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PDB: 76 results

1Z9H
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Microsomal prostaglandin E synthase type-2
Descriptor: ACETATE ION, CHLORIDE ION, INDOMETHACIN, ...
Authors:Yamada, T, Komoto, J, Watanabe, K, Ohmiya, Y, Takusagawa, F.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure and Possible Catalytic Mechanism of Microsomal Prostaglandin E Synthase Type 2 (mPGES-2).
J.Mol.Biol., 348, 2005
5IMG
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C9A mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: COBALT (II) ION, Dipeptidase, GLYCEROL
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-06
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
1Y9Z
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Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, SODIUM ION, ...
Authors:Dong, D, Watanabe, K.
Deposit date:2004-12-16
Release date:2006-03-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
To be Published
1UB8
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Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue
Descriptor: 5'-D(*GP*CP*GP*AP*AP*GP*C)-3', COBALT HEXAMMINE(III)
Authors:Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2003-03-31
Release date:2004-03-09
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D, 60, 2004
1UE3
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Crystal structure of d(GCGAAAGC) containing hexaamminecobalt
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', CHLORIDE ION, COBALT HEXAMMINE(III), ...
Authors:Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2003-05-08
Release date:2004-01-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structure of d(GCGAAAGC) (hexagonal form): a base-intercalated duplex as a stable structure.
Acta Crystallogr.,Sect.D, 60, 2004
1UE4
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Crystal structure of d(GCGAAAGC)
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*C)-3', MAGNESIUM ION
Authors:Sunami, T, Kondo, J, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2003-05-09
Release date:2004-03-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of d(GCGAAGC) and d(GCGAAAGC) (tetragonal form): a switching of partners of the sheared G.A pairs to form a functional G.AxA.G crossing.
Acta Crystallogr.,Sect.D, 60, 2004
5IB9
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Crystal structure of aminopeptidase equipped with PAD from Aneurinibacillus sp. AM-1
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ZINC ION
Authors:Tagawa, R, Nakano, H, Watanabe, K.
Deposit date:2016-02-22
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of aminopeptidase
To Be Published
1TAB
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STRUCTURE OF THE TRYPSIN-BINDING DOMAIN OF BOWMAN-BIRK TYPE PROTEASE INHIBITOR AND ITS INTERACTION WITH TRYPSIN
Descriptor: BOWMAN-BIRK TYPE PROTEINASE INHIBITOR, TRYPSIN
Authors:Tsunogae, Y, Tanaka, I, Yamane, T, Kikkawa, J.-I, Ashida, T, Ishikawa, C, Watanabe, K, Nakamura, S, Takahashi, K.
Deposit date:1990-10-15
Release date:1992-01-15
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypsin-binding domain of Bowman-Birk type protease inhibitor and its interaction with trypsin.
J.Biochem.(Tokyo), 100, 1986
1V6C
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Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
Descriptor: CALCIUM ION, SULFATE ION, alkaline serine protease, ...
Authors:Dong, D, Ihara, T, Motoshima, H, Watanabe, K.
Deposit date:2003-11-28
Release date:2004-12-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Protease Apa1 from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11
To be Published
1TUW
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Structural and Functional Analysis of Tetracenomycin F2 Cyclase from Streptomyces glaucescens: A Type-II Polyketide Cyclase
Descriptor: SULFATE ION, Tetracenomycin polyketide synthesis protein tcmI
Authors:Thompson, T.B, Katayama, K, Watanabe, K, Hutchinson, C.R, Rayment, I.
Deposit date:2004-06-25
Release date:2004-08-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural and functional analysis of tetracenomycin F2 cyclase from Streptomyces glaucescens. A type II polyketide cyclase.
J.Biol.Chem., 279, 2004
2EK8
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Aminopeptidase from Aneurinibacillus sp. strain AM-1
Descriptor: Aminopeptidase, ISOPROPYL ALCOHOL, ZINC ION
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
1IXJ
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Crystal Structure of d(GCGAAAGCT) Containing Parallel-stranded Duplex with Homo Base Pairs and Anti-Parallel Duplex with Watson-Crick Base pairs
Descriptor: 5'-D(*GP*CP*GP*AP*AP*AP*GP*CP*T)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
Authors:Sunami, T, Kondo, J, Kobuna, T, Hirao, I, Watanabe, K, Miura, K, Takenaka, A.
Deposit date:2002-06-22
Release date:2002-12-11
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of d(GCGAAAGCT) Containing a Parallel-stranded Duplex with Homo Base Pairs and an Anti-Parallel Duplex with Watson-Crick Base pairs
Nucleic Acids Res., 30, 2002
1LZG
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DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZE
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DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
1LZC
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DISSECTION OF PROTEIN-CARBOHYDRATE INTERACTIONS IN MUTANT HEN EGG-WHITE LYSOZYME COMPLEXES AND THEIR HYDROLYTIC ACTIVITY
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEN EGG WHITE LYSOZYME
Authors:Maenaka, K, Matsushima, M, Song, H, Watanabe, K, Kumagai, I.
Deposit date:1995-02-10
Release date:1995-05-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dissection of protein-carbohydrate interactions in mutant hen egg-white lysozyme complexes and their hydrolytic activity.
J.Mol.Biol., 247, 1995
2EK9
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Aminopeptidase from Aneurinibacillus sp. strain AM-1 with Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ISOPROPYL ALCOHOL, ...
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
1RY0
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Structure of prostaglandin F synthase with prostaglandin D2
Descriptor: Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROSTAGLANDIN D2
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1RY8
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Prostaglandin F synthase complexed with NADPH and rutin
Descriptor: Aldo-keto reductase family 1 member C3, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, RUTIN
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
1V2X
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TrmH
Descriptor: PHOSPHATE ION, S-ADENOSYLMETHIONINE, tRNA (Gm18) methyltransferase
Authors:Nureki, O, Watanabe, K, Fukai, S, Ishii, R, Endo, Y, Hori, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-10-17
Release date:2004-05-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deep Knot Structure for Construction of Active Site and Cofactor Binding Site of tRNA Modification Enzyme
STRUCTURE, 12, 2004
1J1T
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Alginate lyase from Alteromonas sp.272
Descriptor: Alginate Lyase, CALCIUM ION, SULFATE ION
Authors:Motoshima, H, Iwatomo, Y, Watanabe, K, Oda, T, Muramatsu, T.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Alginate Lyase from Alteromonas sp.272
To be published
7F4B
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The crystal structure of the immature apo-enzyme of homoserine dehydrogenase from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Descriptor: MAGNESIUM ION, homoserine dehydrogenase
Authors:Kurihara, E, Kubota, T, Watanabe, K, Ogata, K, Kaneko, R, Oshima, T, Yoshimune, K, Goto, M.
Deposit date:2021-06-18
Release date:2022-06-22
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
7F4C
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The crystal structure of the immature holo-enzyme of homoserine dehydrogenase complexed with NADP and 1,4-butandiol from the hyperthermophilic archaeon Sulfurisphaera tokodaii.
Descriptor: 1,4-BUTANEDIOL, Homoserine dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Ogata, K, Kaneko, R, Kubota, T, Watanabe, K, Kurihara, E, Oshima, T, Yoshimune, K, Goto, M.
Deposit date:2021-06-18
Release date:2022-06-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational changes in the catalytic region are responsible for heat-induced activation of hyperthermophilic homoserine dehydrogenase.
Commun Biol, 5, 2022
7CP6
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Crystal structure of FqzB
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, IODIDE ION, MAK1-like monooxygenase, ...
Authors:Hara, K, Hashimoto, H, Matsushita, T, Kishimoto, S, Watanabe, K.
Deposit date:2020-08-06
Release date:2020-12-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Analyses of a Spiro-Carbon-Forming, Highly Promiscuous Epoxidase from Fungal Natural Product Biosynthesis.
Biochemistry, 59, 2020
7CP7
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Crystal structure of FqzB, native proteins
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, IODIDE ION, MAK1-like monooxygenase
Authors:Hara, K, Hashimoto, H, Matsushita, T, Kishimoto, S, Watanabe, K.
Deposit date:2020-08-06
Release date:2020-12-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Functional Analyses of a Spiro-Carbon-Forming, Highly Promiscuous Epoxidase from Fungal Natural Product Biosynthesis.
Biochemistry, 59, 2020
3VYV
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Crystal structure of subtilisin NAT at 1.36
Descriptor: CALCIUM ION, GLYCEROL, Subtilisin NAT
Authors:Ushijima, H, Fuchita, N, Kajiwara, T, Motoshima, H, Ueno, G, Watanabe, K.
Deposit date:2012-10-03
Release date:2013-10-09
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Crystal structure of subtilisin NAT at 1.36
TO BE PUBLISHED

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