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PDB: 38 results

6MFT
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Crystal structure of glycosylated 426c HIV-1 gp120 core G459C in complex with glVRC01 A60C heavy chain
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Weidle, C, Pancera, M, Stamatatos, L, Gray, M.
Deposit date:2018-09-12
Release date:2018-11-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.315 Å)
Cite:Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core.
Elife, 7, 2018
7RDW
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BU of 7rdw by Molmil
Crystal Structure of FH1 Fab bound to HXb2 HIV-1 gp120 core
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2021-07-12
Release date:2022-05-25
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.55 Å)
Cite:Characterization of a vaccine-elicited human antibody with sequence homology to VRC01-class antibodies that binds the C1C2 gp120 domain.
Sci Adv, 8, 2022
6VLW
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BU of 6vlw by Molmil
Crystal Structure of 426cOD in Complex with VRC01 Fab
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 426cOD, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2020-01-27
Release date:2020-12-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:HIV-1 VRC01 Germline-Targeting Immunogens Select Distinct Epitope-Specific B Cell Receptors.
Immunity, 53, 2020
7JLN
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BU of 7jln by Molmil
Crystal structure of glVRC01 Fab in complex with anti-idiotype iv9 Fab
Descriptor: AMMONIUM ION, SODIUM ION, glVRC01 Heavy Chain, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2020-07-30
Release date:2021-03-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Development of a VRC01-class germline targeting immunogen derived from anti-idiotypic antibodies.
Cell Rep, 35, 2021
6WRP
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BU of 6wrp by Molmil
Crystal Structure of PI3-E12 Fab, An Antibody Against Human Parainfluenza Virus Type III
Descriptor: 1,2-ETHANEDIOL, AMMONIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2020-04-29
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Protective antibodies against human parainfluenza virus type 3 infection.
Mabs, 13, 2021
7JLK
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BU of 7jlk by Molmil
Crystal structure of glVRC01 Fab in complex with anti-idiotype iv1 scFv
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2020-07-29
Release date:2021-03-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Development of a VRC01-class germline targeting immunogen derived from anti-idiotypic antibodies.
Cell Rep, 35, 2021
8SZZ
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BU of 8szz by Molmil
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:Weidle, C, Borst, A.
Deposit date:2023-05-30
Release date:2023-11-01
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023
8TL7
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BU of 8tl7 by Molmil
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Descriptor: Computationally designed protein
Authors:Weidle, C, Borst, A.J.
Deposit date:2023-07-26
Release date:2024-03-13
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
6OL5
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BU of 6ol5 by Molmil
Structure of iglb12 Fab in complex with anti-idiotype ib3 Fab
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, AMMONIUM ION, CHLORIDE ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-04-15
Release date:2019-07-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Detection and activation of HIV broadly neutralizing antibody precursor B cells using anti-idiotypes.
J.Exp.Med., 216, 2019
8UTM
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BU of 8utm by Molmil
CryoEM Structure of Allosterically Switchable De Novo Protein sr322, In Closed State without Effector Peptide, off Target Multimeric State
Descriptor: de novo protein sr322
Authors:Weidle, C, Borst, A.
Deposit date:2023-10-31
Release date:2024-08-14
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (4.32 Å)
Cite:De novo design of allosterically switchable protein assemblies.
Nature, 632, 2024
6OL6
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BU of 6ol6 by Molmil
Structure of iglb12 scFv in complex with anti-idiotype ib2 Fab
Descriptor: CHLORIDE ION, ib2 Heavy Chain, ib2 Light Chain, ...
Authors:Weidle, C, Pancera, M, Gewe, M.
Deposit date:2019-04-15
Release date:2019-07-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Detection and activation of HIV broadly neutralizing antibody precursor B cells using anti-idiotypes.
J.Exp.Med., 216, 2019
6P8N
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BU of 6p8n by Molmil
Crystal Structure of Antibody P-p1f1 in Complex with eOD-GT8
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.202 Å)
Cite:Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization.
Cell Rep, 29, 2019
6P8M
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BU of 6p8m by Molmil
Crystal Structure of Antibody P-p3b3 A60C Heavy Chain in Complex with 426c HIV-1 gp120 core G459C
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, AMMONIUM ION, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-06-07
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.594 Å)
Cite:Overcoming Steric Restrictions of VRC01 HIV-1 Neutralizing Antibodies through Immunization.
Cell Rep, 29, 2019
6OL7
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BU of 6ol7 by Molmil
Crystal structure of glVRC01 scFv in complex with anti-idiotype iv8 scFv
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Weidle, C, Pancera, M.
Deposit date:2019-04-15
Release date:2019-07-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.419 Å)
Cite:Anti-idiotypic antibodies elicit anti-HIV-1-specific B cell responses.
J.Exp.Med., 216, 2019
8UP1
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BU of 8up1 by Molmil
CryoEM Structure of Allosterically Switchable De Novo Protein sr322, In Closed State without Effector Peptide
Descriptor: De Novo Protein sr322
Authors:Weidle, C, Borst, A.
Deposit date:2023-10-20
Release date:2024-08-14
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (4.55 Å)
Cite:De novo design of allosterically switchable protein assemblies.
Nature, 632, 2024
8URE
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BU of 8ure by Molmil
CryoEM Structure of Allosterically Switchable De Novo Protein sr312, in Open State with Effector Peptide
Descriptor: Effector peptide cs221B, sr312
Authors:Weidle, C, Skotheim, R.
Deposit date:2023-10-25
Release date:2024-08-14
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:De novo design of allosterically switchable protein assemblies.
Nature, 632, 2024
8V2D
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BU of 8v2d by Molmil
Computational Designed Nanocage O43_129
Descriptor: O43_129 component A, O43_129 component B
Authors:Weidle, C, Kibler, R.D.
Deposit date:2023-11-22
Release date:2024-03-13
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (6.77 Å)
Cite:Blueprinting extendable nanomaterials with standardized protein blocks.
Nature, 627, 2024
6VRQ
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BU of 6vrq by Molmil
Crystal structure of gl12A21 Fab in complex with anti-idiotypic iv12 Fab
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Aljedani, S.S, Weidle, C, Pancera, M.
Deposit date:2020-02-08
Release date:2021-02-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Development of a VRC01-class germline targeting immunogen derived from anti-idiotypic antibodies.
Cell Rep, 35, 2021
6XOC
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BU of 6xoc by Molmil
Crystal structure of glVRC01 Fab in complex with anti-idiotypic iv4 Fab
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, ...
Authors:Aljedani, S.S, Weidle, C, Pancera, M.
Deposit date:2020-07-06
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Development of a VRC01-class germline targeting immunogen derived from anti-idiotypic antibodies.
Cell Rep, 35, 2021
9DZ8
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BU of 9dz8 by Molmil
Catalytic domain of Dihydrolipoamide Succinytransferase
Descriptor: Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
Authors:Carr, K.D, Borst, A.J, Weidle, C.
Deposit date:2024-10-15
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Protein identification using cryo-EM and artificial intelligence guides improved sample purification
to be published
6MZJ
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BU of 6mzj by Molmil
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 2 Fabs bound, sharpened map
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 426c DS-SOSIP D3, ...
Authors:Borst, A.J, Weidle, C.E, Gray, M.D, Frenz, B, Snijder, J, Joyce, M.G, Georgiev, I.S, Stewart-Jones, G.B.E, Kwong, P.D, McGuire, A.T, DiMaio, F, Stamatatos, L, Pancera, M, Veesler, D.
Deposit date:2018-11-05
Release date:2018-11-14
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core.
Elife, 7, 2018
6MYY
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BU of 6myy by Molmil
Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 426c DS-SOSIP D3, ...
Authors:Borst, A.J, Weidle, C.E, Gray, M.D, Frenz, B, Snijder, J, Joyce, M.G, Georgiev, I.S, Stewart-Jones, G.B.E, Kwong, P.D, McGuire, A.T, DiMaio, F, Stamatatos, L, Pancera, M, Veesler, D.
Deposit date:2018-11-02
Release date:2018-11-14
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer and a glycosylated HIV-1 gp120 core.
Elife, 7, 2018
9DZE
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BU of 9dze by Molmil
Computationally Designed Bifaceted Protein Nanomaterial pD5-14
Descriptor: pD5-14 A component, pD5-14 B component, pD5-14 C component, ...
Authors:Car, K.D, Borst, A.J, Weidle, C.
Deposit date:2024-10-16
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Computational design of bifaceted protein nanomaterials with tailorable properties
Biorxiv, 2024
7U63
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BU of 7u63 by Molmil
Crystal Structure Anti-Oxycodone Antibody HY2-A12 Fab Complexed with Oxycodone
Descriptor: 14-hydroxy-3-methoxy-17-methyl-5beta-4,5-epoxymorphinan-6-one, HY2-A12 Fab Heavy Chain, HY2-A12 Fab Light Chain
Authors:Rodarte, J.V, Pancera, M.P, Weidle, C, Rupert, P.B, Strong, R.K.
Deposit date:2022-03-03
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of drug-specific monoclonal antibodies bound to opioids and nicotine reveal a common mode of binding.
Structure, 31, 2023
6B5P
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BU of 6b5p by Molmil
Structure of PfCSP peptide 20 with human antibody CIS42
Descriptor: CIS42 Fab Heavy chain, CIS42 Fab Light chain, pfCSP peptide 20: ASN-PRO-ASP-PRO-ASN-ALA-ASN-PRO-ASN-VAL-ASP
Authors:Pancera, M, Weidle, C.
Deposit date:2017-09-29
Release date:2018-03-21
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.297 Å)
Cite:A human monoclonal antibody prevents malaria infection by targeting a new site of vulnerability on the parasite.
Nat. Med., 24, 2018

 

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數據於2024-10-30公開中

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