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PDB: 659 results

2B8V
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BU of 2b8v by Molmil
Crystal structure of human Beta-secretase complexed with L-L000430,469
Descriptor: 3-BENZOYL-N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]BENZAMIDE, Beta-secretase 1
Authors:Stachel, S.J, Coburn, C.A, Steele, T.G, Crouthamel, M.-C, Pietrak, B.L, Lai, M.-T, Holloway, M.K, Munshi, S.K, Graham, S.L, Vacca, J.P.
Deposit date:2005-10-10
Release date:2005-12-06
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conformationally biased P3 amide replacements of beta-secretase inhibitors.
Bioorg.Med.Chem.Lett., 16, 2006
3NH4
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BU of 3nh4 by Molmil
Crystal structure of murine aminoacylase 3
Descriptor: ACETATE ION, Aspartoacylase-2, CESIUM ION, ...
Authors:Hsieh, J.M, Tsirulnikov, K, Sawaya, M.R, Magilnick, N, Abuladze, N, Kurtz, I, Abramson, J, Pushkin, A.
Deposit date:2010-06-14
Release date:2010-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of aminoacylase 3 in complex with acetylated substrates.
Proc.Natl.Acad.Sci.USA, 107, 2010
3FTH
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BU of 3fth by Molmil
NFLVHSS segment from Islet Amyloid Polypeptide (IAPP or Amylin)
Descriptor: NFLVHSS heptapeptide from Islet Amyloid Polypeptide, SULFATE ION
Authors:Wiltzius, J.J.W, Sawaya, M.R, Eisenberg, D.
Deposit date:2009-01-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Molecular mechanisms for protein-encoded inheritance
Nat.Struct.Mol.Biol., 16, 2009
3FTK
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NVGSNTY segment from Islet Amyloid Polypeptide (IAPP or Amylin), hydrated crystal form
Descriptor: NVGSNTY heptapeptide segment from Islet Amyloid Polypeptide
Authors:Wiltzius, J.J.W, Sawaya, M.R, Eisenberg, D.
Deposit date:2009-01-13
Release date:2009-06-30
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanisms for protein-encoded inheritance
Nat.Struct.Mol.Biol., 16, 2009
3NVE
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BU of 3nve by Molmil
MMHFGN segment 138-143 from Syrian Hamster prion
Descriptor: Major prion protein
Authors:Apostol, M.I, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-07-08
Release date:2011-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Atomic structures suggest determinants of transmission barriers in Mammalian prion disease.
Biochemistry, 50, 2011
3NVF
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IIHFGS segment 138-143 from human prion
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Major prion protein
Authors:Apostol, M.I, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-07-08
Release date:2011-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Atomic structures suggest determinants of transmission barriers in Mammalian prion disease.
Biochemistry, 50, 2011
3NVG
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MIHFGN segment 137-142 from mouse prion
Descriptor: Major prion protein
Authors:Apostol, M.I, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-07-08
Release date:2011-03-02
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Atomic structures suggest determinants of transmission barriers in Mammalian prion disease.
Biochemistry, 50, 2011
4RPM
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BU of 4rpm by Molmil
Crystal structure of the SAT domain from the non-reducing fungal polyketide synthase CazM with bound hexanoyl
Descriptor: HEXANOIC ACID, HEXANOYL-COENZYME A, SAT domain from CazM
Authors:Winter, J.M, Cascio, D, Sawaya, M.R, Tang, Y.
Deposit date:2014-10-30
Release date:2015-09-09
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Biochemical and Structural Basis for Controlling Chemical Modularity in Fungal Polyketide Biosynthesis.
J.Am.Chem.Soc., 137, 2015
1E0K
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BU of 1e0k by Molmil
gp4d helicase from phage T7
Descriptor: DNA HELICASE
Authors:Singleton, M.R, Sawaya, M.R, Ellenberger, T, Wigley, D.B.
Deposit date:2000-03-30
Release date:2000-06-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal Structure of T7 Gene 4 Ring Helicase Indicates a Mechanism for Sequential Hydrolysis of Nucleotides
Cell(Cambridge,Mass.), 101, 2000
1Z8F
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BU of 1z8f by Molmil
Guanylate Kinase Double Mutant A58C, T157C from Mycobacterium tuberculosis (Rv1389)
Descriptor: FORMIC ACID, Guanylate kinase
Authors:Chan, S, Sawaya, M.R, Choi, B, Zocchi, G, Perry, L.J, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)
Deposit date:2005-03-30
Release date:2005-04-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of Guanylate Kinase from Mycobacterium tuberculosis (Rv1389)
To be Published
2A5X
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BU of 2a5x by Molmil
Crystal Structure of a Cross-linked Actin Dimer
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Actin, alpha skeletal muscle, ...
Authors:Kudryashov, D.S, Sawaya, M.R, Adisetiyo, H, Norcross, T, Hegyi, G, Reisler, E, Yeates, T.O.
Deposit date:2005-07-01
Release date:2005-08-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:The crystal structure of a cross-linked actin dimer suggests a detailed molecular interface in F-actin
Proc.Natl.Acad.Sci.Usa, 102, 2005
2AW9
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BU of 2aw9 by Molmil
Superoxide dismutase with manganese from Deinococcus radiodurans
Descriptor: MANGANESE (II) ION, Superoxide dismutase [Mn]
Authors:Tanaka, S, Sawaya, M.R, Chan, S, Perry, L.J.
Deposit date:2005-08-31
Release date:2006-08-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of manganese superoxide dismutase from Deinococcus radiodurans
To be Published
3DN9
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BU of 3dn9 by Molmil
Carboxysome Subunit, CcmK1 C-terminal deletion mutant
Descriptor: CcmK1 C-terminal deletion mutant, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2008-07-01
Release date:2009-01-20
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Insights from multiple structures of the shell proteins from the beta-carboxysome.
Protein Sci., 18, 2009
2RIF
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BU of 2rif by Molmil
CBS domain protein PAE2072 from Pyrobaculum aerophilum complexed with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CESIUM ION, Conserved protein with 2 CBS domains
Authors:Lee, T.M, King, N.P, Sawaya, M.R, Cascio, D, Yeates, T.O.
Deposit date:2007-10-10
Release date:2008-06-17
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structures and Functional Implications of an AMP-Binding Cystathionine beta-Synthase Domain Protein from a Hyperthermophilic Archaeon.
J.Mol.Biol., 380, 2008
3I96
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BU of 3i96 by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutS
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CHLORIDE ION, Ethanolamine utilization protein eutS, ...
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-10
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
6BCS
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BU of 6bcs by Molmil
LilrB2 D1D2 domains complexed with benzamidine
Descriptor: BENZAMIDINE, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Cao, Q, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2017-10-20
Release date:2018-09-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibiting amyloid-beta cytotoxicity through its interaction with the cell surface receptor LilrB2 by structure-based design.
Nat Chem, 10, 2018
6C3T
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BU of 6c3t by Molmil
AMYLOID FORMING PEPTIDE AADTWE FROM TRANSTHYRETIN WITH ATTR-D38A MUTATION ASSOCIATED WITH A FAMILIAL FORM OF TRANSTHYRETIN AMYLOIDOSIS
Descriptor: ALA-ALA-ASP-THR-TRP-GLU
Authors:Sievers, S.A, Sawaya, M.R, Saelices, L, Eisenberg, D.S.
Deposit date:2018-01-10
Release date:2018-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal structures of amyloidogenic segments of human transthyretin.
Protein Sci., 27, 2018
6VW2
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BU of 6vw2 by Molmil
Cryo-EM structure of human islet amyloid polypeptide (hIAPP, or amylin) fibrils
Descriptor: Islet amyloid polypeptide (SUMO-tagged)
Authors:Cao, Q, Boyer, D.R, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2020-02-18
Release date:2020-06-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure and inhibitor design of human IAPP (amylin) fibrils.
Nat.Struct.Mol.Biol., 27, 2020
3I6P
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BU of 3i6p by Molmil
Ethanolamine Utilization Microcompartment Shell Subunit, EutM
Descriptor: Ethanolamine utilization protein eutM, SULFATE ION
Authors:Tanaka, S, Sawaya, M.R, Yeates, T.O.
Deposit date:2009-07-07
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Mechanisms of a Protein-Based Organelle in Escherichia coli.
Science, 327, 2010
4RZT
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BU of 4rzt by Molmil
Lac repressor engineered to bind sucralose, sucralose-bound tetramer
Descriptor: 4-chloro-4-deoxy-alpha-D-galactopyranose-(1-2)-1,6-dichloro-1,6-dideoxy-beta-D-fructofuranose, Lac repressor
Authors:Arbing, M.A, Cascio, D, Sawaya, M.R, Kosuri, S, Church, G.M.
Deposit date:2014-12-24
Release date:2015-12-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Engineering an allosteric transcription factor to respond to new ligands.
Nat.Methods, 13, 2016
1F1C
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BU of 1f1c by Molmil
CRYSTAL STRUCTURE OF CYTOCHROME C549
Descriptor: CYTOCHROME C549, HEME C
Authors:Kerfeld, C.A, Sawaya, M.R, Yeates, T.O, Krogmann, D.W.
Deposit date:2000-05-18
Release date:2001-08-08
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of cytochrome c-549 and cytochrome c6 from the cyanobacterium Arthrospira maxima.
Biochemistry, 40, 2001
3PZZ
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BU of 3pzz by Molmil
Structure of an amyloid forming peptide GAIIGL (29-34) from amyloid beta
Descriptor: Amyloid beta A4 protein
Authors:Soriaga, A.B, Laganowsky, A.L, Sawaya, M.R, Eisenberg, D.
Deposit date:2010-12-14
Release date:2011-10-12
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Molecular basis for amyloid-beta polymorphism.
Proc.Natl.Acad.Sci.USA, 108, 2011
6E6Z
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BU of 6e6z by Molmil
Structure of Wild Type Human Transthyretin in Complex with Tafamidis
Descriptor: 2-(3,5-dichlorophenyl)-1,3-benzoxazole-6-carboxylic acid, Transthyretin
Authors:Chung, K, Saelices, L, Sawaya, M.R, Cascio, D, Eisenberg, D.
Deposit date:2018-07-25
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Variants of Transthyretin
To Be Published
6E77
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BU of 6e77 by Molmil
Structure of Human Transthyretin Asp38Ala Mutant in Complex with Tafamidis
Descriptor: 2-(3,5-dichlorophenyl)-1,3-benzoxazole-6-carboxylic acid, Transthyretin
Authors:Saelices, L, Chung, K, Sawaya, M.R, Cascio, D, Eisenberg, D.
Deposit date:2018-07-25
Release date:2019-07-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Variants of Transthyretin
To Be Published
4OLR
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BU of 4olr by Molmil
[Leu-5]-Enkephalin mutant - YVVFV
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, [Leu-5]-Enkephalin mutant - YVVFV
Authors:Sangwan, S, Eisenberg, D, Sawaya, M.R, Do, T.D, Bowers, M.T, Lapointe, N.E, Teplow, D.B, Feinstein, S.C.
Deposit date:2014-01-24
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Factors that drive Peptide assembly from native to amyloid structures: experimental and theoretical analysis of [leu-5]-enkephalin mutants.
J.Phys.Chem.B, 118, 2014

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