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PDB: 27 results

1ECU
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BU of 1ecu by Molmil
SOLUTION STRUCTURE OF E2F BINDING DNA FRAGMENT GCGCGAAAC-T-GTTTCGCGC
Descriptor: DNA (5'-D(*GP*CP*GP*CP*GP*AP*AP*AP*CP*TP*GP*TP*TP*TP*CP*GP*CP*GP*C)-3')
Authors:Wu, J.H, Chang, C, Pei, J.M, Xiao, Q, Shi, Y.Y.
Deposit date:2000-01-26
Release date:2000-02-02
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of E2F binding DNA fragment GCGCGAAAC-T-GTTTCGCGC studied by Molecular Dynamics Simulation and Two Dimensional NMR experiment
to be published, 2000
2JWE
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BU of 2jwe by Molmil
Solution structure of the second PDZ domain from human zonula occludens-1: A dimeric form with 3D domain swapping
Descriptor: Tight junction protein ZO-1
Authors:Ji, P, Wu, J.W, Zhang, J.H, Yang, Y.S, Wu, J.H, Shi, Y.Y.
Deposit date:2007-10-10
Release date:2007-10-30
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the second PDZ domain of Zonula Occludens 1
Proteins, 79, 2011
2I8N
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BU of 2i8n by Molmil
Solution structure of the second bromodomain of Brd4
Descriptor: Bromodomain-containing protein 4
Authors:Liu, Y, Wu, J.H, Shi, Y.Y.
Deposit date:2006-09-02
Release date:2007-09-04
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second bromodomain of Brd4
To be Published
4QVC
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BU of 4qvc by Molmil
E.coli Hfq in complex with RNA Aus
Descriptor: RNA (5'-R(*AP*U*AP*AP*CP*UP*A)-3'), RNA-binding protein Hfq
Authors:Wang, L.J, Wang, W.W, Li, F.D, Wu, J.H, Gong, Q.G, Shi, Y.Y.
Deposit date:2014-07-14
Release date:2015-05-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq
Nucleic Acids Res., 43, 2015
2FH0
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BU of 2fh0 by Molmil
NMR Ensemble of The Yeast Saccharomyces cerevisiae protein Ymr074cp core region
Descriptor: Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region
Authors:Hong, J.J, Zhang, J.H, Wu, J.H, Shi, Y.Y.
Deposit date:2005-12-23
Release date:2007-01-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of Saccharomyces cerevisiae Protein Ymr074cp
To be Published
6LDZ
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BU of 6ldz by Molmil
Crystal structure of Rv0222 from Mycobacterium tuberculosis
Descriptor: Probable enoyl-CoA hydratase EchA1 (Enoyl hydrase) (Unsaturated acyl-CoA hydratase) (Crotonase)
Authors:Li, J, Ran, Y.J, Wang, L, Wu, J.H, Ge, B.X, Rao, Z.H.
Deposit date:2019-11-23
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Host-mediated ubiquitination of a mycobacterial protein suppresses immunity.
Nature, 577, 2020
4QVD
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BU of 4qvd by Molmil
E.coli Hfq in complex with RNA Ads
Descriptor: RNA (5'-R(*AP*AP*CP*UP*AP*AP*A)-3'), RNA-binding protein Hfq
Authors:Wang, L.J, Wang, W.W, Li, F.D, Wu, J.H, Gong, Q.G, Shi, Y.Y.
Deposit date:2014-07-14
Release date:2015-05-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.972 Å)
Cite:Structural insights into the recognition of the internal A-rich linker from OxyS sRNA by Escherichia coli Hfq
Nucleic Acids Res., 43, 2015
8J6Z
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BU of 8j6z by Molmil
Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2)
Descriptor: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ...
Authors:Chen, S.J.B, Wu, J.H, Sui, S.F, Zhang, L.X.
Deposit date:2023-04-26
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.79 Å)
Cite:Regulatory dynamics of the higher-plant PSI-LHCI supercomplex during state transitions.
Mol Plant, 16, 2023
8J7B
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BU of 8j7b by Molmil
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2)
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Chen, S.J.B, Wu, J.H, Sui, S.F, Zhang, L.X.
Deposit date:2023-04-27
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:Regulatory dynamics of the higher-plant PSI-LHCI supercomplex during state transitions.
Mol Plant, 16, 2023
8J7A
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BU of 8j7a by Molmil
Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 1 (PSI-ST1)
Descriptor: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Chen, S.J.B, Wu, J.H, Sui, S.F, Zhang, L.X.
Deposit date:2023-04-27
Release date:2023-11-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Regulatory dynamics of the higher-plant PSI-LHCI supercomplex during state transitions.
Mol Plant, 16, 2023
2OSG
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BU of 2osg by Molmil
Solution Structure and Binding Property of the Domain-swapped Dimer of ZO2PDZ2
Descriptor: Tight junction protein ZO-2
Authors:Wu, J.W, Yang, Y.S, Zhang, J.H, Ji, P, Wu, J.H, Shi, Y.Y.
Deposit date:2007-02-05
Release date:2007-09-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Domain-swapped Dimerization of the Second PDZ Domain of ZO2 May Provide a Structural Basis for the Polymerization of Claudins
J.Biol.Chem., 282, 2007
8TEC
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BU of 8tec by Molmil
Crystal structure of Kindlin2 in complex with acylated beta1 integrin peptide
Descriptor: Fermitin family homolog 2, Integrin beta-1
Authors:Zhang, P.F, Wu, J.H.
Deposit date:2023-07-06
Release date:2024-07-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Acetyl-NPKY of integrin-beta 1 binds KINDLIN2 to control endothelial cell proliferation and junctional integrity.
Iscience, 27, 2024
8TEE
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BU of 8tee by Molmil
Crystal structure of Kindlin2 in complex with K794Q mutated beta1 integrin
Descriptor: Fermitin family homolog 2, Integrin beta-1
Authors:Zhang, P.F, Wu, J.H.
Deposit date:2023-07-06
Release date:2024-07-03
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Acetyl-NPKY of integrin-beta 1 binds KINDLIN2 to control endothelial cell proliferation and junctional integrity.
Iscience, 27, 2024
4NS5
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BU of 4ns5 by Molmil
Crystal structure of human BS69 Bromo-Zinc finger-PWWP
Descriptor: ZINC ION, Zinc finger MYND domain-containing protein 11
Authors:Wang, J.C, Qin, S, Li, F.D, Li, S, Zhang, W, Wu, J.H, Shi, Y.Y.
Deposit date:2013-11-28
Release date:2014-04-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of human BS69 Bromo-ZnF-PWWP reveals its role in H3K36me3 nucleosome binding.
Cell Res., 24, 2014
4RDO
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BU of 4rdo by Molmil
Structure of YTH-YTHDF2 in the free state
Descriptor: SULFATE ION, YTH domain-containing family protein 2
Authors:Li, F.D, Zhao, D.B, Wu, J.H, Shi, Y.Y.
Deposit date:2014-09-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition.
Cell Res., 24, 2014
4RDN
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BU of 4rdn by Molmil
Structure of YTH-YTHDF2 in complex with m6A
Descriptor: N-methyladenosine, SULFATE ION, YTH domain-containing family protein 2
Authors:Li, F.D, Zhao, D.B, Wu, J.H, Shi, Y.Y.
Deposit date:2014-09-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition.
Cell Res., 24, 2014
5DNO
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BU of 5dno by Molmil
Crystal structure of Mmi1 YTH domain complex with RNA
Descriptor: RNA (5'-R(*CP*UP*UP*AP*AP*AP*C)-3'), YTH domain-containing protein mmi1
Authors:Wang, C.Y, Zhu, Y.W, Wu, J.H, Shi, Y.Y.
Deposit date:2015-09-10
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1
Nucleic Acids Res., 44, 2016
5DNP
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BU of 5dnp by Molmil
Crystal structure of Mmi1 YTH domain
Descriptor: PHOSPHATE ION, YTH domain-containing protein mmi1
Authors:Wang, C.Y, Zhu, Y.W, Shi, Y.Y, Wu, J.H.
Deposit date:2015-09-10
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A novel RNA-binding mode of the YTH domain reveals the mechanism for recognition of determinant of selective removal by Mmi1
Nucleic Acids Res., 44, 2016
1T2M
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BU of 1t2m by Molmil
Solution Structure Of The Pdz Domain Of AF-6
Descriptor: AF-6 protein
Authors:Zhou, H, Wu, J.H, Xu, Y.Q, Huang, A.D, Shi, Y.Y.
Deposit date:2004-04-22
Release date:2005-02-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of AF-6 PDZ Domain and Its Interaction with the C-terminal Peptides from Neurexin and Bcr
J.Biol.Chem., 280, 2005
3RES
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BU of 3res by Molmil
Crystal structure of E coli Hfq in complex with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Protein hfq
Authors:Wang, W.W, Wu, J.H, Shi, Y.Y.
Deposit date:2011-04-05
Release date:2011-10-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Cooperation of Escherichia coli Hfq hexamers in DsrA binding.
Genes Dev., 25, 2011
3RER
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BU of 3rer by Molmil
Crystal structure of E. coli Hfq in complex with AU6A RNA and ADP
Descriptor: 5'-R(*AP*UP*UP*UP*UP*UP*UP*A)-3', ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Wang, W.W, Wu, J.H, Shi, Y.Y.
Deposit date:2011-04-05
Release date:2011-10-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Cooperation of Escherichia coli Hfq hexamers in DsrA binding.
Genes Dev., 25, 2011
7V9M
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BU of 7v9m by Molmil
Cryo-EM structure of the GHRH-bound human GHRHR splice variant 1 complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, ...
Authors:Cong, Z.T, Zhou, F.L, Zhang, C, Zou, X.Y, Zhang, H.B, Wang, Y.Z, Zhou, Q.T, Cai, X.Q, Liu, Q.F, Li, J, Shao, L.J, Mao, C.Y, Wang, X, Wu, J.H, Xia, T, Zhao, L.H, Jiang, H.L, Zhang, Y, Xu, H.E, Chen, X, Yang, D.H, Wang, M.W.
Deposit date:2021-08-26
Release date:2021-10-20
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:Constitutive signal bias mediated by the human GHRHR splice variant 1.
Proc.Natl.Acad.Sci.USA, 118, 2021
7V9L
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BU of 7v9l by Molmil
Cryo-EM structure of the SV1-Gs complex.
Descriptor: GHRH receptor splice variant 1,GHRH receptor splice variant 1,GHRH receptor splice variant 1,SV1, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Cong, Z.T, Zhou, F.L, Zhang, C, Zou, X.Y, Zhang, H.B, Wang, Y.Z, Zhou, Q.T, Cai, X.Q, Liu, Q.F, Li, J, Shao, L.J, Mao, C.Y, Wang, X, Wu, J.H, Xia, T, Zhao, L.H, Jiang, H.L, Zhang, Y, Xu, H.E, Cheng, X, Yang, D.H, Wang, M.W.
Deposit date:2021-08-26
Release date:2022-04-06
Last modified:2022-05-04
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Constitutive signal bias mediated by the human GHRHR splice variant 1.
Proc.Natl.Acad.Sci.USA, 118, 2021
1DAQ
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BU of 1daq by Molmil
SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE)
Descriptor: CALCIUM ION, ENDOGLUCANASE SS
Authors:Lytle, B.L, Volkman, B.F, Westler, W.M, Heckman, M.P, Wu, J.H.D.
Deposit date:1999-10-31
Release date:2001-04-04
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain.
J.Mol.Biol., 307, 2001
1L1Y
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BU of 1l1y by Molmil
The Crystal Structure and Catalytic Mechanism of Cellobiohydrolase CelS, the Major Enzymatic Component of the Clostridium thermocellum cellulosome
Descriptor: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, cellobiohydrolase
Authors:Guimaraes, B.G, Souchon, H, Lytle, B.L, Wu, J.H.D, Alzari, P.M.
Deposit date:2002-02-20
Release date:2002-07-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The crystal structure and catalytic mechanism of cellobiohydrolase CelS, the major enzymatic component of the Clostridium thermocellum Cellulosome.
J.Mol.Biol., 320, 2002

 

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