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PDB: 282 件

7YFK
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The structure of human pregnane X receptor in complex with an SRC-1 coactivator peptide and a limonoid compound, nomilin
分子名称: Nomilin, Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1
著者Xia, Y, Yao, D, Huang, C, Cao, Y.
登録日2022-07-08
公開日2023-06-14
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Pregnane X receptor agonist nomilin extends lifespan and healthspan in preclinical models through detoxification functions.
Nat Commun, 14, 2023
7JUA
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Crystal structure of the second heterocyclization domain of yersiniabactin synthetase at 2.35 A resolution
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, Irp2 protein, SODIUM ION
著者Xia, Y, Soule, J, Dowling, D.P.
登録日2020-08-19
公開日2021-09-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献High-resolution structures of a siderophore-producing cyclization domain from Yersinia pestis offer a refined proposal of substrate binding.
J.Biol.Chem., 2022
7JTJ
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Crystal structure of the second heterocyclization domain of yersiniabactin synthetase
分子名称: 2-(2-METHOXYETHOXY)ETHANOL, Irp2 protein, SODIUM ION
著者Xia, Y, Gnann, A.D, Dowling, D.P.
登録日2020-08-17
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献High-resolution structures of a siderophore-producing cyclization domain from Yersinia pestis offer a refined proposal of substrate binding.
J.Biol.Chem., 298, 2022
1LKN
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Solution NMR Structure of Protein TM_1112 from Thermotoga maritima. Ontario Centre for Structural Proteomics Target TM1112_1_89; Northeast Structural Genomics Consortium Target VT74.
分子名称: hypothetical protein tm1112
著者Xia, Y, Yee, A, Semesi, A, Arrowsmith, C.H, Northeast Structural Genomics Consortium (NESG)
登録日2002-04-25
公開日2003-06-24
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of Hypothetical Protein tm1112
to be published
8GV3
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The cryo-EM structure of GSNOR with NYY001
分子名称: (4P)-4-{2-[4-(1H-imidazol-1-yl)phenyl]-5-[3-oxo-3-(2-oxo-1,3-thiazolidin-3-yl)propyl]-1H-pyrrol-1-yl}-3-methylbenzamide, Alcohol dehydrogenase class-3, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Xia, Y, Zhang, Q, Yao, D, Zhao, S, Xie, L, Ji, Y, Cao, Y.
登録日2022-09-14
公開日2023-09-20
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献The cryo-EM structure of GSNOR with NYY001
To Be Published
7F3N
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Structure of PopP2 in apo form
分子名称: Type III effector protein popp2
著者Xia, Y, Zhang, Z.M.
登録日2021-06-16
公開日2021-11-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.351856 Å)
主引用文献Secondary-structure switch regulates the substrate binding of a YopJ family acetyltransferase.
Nat Commun, 12, 2021
7F32
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Ny-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases
分子名称: SYCNCLCRRGVCRCICTI
著者Xia, Y, Liu, C.F.
登録日2021-06-15
公開日2022-09-07
実験手法SOLUTION NMR
主引用文献N gamma-Hydroxyasparagine: A Multifunctional Unnatural Amino Acid That is a Good P1 Substrate of Asparaginyl Peptide Ligases.
Angew.Chem.Int.Ed.Engl., 60, 2021
3CSR
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
分子名称: Morphogenesis protein 1
著者Xiang, Y, Rossmann, M.G.
登録日2008-04-10
公開日2008-07-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CT1
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
著者Xiang, Y, Rossmann, M.G.
登録日2008-04-11
公開日2008-07-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CSQ
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
分子名称: Morphogenesis protein 1, ZINC ION
著者Xiang, Y, Rossmann, M.G.
登録日2008-04-10
公開日2008-07-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CT0
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Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Morphogenesis protein 1
著者Xiang, Y, Rossmann, M.G.
登録日2008-04-11
公開日2008-07-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.
Proc.Natl.Acad.Sci.Usa, 105, 2008
8J1V
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BU of 8j1v by Molmil
Cryo-EM structure of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8-9D heavy chain, 8-9D light chain, ...
著者Xiang, Y, Li, R.
登録日2023-04-13
公開日2023-11-29
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.01 Å)
主引用文献A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection.
Nat Commun, 14, 2023
8J1T
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Local refined cryo-EM structure of Omicron BA.5 RBD in complex with 8-9D Fab
分子名称: 8-9D heavy chain, 8-9D light chain, Spike protein
著者Xiang, Y, Li, R.
登録日2023-04-13
公開日2023-11-29
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献A lung-selective delivery of mRNA encoding broadly neutralizing antibody against SARS-CoV-2 infection.
Nat Commun, 14, 2023
7JVB
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BU of 7jvb by Molmil
Crystal structure of the SARS-CoV-2 spike receptor-binding domain (RBD) with nanobody Nb20
分子名称: CACODYLATE ION, Nanobody Nb20, Spike protein S1
著者Xiang, Y, Xiao, Z, Liu, H, Sang, Z, Schneidman-Duhovny, D, Zhang, C, Shi, Y.
登録日2020-08-20
公開日2020-12-02
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.287 Å)
主引用文献Versatile and multivalent nanobodies efficiently neutralize SARS-CoV-2.
Science, 370, 2020
1P9G
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BU of 1p9g by Molmil
Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Ecommia ulmoides Oliver at atomic resolution
分子名称: ACETATE ION, EAFP 2
著者Xiang, Y, Huang, R.H, Liu, X.Z, Wang, D.C.
登録日2003-05-12
公開日2004-06-01
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (0.84 Å)
主引用文献Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Eucommia ulmoides Oliver at an atomic resolution.
J.Struct.Biol., 148, 2004
8IXJ
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BU of 8ixj by Molmil
Middle segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-08-16
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXK
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bottom segment of the bacteriophage M13 mini variant
分子名称: Attachment protein G3P, Capsid protein G8P, Head virion protein G6P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-09-13
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
8IXL
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top segment of the bacteriophage M13 mini variant
分子名称: Capsid protein G8P, Tail virion protein G7P, Tail virion protein G9P
著者Xiang, Y, Jia, Q.
登録日2023-04-01
公開日2023-09-13
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM structure of a bacteriophage M13 mini variant.
Nat Commun, 14, 2023
7Y42
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BU of 7y42 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, RETINOIC ACID, Spike glycoprotein
著者Xiang, Y, Wang, L.
登録日2022-06-13
公開日2022-07-06
最終更新日2022-09-14
実験手法ELECTRON MICROSCOPY (3.45 Å)
主引用文献A Retinol Derivative Inhibits SARS-CoV-2 Infection by Interrupting Spike-Mediated Cellular Entry.
Mbio, 13, 2022
8D6J
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Human Ago2 bound to miR122(21nt) with PIWI loop swapped to AtAgo10 sequence
分子名称: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(P*UP*GP*GP*AP*GP*UP*GP*UP*GP*AP*CP*AP*AP*UP*GP*GP*UP*GP*UP*UP*U)-3')
著者Xiao, Y, MacRae, I.
登録日2022-06-06
公開日2023-05-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
8D71
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Human Ago2 bound to miR122(21nt)
分子名称: MAGNESIUM ION, Protein argonaute-2, miR-122-21nt
著者Xiao, Y, MacRae, I.
登録日2022-06-07
公開日2023-05-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A tiny loop in the Argonaute PIWI domain tunes small RNA seed strength.
Embo Rep., 24, 2023
8D0Y
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Crystal Structure of HIV-1 BG505 SOSIPv8 Trimer in Complex with CD4bs targeting antibody 21N13 and interface targeting antibody 35O22 at 4.7 Angstrom
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22scFv Heavy Chain Variable, ...
著者Xian, Y, Wilson, I.A.
登録日2022-05-26
公開日2023-07-19
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (4.7 Å)
主引用文献The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
To Be Published
1T7B
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Crystal structure of mutant Lys8Gln of scorpion alpha-like neurotoxin BmK M1 from Buthus martensii Karsch
分子名称: Alpha-like neurotoxin BmK-I
著者Xiang, Y, Guan, R.J, He, X.L, Wang, C.G, Wang, M, Zhang, Y, Sundberg, E.J, Wang, D.C.
登録日2004-05-09
公開日2004-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural Mechanism Governing Cis and Trans Isomeric States and an Intramolecular Switch for Cis/Trans Isomerization of a Non-proline Peptide Bond Observed in Crystal Structures of Scorpion Toxins
J.Mol.Biol., 341, 2004
8D50
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Crystal Structure of Mosaic HIV-1 Envelope (MosM3.1) in Complex with antibodies PGT124 and 35O22 at 4.3 Angstrom
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 35O22 Fab heavy chain, ...
著者Xian, Y, Wilson, I.A.
登録日2022-06-03
公開日2023-12-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (4.32 Å)
主引用文献Structural and Antigenic Characterization of B Cell Mosaic Env Trimers
To Be Published
8D01
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The domain-swaped dimer of the HIV-1 CD4bs targeting antibody 21N13
分子名称: 21N13 Fab heavy chain, 21N13 Fab light chain
著者Xian, Y, Wilson, I.A.
登録日2022-05-25
公開日2023-12-13
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Structural and Antigenic Characterization of B Cell Mosaic Env Trimers
To Be Published

222036

件を2024-07-03に公開中

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