domain
Descriptor: Exonuclease mut-7 homolog
Authors:Xie, W, Sowemimo, I, Hayashi, R, Wang, J, Brennecke, J, Ameres, S.L, Patel, D.J.
Deposit date:2020-08-24
Release date:2021-01-20
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure-function analysis of microRNA 3'-end trimming by Nibbler.
Proc.Natl.Acad.Sci.USA, 117, 2020
7L9P
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BU of 7l9p by Molmil
Structure of human SHLD2-SHLD3-REV7-TRIP13(E253Q) complex
Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Pachytene checkpoint protein 2 homolog, ...
Authors:Xie, W, Patel, D.J.
Deposit date:2021-01-04
Release date:2021-03-03
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
5H0K
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BU of 5h0k by Molmil
The crystal structure of WT Pedobacter heparinus SMUG2
Descriptor: Uncharacterized protein
Authors:Xie, W, Cao, W, Pang, P.
Deposit date:2016-10-04
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily
Biochem. J., 474, 2017
5H0J
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BU of 5h0j by Molmil
The crystal structure of WT Pedobacter heparinus SMUG2
Descriptor: Uncharacterized protein
Authors:Xie, W, Cao, W, Pang, P.
Deposit date:2016-10-04
Release date:2017-01-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:SMUG2 DNA glycosylase from Pedobacter heparinus as a new subfamily of the UDG superfamily
Biochem. J., 474, 2017
5H99
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BU of 5h99 by Molmil
Crystal structure of Geobacter metallireducens SMUG1 mutant N58D
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-26
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H9I
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BU of 5h9i by Molmil
Crystal structure of Geobacter metallireducens SMUG1 with xanthine
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, Geobacter metallireducens SMUG1, ...
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-28
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.501 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H93
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BU of 5h93 by Molmil
Crystal structure of Geobacter metallireducens SMUG1
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-25
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.176 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5H98
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BU of 5h98 by Molmil
Crystal structure of Geobacter metallireducens SMUG1
Descriptor: Geobacter metallireducens SMUG1
Authors:Xie, W, Cao, W, Zhang, Z, Shen, J.
Deposit date:2015-12-26
Release date:2016-04-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1
Acs Chem.Biol., 11, 2016
5GNZ
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BU of 5gnz by Molmil
The M3 mutant structure of Bgl6
Descriptor: Beta-glucosidase, GLYCEROL, beta-D-glucopyranose
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
5GNY
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BU of 5gny by Molmil
The structure of WT Bgl6
Descriptor: Beta-glucosidase, beta-D-glucopyranose
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
5H5E
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BU of 5h5e by Molmil
The crystal structure of the yeast arginine methyltransferase SFM1 complexed with SAH
Descriptor: Protein arginine N-methyltransferase SFM1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Xie, W, Wang, C, Zeng, J.
Deposit date:2016-11-05
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:A flexible cofactor-binding loop in the novel arginine methyltransferase Sfm1.
FEBS Lett., 591, 2017
5GNX
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BU of 5gnx by Molmil
The E171Q mutant structure of Bgl6
Descriptor: Beta-glucosidase, GLYCEROL, PROPANOIC ACID, ...
Authors:Xie, W, Pang, P, Cao, L.C, Liu, Y.H, Wang, Z.
Deposit date:2016-07-25
Release date:2017-04-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
J. Struct. Biol., 198, 2017
5H5F
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BU of 5h5f by Molmil
The crystal structure of the yeast arginine methyltransferase SFM1 complexed with SAM
Descriptor: Protein arginine N-methyltransferase SFM1, S-ADENOSYLMETHIONINE
Authors:Xie, W, Wang, C, Zeng, J.
Deposit date:2016-11-05
Release date:2017-01-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A flexible cofactor-binding loop in the novel arginine methyltransferase Sfm1.
FEBS Lett., 591, 2017
5HJJ
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BU of 5hjj by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a
Descriptor: tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HJK
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BU of 5hjk by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with SAH
Descriptor: S-ADENOSYL-L-HOMOCYSTEINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HJM
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BU of 5hjm by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with MTA
Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, ACETATE ION, HOMOSERINE LACTONE, ...
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.762 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HP7
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BU of 5hp7 by Molmil
Crystal structures of RidA in the apo form
Descriptor: Reactive Intermediate Deaminase A, chloroplastic
Authors:Xie, W, Liu, X.
Deposit date:2016-01-20
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of RidA, an important enzyme for the prevention of toxic side products
Sci Rep, 6, 2016
5HJI
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BU of 5hji by Molmil
Crystal Structure of Pyrococcus abyssi Trm5a complexed with adenosine
Descriptor: ADENOSINE, tRNA (guanine(37)-N1)-methyltransferase Trm5a
Authors:Xie, W, Wang, C, Jia, Q.
Deposit date:2016-01-13
Release date:2016-10-12
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structures of the bifunctional tRNA methyltransferase Trm5a
Sci Rep, 6, 2016
5HP8
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BU of 5hp8 by Molmil
Crystal structures of RidA in complex with pyruvate
Descriptor: PYRUVIC ACID, Reactive Intermediate Deaminase A, chloroplastic
Authors:Xie, W, Liu, X.
Deposit date:2016-01-20
Release date:2016-10-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of RidA, an important enzyme for the prevention of toxic side products
Sci Rep, 6, 2016

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