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PDB: 28 results

1S2R
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A High Resolution Crystal Structure of [d(CGCAAATTTGCG)]2
Descriptor: 5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3', SPERMINE
Authors:Woods, K.K, Maehigashi, T, Howerton, S.B, Tannenbaum, S, Williams, L.D.
Deposit date:2004-01-09
Release date:2005-01-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:High-resolution structure of an extended A-tract: [d(CGCAAATTTGCG)]2.
J.Am.Chem.Soc., 126, 2004
1NGT
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BU of 1ngt by Molmil
The Role of Minor Groove Functional Groups in DNA Hydration
Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*(MTR)P*TP*CP*GP*CP*G)-3', MAGNESIUM ION
Authors:Woods, K.K, Lan, T, McLaughlin, L.W, Williams, L.D.
Deposit date:2002-12-17
Release date:2003-03-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The Role of Minor Groove Functional Groups in DNA Hydration
Nucleic Acids Res., 31, 2003
1DOU
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BU of 1dou by Molmil
MONOVALENT CATIONS SEQUESTER WITHIN THE A-TRACT MINOR GROOVE OF [D(CGCGAATTCGCG)]2
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Woods, K.K, McFail-Isom, L, Sines, C.C, Howerton, S.B, Stephens, R.K, Williams, L.D.
Deposit date:1999-12-21
Release date:1999-12-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Monovalent Cations Sequester within the A-Tract Minor Groove of [d(CGCGAATTCGCG)]2
J.Am.Chem.Soc., 122, 2000
1DRG
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CRYSTAL STRUCTURE OF TRIMERIC CRE RECOMBINASE-LOX COMPLEX
Descriptor: 5'-D(*AP*TP*AP*TP*GP*CP*TP*AP*TP*AP*CP*GP*AP*AP*GP*TP*TP*AP*T)-3', 5'-D(*TP*AP*TP*AP*AP*CP*TP*TP*CP*GP*TP*AP*TP*AP*GP*C)-3', CRE RECOMBINASE
Authors:Woods, K.C, Baldwin, E.P.
Deposit date:2000-01-06
Release date:2001-10-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Quasi-equivalence in site-specific recombinase structure and function: crystal structure and activity of trimeric Cre recombinase bound to a three-way Lox DNA junction
J.Mol.Biol., 313, 2001
3U89
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Crystal structure of one turn of g/c rich b-dna revisited
Descriptor: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G) -3', MAGNESIUM ION
Authors:Maehigashi, T, Woods, K.K, Moulaei, T, Komeda, S, Williams, L.D.
Deposit date:2011-10-16
Release date:2011-11-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.
Nucleic Acids Res., 40, 2012
7SNS
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BU of 7sns by Molmil
1.55A Resolution Structure of NanoLuc Luciferase
Descriptor: ACETATE ION, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:1.55A Resolution Structure of NanoLuc Luciferase
To be published
7SNW
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1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
Descriptor: 2-(methoxycarbonyl)thiophene-3-sulfonic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.80A Resolution Structure of NanoLuc Luciferase with Bound Inhibitor PC 16026576
To be published
7SNX
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BU of 7snx by Molmil
1.70A Resolution Structure of NanoBiT Complementation Reporter Complex of LgBit and SmBiT Subunits
Descriptor: GLYCEROL, Oplophorus-luciferin 2-monooxygenase catalytic subunit, Oplophorus-luciferin 2-monooxygenase catalytic subunit: C-terminal Peptide (11-mer)
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1.70A Resolution Structure of NanoBiT Complementation Reporter Complex of LgBit and SmBiT Subunits
To be published
7SNY
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2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
Descriptor: Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.10A Resolution Structure of NanoBiT Complementation Reporter Large Subunit LgBiT
To be published
7SNR
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2.00A Resolution Structure of NanoLuc Luciferase
Descriptor: ACETATE ION, CITRATE ANION, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:2.00A Resolution Structure of NanoLuc Luciferase
To be published
7SNT
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BU of 7snt by Molmil
2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
Descriptor: (4S)-8-benzyl-2-[(furan-2-yl)methyl]-3-methoxy-6-phenylimidazo[1,2-a]pyrazine, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Unch, J, Encell, L.P, Wood, K.V.
Deposit date:2021-10-28
Release date:2022-11-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2.20A Resolution Structure of NanoLuc Luciferase with Bound Substrate Analog 3-methoxy-furimazine
To be published
5IBO
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BU of 5ibo by Molmil
1.95A resolution structure of NanoLuc luciferase
Descriptor: DECANOIC ACID, Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Wood, M.G, Encell, L.P, Wood, K.V.
Deposit date:2016-02-22
Release date:2016-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:To be determined
To be published
6MS8
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Crystal Structure of Chalcone Isomerase from Medicago Truncatula Complexed with (2S) Naringenin
Descriptor: Chalcone-flavonone isomerase family protein, NARINGENIN
Authors:Burke, J.R, La Clair, J.J, Philippe, R.N, Pabis, A, Jez, J.M, Cortina, G, Kaltenbach, M, Bowman, M.E, Woods, K.B, Nelson, A.T, Tawfik, D.S, Kamerlin, S.C.L, Noel, J.P.
Deposit date:2018-10-16
Release date:2019-08-21
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases
Acs Catalysis, 2019
2R1J
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BU of 2r1j by Molmil
Crystal Structure of the P22 c2 Repressor protein in complex with the synthetic operator 9T
Descriptor: 5'-D(*DCP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DA)-3', 5'-D(*DTP*DAP*DTP*DTP*DTP*DAP*DAP*DGP*DAP*DTP*DAP*DTP*DCP*DTP*DTP*DAP*DAP*DAP*DTP*DG)-3', Repressor protein C2
Authors:Williams, L.D, Koudelka, G.B, Watkins, D, Hsiao, C, Woods, K.
Deposit date:2007-08-22
Release date:2008-04-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:P22 c2 repressor-operator complex: mechanisms of direct and indirect readout
Biochemistry, 47, 2008
6MC6
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BU of 6mc6 by Molmil
Crystal structure of PprA filament from Deinococcus radiodurans
Descriptor: DNA repair protein PprA
Authors:Szabla, R, Junop, M.S, Wood, K.
Deposit date:2018-08-30
Release date:2018-09-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.747 Å)
Cite:Crystal structure of PprA from Deinococcus radiodurans
To Be Published
2UZT
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PKA structures of AKT, indazole-pyridine inhibitors
Descriptor: (2S)-1-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}-3-PHENYLPROPAN-2-AMINE, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA, CAMP-DEPENDENT PROTEIN KINASE, ...
Authors:Zhu, G.D, Gandhi, V.B, Gong, J, Thomas, S, Woods, K.W, Song, X, Li, T, Diebold, R.B, Luo, Y, Liu, X, Guan, R, Klinghofer, V, Johnson, E.F, Bouska, J, Olson, A, Marsh, K.C, Stoll, V.S, Mamo, M, Polakowski, J, Campbell, T.J, Penning, T.D, Li, Q, Rosenberg, S.H, Giranda, V.L.
Deposit date:2007-05-01
Release date:2007-06-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Syntheses of Potent, Selective, and Orally Bioavailable Indazole-Pyridine Series of Protein Kinase B/Akt Inhibitors with Reduced Hypotension.
J.Med.Chem., 50, 2007
2UZU
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BU of 2uzu by Molmil
PKA structures of indazole-pyridine series of AKT inhibitors
Descriptor: (2S)-1-(1H-INDOL-3-YL)-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA, CAMP-DEPENDENT PROTEIN KINASE, ...
Authors:Zhu, G.D, Gandhi, V.B, Gong, J, Thomas, S, Woods, K.W, Song, X, Li, T, Diebold, R.B, Luo, Y, Liu, X, Guan, R, Klinghofer, V, Johnson, E.F, Bouska, J, Olson, A, Marsh, K.C, Stoll, V.S, Mamo, M, Polakowski, J, Campbell, T.J, Penning, T.D, Li, Q, Rosenberg, S.H, Giranda, V.L.
Deposit date:2007-05-01
Release date:2007-06-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Syntheses of Potent, Selective, and Orally Bioavailable Indazole-Pyridine Series of Protein Kinase B/Akt Inhibitors with Reduced Hypotension.
J.Med.Chem., 50, 2007
2UZV
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BU of 2uzv by Molmil
PKA structures of indazole-pyridine series of AKT inhibitors
Descriptor: (2S)-1-[3-(CYCLOHEXYLMETHOXY)PHENYL]-3-{[5-(3-METHYL-1H-INDAZOL-5-YL)PYRIDIN-3-YL]OXY}PROPAN-2-AMINE, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA,, CAMP-DEPENDENT PROTEIN KINASE, ...
Authors:Zhu, G.D, Gandhi, V.B, Gong, J, Thomas, S, Woods, K.W, Song, X, Li, T, Diebold, R.B, Luo, Y, Liu, X, Guan, R, Klinghofer, V, Johnson, E.F, Bouska, J, Olson, A, Marsh, K.C, Stoll, V.S, Mamo, M, Polakowski, J, Campbell, T.J, Penning, T.D, Li, Q, Rosenberg, S.H, Giranda, V.L.
Deposit date:2007-05-01
Release date:2007-06-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Syntheses of Potent, Selective, and Orally Bioavailable Indazole-Pyridine Series of Protein Kinase B/Akt Inhibitors with Reduced Hypotension.
J.Med.Chem., 50, 2007
2UZW
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PKA structures of indazole-pyridine series of AKT inhibitors
Descriptor: 3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.] PYRAZOLE, CAMP-DEPENDENT PROTEIN KINASE INHIBITOR ALPHA, CAMP-DEPENDENT PROTEIN KINASE, ...
Authors:Zhu, G.D, Gandhi, V.B, Gong, J, Thomas, S, Woods, K.W, Song, X, Li, T, Diebold, R.B, Luo, Y, Liu, X, Guan, R, Klinghofer, V, Johnson, E.F, Bouska, J, Olson, A, Marsh, K.C, Stoll, V.S, Mamo, M, Polakowski, J, Campbell, T.J, Penning, T.D, Li, Q, Rosenberg, S.H, Giranda, V.L.
Deposit date:2007-05-01
Release date:2007-06-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Syntheses of Potent, Selective, and Orally Bioavailable Indazole-Pyridine Series of Protein Kinase B/Akt Inhibitors with Reduced Hypotension.
J.Med.Chem., 50, 2007
2DYW
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A Backbone binding DNA complex
Descriptor: (6-AMINOHEXYLAMINE)(TRIAMMINE) PLATINUM(II) COMPLEX, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', SODIUM ION, ...
Authors:Komeda, S, Moulaei, T, Woods, K.K, Chikuma, M, Farrell, N.P, Williams, L.D.
Deposit date:2006-09-18
Release date:2007-01-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:A Third Mode of DNA Binding: Phosphate Clamps by a Polynuclear Platinum Complex
J.Am.Chem.Soc., 128, 2006
4RHT
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BU of 4rht by Molmil
Crystal structures of Mycobacterium tuberculosis 6-oxopurine phosphoribosyltransferase which is a potential target for drug development against this disease
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Hypoxanthine-guanine phosphoribosyltransferase Hpt, MAGNESIUM ION, ...
Authors:Eng, W.S, Hockova, D, Spacek, P, West, N.P, Woods, K, Naesens, L.M.J, Keough, D.T, Guddat, L.W.
Deposit date:2014-10-03
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7633 Å)
Cite:First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity.
J.Med.Chem., 58, 2015
4RHY
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Crystal structures of Mycobacterium tuberculosis 6-oxopurine phosphoribosyltransferase which is a potential target for drug development against this disease
Descriptor: Hypoxanthine-guanine phosphoribosyltransferase, MAGNESIUM ION, [2-({2-[bis(2-phosphonoethyl)amino]ethyl}[2-(6-oxo-3,6-dihydro-9H-purin-9-yl)ethyl]amino)ethyl]phosphonic acid
Authors:Eng, W.S, Hockova, D, Spacek, P, West, N.P, Woods, K, Naesens, L.M.J, Keough, D.T, Guddat, L.W.
Deposit date:2014-10-03
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3196 Å)
Cite:First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity.
J.Med.Chem., 58, 2015
4RHX
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Structures of Mycobacterium tuberculosis 6-oxopurine phosphoribosyltransferase which is a potential target for drug development against this disease
Descriptor: Hypoxanthine-guanine phosphoribosyltransferase, MAGNESIUM ION, [2-([2-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl]{2-[(2-oxoethyl)(2-phosphonoethyl)amino]ethyl}amino)ethyl]phosphonic acid
Authors:Eng, W.S, Hockova, D, Spacek, P, West, N.P, Woods, K, Naesens, L.M.J, Keough, D.T, Guddat, L.W.
Deposit date:2014-10-03
Release date:2015-05-20
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.0322 Å)
Cite:First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity.
J.Med.Chem., 58, 2015
4RHU
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Crystal structures of Mycobacterium tuberculosis 6-oxopurine phosphoribosyltransferase which is a potential target for drug development against this disease
Descriptor: Hypoxanthine-guanine phosphoribosyltransferase Hpt, MAGNESIUM ION, {[(2R)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)propane-1,2-diyl]bis(oxyethane-2,1-diyl)}bis(phosphonic acid), ...
Authors:Eng, W.S, Hockova, D, Spacek, P, West, N.P, Woods, K, Naesens, L.M.J, Keough, D.T, Guddat, L.W.
Deposit date:2014-10-03
Release date:2015-05-20
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.573 Å)
Cite:First Crystal Structures of Mycobacterium tuberculosis 6-Oxopurine Phosphoribosyltransferase: Complexes with GMP and Pyrophosphate and with Acyclic Nucleoside Phosphonates Whose Prodrugs Have Antituberculosis Activity.
J.Med.Chem., 58, 2015
6CJN
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Crystal Structure of Chalcone Isomerase from Medicago Sativa with the G95T mutation
Descriptor: Chalcone--flavonone isomerase 1, SULFATE ION
Authors:Burke, J.R, La Clair, J.J, Philippe, R.N, Pabis, A, Jez, J.M, Cortina, G, Kaltenbach, M, Bowman, M.E, Woods, K.B, Nelson, A.T, Tawfik, D.S, Kamerlin, S.C.L, Noel, J.P.
Deposit date:2018-02-26
Release date:2019-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Bifunctional Substrate Activation via an Arginine Residue Drives Catalysis in Chalcone Isomerases
Acs Catalysis, 2019

 

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